ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags6m14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_193728.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 954 Score = 196 bits (99), Expect = 5e-47 Identities = 190/222 (85%) Strand = Plus / Minus Query: 320 ctccacttacgctgccattaccatttcnaatgagcttttcctctgaaggtagatttttca 379 |||||||| | ||||||||||||||| ||| ||||| |||||||||||||||||||||| Sbjct: 919 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 860 Query: 380 ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 439 | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| |||| Sbjct: 859 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 800 Query: 440 gcacagctcccnatacaggagctaccaatccaagttttccctcgtctataatgctgtcaa 499 |||||||||| | |||||| ||||| || | || || || ||||||| |||||||| Sbjct: 799 gcacagctcctgccaaaggagcaaccaaccccggcttcccttcatctataacgctgtcaa 740 Query: 500 ttattccataatccttggcctncnaaggactcatgaaanagt 541 ||| |||||||||||||| | | |||||||||||||| ||| Sbjct: 739 ctatgccataatccttggcttcccaaggactcatgaaatagt 698
>gb|AF514859.1| Oryza sativa (indica cultivar-group) ATP-dependent Clp protease (Pi-HIT-1) gene, complete cds Length = 2750 Score = 196 bits (99), Expect = 5e-47 Identities = 190/222 (85%) Strand = Plus / Minus Query: 320 ctccacttacgctgccattaccatttcnaatgagcttttcctctgaaggtagatttttca 379 |||||||| | ||||||||||||||| ||| ||||| |||||||||||||||||||||| Sbjct: 2182 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 2123 Query: 380 ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 439 | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| |||| Sbjct: 2122 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 2063 Query: 440 gcacagctcccnatacaggagctaccaatccaagttttccctcgtctataatgctgtcaa 499 |||||||||| | |||||| ||||| || | || || || ||||||| |||||||| Sbjct: 2062 gcacagctcctgccaaaggagcaaccaaccccggcttcccttcatctataacgctgtcaa 2003 Query: 500 ttattccataatccttggcctncnaaggactcatgaaanagt 541 ||| |||||||||||||| | | |||||||||||||| ||| Sbjct: 2002 ctatgccataatccttggcttcccaaggactcatgaaatagt 1961
>gb|AF450251.1|AF450251 Oryza sativa blast-resistant mRNA, partial sequence Length = 613 Score = 196 bits (99), Expect = 5e-47 Identities = 190/222 (85%) Strand = Plus / Minus Query: 320 ctccacttacgctgccattaccatttcnaatgagcttttcctctgaaggtagatttttca 379 |||||||| | ||||||||||||||| ||| ||||| |||||||||||||||||||||| Sbjct: 369 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 310 Query: 380 ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 439 | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| |||| Sbjct: 309 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 250 Query: 440 gcacagctcccnatacaggagctaccaatccaagttttccctcgtctataatgctgtcaa 499 |||||||||| | |||||| ||||| || | || || || ||||||| |||||||| Sbjct: 249 gcacagctcctgccaaaggagcaaccaaccccggcttcccttcatctataacgctgtcaa 190 Query: 500 ttattccataatccttggcctncnaaggactcatgaaanagt 541 ||| |||||||||||||| | | |||||||||||||| ||| Sbjct: 189 ctatgccataatccttggcttcccaaggactcatgaaatagt 148
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 196 bits (99), Expect = 5e-47 Identities = 190/222 (85%) Strand = Plus / Minus Query: 320 ctccacttacgctgccattaccatttcnaatgagcttttcctctgaaggtagatttttca 379 |||||||| | ||||||||||||||| ||| ||||| |||||||||||||||||||||| Sbjct: 17747747 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 17747688 Query: 380 ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 439 | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| |||| Sbjct: 17747687 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 17747628 Query: 440 gcacagctcccnatacaggagctaccaatccaagttttccctcgtctataatgctgtcaa 499 |||||||||| | |||||| ||||| || | || || || ||||||| |||||||| Sbjct: 17747627 gcacagctcctgccaaaggagcaaccaaccccggcttcccttcatctataacgctgtcaa 17747568 Query: 500 ttattccataatccttggcctncnaaggactcatgaaanagt 541 ||| |||||||||||||| | | |||||||||||||| ||| Sbjct: 17747567 ctatgccataatccttggcttcccaaggactcatgaaatagt 17747526
