ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6m14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CLPP1_ANASP (Q8YXH5) ATP-dependent Clp protease proteolytic subu... 33 0.67
2CLPP_AQUAE (O67357) ATP-dependent Clp protease proteolytic subun... 32 1.5
3LAX2_MEDTR (Q9FEL7) Auxin transporter-like protein 2 (AUX1-like ... 32 1.5
4ZN710_MOUSE (Q3U288) Zinc finger protein 710 31 1.9
5ZN710_HUMAN (Q8N1W2) Zinc finger protein 710 31 1.9
6CLPP2_SYNPX (Q7U6N7) ATP-dependent Clp protease proteolytic subu... 30 3.3
7CLPP_GEOSL (Q74C82) ATP-dependent Clp protease proteolytic subun... 30 5.6
8CLPP3_PROMM (Q7V7R2) ATP-dependent Clp protease proteolytic subu... 29 7.4
9CR1EA_BACTX (Q57458) Pesticidal crystal protein cry1Ea (Insectic... 29 9.6

>CLPP1_ANASP (Q8YXH5) ATP-dependent Clp protease proteolytic subunit 1 (EC|
           3.4.21.92) (Endopeptidase Clp 1)
          Length = 204

 Score = 32.7 bits (73), Expect = 0.67
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = -3

Query: 536 FMSPXXAKDYGIIDSIID 483
           FMSP  AKDYG+ID +ID
Sbjct: 173 FMSPDEAKDYGLIDQVID 190



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>CLPP_AQUAE (O67357) ATP-dependent Clp protease proteolytic subunit (EC|
           3.4.21.92) (Endopeptidase Clp)
          Length = 201

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = -3

Query: 536 FMSPXXAKDYGIIDSIIDE 480
           FMSP  AKDYG+ID +I++
Sbjct: 181 FMSPYEAKDYGLIDKVIEK 199



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>LAX2_MEDTR (Q9FEL7) Auxin transporter-like protein 2 (AUX1-like protein 2)|
           (MtLAX2)
          Length = 484

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -1

Query: 187 RSVCLAGTRRLAVVLFVCLYCNIIFPVYG*FIDTCSATTLSWAEYSXPSWXYFVLLR 17
           RS+CL    RL VV+ +  +  IIFP +G       A  +S+  Y  PS  + +  R
Sbjct: 347 RSICLRALARLPVVIPI-WFLAIIFPFFGPINSAVGALLVSFTVYIIPSAAHMLTYR 402



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>ZN710_MOUSE (Q3U288) Zinc finger protein 710|
          Length = 666

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 301 RPHQLEICLTAYSITMGLGSKMWLXXQARAYNVQFSGR 188
           RPH+ ++C  A++ T  L   M L  + + Y+  F GR
Sbjct: 351 RPHKCQVCHKAFTQTSHLKRHMLLHSEVKPYSCHFCGR 388



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>ZN710_HUMAN (Q8N1W2) Zinc finger protein 710|
          Length = 664

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 301 RPHQLEICLTAYSITMGLGSKMWLXXQARAYNVQFSGR 188
           RPH+ ++C  A++ T  L   M L  + + Y+  F GR
Sbjct: 349 RPHKCQVCHKAFTQTSHLKRHMLLHSEVKPYSCHFCGR 386



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>CLPP2_SYNPX (Q7U6N7) ATP-dependent Clp protease proteolytic subunit 2 (EC|
           3.4.21.92) (Endopeptidase Clp 2)
          Length = 197

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = -3

Query: 536 FMSPXXAKDYGIIDSIIDE 480
           FMSP  A +YG+IDS+ID+
Sbjct: 172 FMSPGEAVEYGLIDSVIDK 190



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>CLPP_GEOSL (Q74C82) ATP-dependent Clp protease proteolytic subunit (EC|
           3.4.21.92) (Endopeptidase Clp)
          Length = 199

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = -3

Query: 536 FMSPXXAKDYGIIDSIID 483
           FMS   AKDYGIID+II+
Sbjct: 173 FMSGAEAKDYGIIDNIIE 190



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>CLPP3_PROMM (Q7V7R2) ATP-dependent Clp protease proteolytic subunit 3 (EC|
           3.4.21.92) (Endopeptidase Clp 3)
          Length = 197

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 536 FMSPXXAKDYGIIDSIIDE 480
           FMSP  A  YG++DS+ID+
Sbjct: 172 FMSPAEAVGYGLVDSVIDK 190



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>CR1EA_BACTX (Q57458) Pesticidal crystal protein cry1Ea (Insecticidal|
           delta-endotoxin CryIE(a)) (Crystaline entomocidal
           protoxin) (133 kDa crystal protein)
          Length = 1171

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 75  VALQVSINQPYTGKIILQYRHTNSTTANLRV 167
           V+LQV+IN P T +  L++R+ +S  A + V
Sbjct: 502 VSLQVNINSPITQRYRLRFRYASSRDARITV 532


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,216,427
Number of Sequences: 219361
Number of extensions: 1362204
Number of successful extensions: 2979
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2979
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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