>dbj|AP003217.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0094H06 Length = 147245 Score = 196 bits (99), Expect = 5e-47 Identities = 190/222 (85%) Strand = Plus / Minus Query: 320 ctccacttacgctgccattaccatttcnaatgagcttttcctctgaaggtagatttttca 379 |||||||| | ||||||||||||||| ||| ||||| |||||||||||||||||||||| Sbjct: 129282 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 129223 Query: 380 ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 439 | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| |||| Sbjct: 129222 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 129163 Query: 440 gcacagctcccnatacaggagctaccaatccaagttttccctcgtctataatgctgtcaa 499 |||||||||| | |||||| ||||| || | || || || ||||||| |||||||| Sbjct: 129162 gcacagctcctgccaaaggagcaaccaaccccggcttcccttcatctataacgctgtcaa 129103 Query: 500 ttattccataatccttggcctncnaaggactcatgaaanagt 541 ||| |||||||||||||| | | |||||||||||||| ||| Sbjct: 129102 ctatgccataatccttggcttcccaaggactcatgaaatagt 129061
>dbj|AK102473.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094H09, full insert sequence Length = 1257 Score = 196 bits (99), Expect = 5e-47 Identities = 190/222 (85%) Strand = Plus / Minus Query: 320 ctccacttacgctgccattaccatttcnaatgagcttttcctctgaaggtagatttttca 379 |||||||| | ||||||||||||||| ||| ||||| |||||||||||||||||||||| Sbjct: 987 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 928 Query: 380 ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 439 | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| |||| Sbjct: 927 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 868 Query: 440 gcacagctcccnatacaggagctaccaatccaagttttccctcgtctataatgctgtcaa 499 |||||||||| | |||||| ||||| || | || || || ||||||| |||||||| Sbjct: 867 gcacagctcctgccaaaggagcaaccaaccccggcttcccttcatctataacgctgtcaa 808 Query: 500 ttattccataatccttggcctncnaaggactcatgaaanagt 541 ||| |||||||||||||| | | |||||||||||||| ||| Sbjct: 807 ctatgccataatccttggcttcccaaggactcatgaaatagt 766
>gb|AY109053.1| Zea mays PCO106983 mRNA sequence Length = 704 Score = 95.6 bits (48), Expect = 1e-16 Identities = 191/240 (79%) Strand = Plus / Plus Query: 298 gcctccttcagcattccatcagctccacttacgctgccattaccatttcnaatgagcttt 357 |||||||| ||| |||||||| ||||| || | || || |||||||| ||| || || Sbjct: 176 gcctccttgagctttccatcatctccagttgcacttccgttaccattgtgaattagtttc 235 Query: 358 tcctctgaaggtagatttttcattatttttctagttggtcctgaagcgttccacaagtac 417 |||||||||||||||| |||||| || || || || || || ||||| |||||||||||| Sbjct: 236 tcctctgaaggtagatgtttcatgatcttcctggtcggccccgaagccttccacaagtac 295 Query: 418 cacatacgtgattttgggggtggcacagctcccnatacaggagctaccaatccaagtttt 477 |||| ||| ||||| || || || |||| ||| | ||||||||||| || |||| Sbjct: 296 cacacacgcgatttgggaggcggaacagatcctgccaagggagctaccaaccctggtttc 355 Query: 478 ccctcgtctataatgctgtcaattattccataatccttggcctncnaaggactcatgaaa 537 ||||| ||||| || |||||| ||| |||||||||||||| | | |||||||||||||| Sbjct: 356 ccctcatctatgatattgtcaactatcccataatccttggcttccgaaggactcatgaaa 415
>gb|AC073261.8| Homo sapiens BAC clone RP11-252P18 from 7, complete sequence Length = 93403 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 120 atattacaatacaggcatacaa 141 |||||||||||||||||||||| Sbjct: 85035 atattacaatacaggcatacaa 85014
>emb|AL445532.8| Human DNA sequence from clone RP11-263K15 on chromosome 9 Contains the 3' end of the NTRK2 gene for Neurotrophic tyrosine kinase, receptor, type 2 (TRKB), complete sequence Length = 171629 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 375 tttcattatttttctagttggt 396 |||||||||||||||||||||| Sbjct: 49835 tttcattatttttctagttggt 49856
>gb|AC183380.3| Pan troglodytes BAC clone CH251-605G19 from chromosome 7, complete sequence Length = 223844 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 120 atattacaatacaggcatacaa 141 |||||||||||||||||||||| Sbjct: 173151 atattacaatacaggcatacaa 173130
>gb|AC182700.2| Populus trichocarpa clone Pop1-73H20, complete sequence Length = 90044 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 gaaaaataatattacaataca 132 ||||||||||||||||||||| Sbjct: 19341 gaaaaataatattacaataca 19321
>emb|AL596327.5| Human DNA sequence from clone RP11-110F24 on chromosome 1, complete sequence Length = 94737 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 373 tttttcattatttttctagtt 393 ||||||||||||||||||||| Sbjct: 33427 tttttcattatttttctagtt 33447
>gb|AC025428.10| Homo sapiens chromosome 10 clone RP11-475D12, complete sequence Length = 174906 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 105 tatacaggaaaaataatatta 125 ||||||||||||||||||||| Sbjct: 81071 tatacaggaaaaataatatta 81051
>gb|AC166645.4| Mus musculus chromosome 1, clone RP24-355D12, complete sequence Length = 169550 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 tattacaatacaggcataca 140 |||||||||||||||||||| Sbjct: 78853 tattacaatacaggcataca 78872
>gb|AC167362.2| Mus musculus BAC clone RP23-74P17 from chromosome 7, complete sequence Length = 215537 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 aggaaaaataatattacaat 129 |||||||||||||||||||| Sbjct: 176658 aggaaaaataatattacaat 176639
>gb|AC103396.8| Mus musculus chromosome 1, clone RP24-142I5, complete sequence Length = 183930 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 tattacaatacaggcataca 140 |||||||||||||||||||| Sbjct: 139580 tattacaatacaggcataca 139599
>gb|BC061232.1| Mus musculus oxoglutarate dehydrogenase (lipoamide), mRNA (cDNA clone IMAGE:6535602), complete cds Length = 1980 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 395 gtcctgaagcgttccacaagtacc 418 |||||||||| ||||||||||||| Sbjct: 76 gtcctgaagccttccacaagtacc 53
>emb|CR790378.10| Zebrafish DNA sequence from clone DKEY-112E17 in linkage group 5, complete sequence Length = 160791 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 tgcactgcaagtatcaataaatca 100 |||||| ||||||||||||||||| Sbjct: 29309 tgcactacaagtatcaataaatca 29332
>gb|AC122046.2| Mus musculus BAC clone RP24-449N4 from 7, complete sequence Length = 150101 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 aggaaaaataatattacaat 129 |||||||||||||||||||| Sbjct: 70766 aggaaaaataatattacaat 70785
>ref|XM_651128.1| Entamoeba histolytica HM-1:IMSS ubiquitin carboxyl-terminal hydrolase (16.t00053) partial mRNA Length = 5580 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 gtagatttttcattattttt 387 |||||||||||||||||||| Sbjct: 1354 gtagatttttcattattttt 1335
>gb|BC013670.1| Mus musculus oxoglutarate dehydrogenase (lipoamide), mRNA (cDNA clone MGC:19042 IMAGE:4188988), complete cds Length = 4035 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 395 gtcctgaagcgttccacaagtacc 418 |||||||||| ||||||||||||| Sbjct: 54 gtcctgaagccttccacaagtacc 31
>gb|AF045646.3| Caenorhabditis elegans cosmid F56B3, complete sequence Length = 39874 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 agatttttcattatttttct 389 |||||||||||||||||||| Sbjct: 36239 agatttttcattatttttct 36258
>emb|AL359762.24| Human DNA sequence from clone RP11-118B23 on chromosome 1 Contains the 3' end of the gene for RNA processing factor 1 (RPF1), the GNG5 gene for guanine nucleotide binding protein (G protein), gamma 5, the SPATA1 gene for spermatogenesis associated 1, the CTBS gene for chitobiase, di-N-acetyl- and a CpG island, complete sequence Length = 125565 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 atttttcattatttttctag 391 |||||||||||||||||||| Sbjct: 6107 atttttcattatttttctag 6126
>emb|AL607152.21| Mouse DNA sequence from clone RP23-198N14 on chromosome 11, complete sequence Length = 232408 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 395 gtcctgaagcgttccacaagtacc 418 |||||||||| ||||||||||||| Sbjct: 104189 gtcctgaagccttccacaagtacc 104166
>emb|AL035076.1|SPCC417 S.pombe chromosome III cosmid c417 Length = 40383 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 acatatctcaagttgatgag 297 |||||||||||||||||||| Sbjct: 15747 acatatctcaagttgatgag 15728
>gb|AC021956.8| Homo sapiens chromosome 11, clone RP11-447I3, complete sequence Length = 197864 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 tttcattatttttctagttg 394 |||||||||||||||||||| Sbjct: 178905 tttcattatttttctagttg 178924
>emb|BX571721.8| Zebrafish DNA sequence from clone DKEY-250L23 in linkage group 8, complete sequence Length = 168402 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 aatgagcttttcctctgaag 367 |||||||||||||||||||| Sbjct: 132434 aatgagcttttcctctgaag 132415
>gb|AC162615.2| Mus musculus chromosome 7, clone RP23-94C20, complete sequence Length = 130735 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 364 gaaggtagatttttcattattttt 387 ||||||||||||| |||||||||| Sbjct: 41590 gaaggtagattttgcattattttt 41567
>dbj|AK220536.1| Mus musculus mRNA for mKIAA4192 protein Length = 4089 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 395 gtcctgaagcgttccacaagtacc 418 |||||||||| ||||||||||||| Sbjct: 82 gtcctgaagccttccacaagtacc 59
>gb|AC091925.3| Homo sapiens chromosome 5 clone RP11-278J6, complete sequence Length = 164668 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 atcctaaccccatggtgatg 263 |||||||||||||||||||| Sbjct: 140259 atcctaaccccatggtgatg 140278
>gb|AC104442.2| Homo sapiens chromosome 3 clone RP11-905F6, complete sequence Length = 219227 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 tttcctctgaaggtagattt 375 |||||||||||||||||||| Sbjct: 4734 tttcctctgaaggtagattt 4715
>gb|AC021006.7| Homo sapiens chromosome 11, clone RP11-124G5, complete sequence Length = 183772 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 tttcattatttttctagttg 394 |||||||||||||||||||| Sbjct: 87166 tttcattatttttctagttg 87185
>ref|NM_010956.2| Mus musculus oxoglutarate dehydrogenase (lipoamide) (Ogdh), mRNA Length = 6638 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 395 gtcctgaagcgttccacaagtacc 418 |||||||||| ||||||||||||| Sbjct: 121 gtcctgaagccttccacaagtacc 98
>dbj|AK147289.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1007N08 product:oxoglutarate dehydrogenase (lipoamide), full insert sequence Length = 6638 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 395 gtcctgaagcgttccacaagtacc 418 |||||||||| ||||||||||||| Sbjct: 121 gtcctgaagccttccacaagtacc 98
>dbj|AK150009.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530117I02 product:oxoglutarate dehydrogenase (lipoamide), full insert sequence Length = 4127 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 395 gtcctgaagcgttccacaagtacc 418 |||||||||| ||||||||||||| Sbjct: 86 gtcctgaagccttccacaagtacc 63
>gb|AC013603.17| Homo sapiens, clone RP11-10D7, complete sequence Length = 177839 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 ggaaaaataatattacaata 130 |||||||||||||||||||| Sbjct: 16833 ggaaaaataatattacaata 16852
>dbj|AK169286.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:I920176A16 product:oxoglutarate dehydrogenase (lipoamide), full insert sequence Length = 4155 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 395 gtcctgaagcgttccacaagtacc 418 |||||||||| ||||||||||||| Sbjct: 112 gtcctgaagccttccacaagtacc 89
>dbj|AK088582.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430020N12 product:oxoglutarate dehydrogenase (lipoamide) (EC 1.2.4.2) E1 component (fragment) homolog [Mus musculus], full insert sequence Length = 3554 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 395 gtcctgaagcgttccacaagtacc 418 |||||||||| ||||||||||||| Sbjct: 48 gtcctgaagccttccacaagtacc 25
>dbj|AK008811.1| Mus musculus adult male stomach cDNA, RIKEN full-length enriched library, clone:2210403E04 product:unclassifiable, full insert sequence Length = 779 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 395 gtcctgaagcgttccacaagtacc 418 |||||||||| ||||||||||||| Sbjct: 76 gtcctgaagccttccacaagtacc 53
>dbj|AP000030.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 1/28, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 atcctaaccccatggtgatg 263 |||||||||||||||||||| Sbjct: 84357 atcctaaccccatggtgatg 84376
>gb|AC138058.2| Homo sapiens chromosome 3 clone RP11-298C2, complete sequence Length = 154123 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 tttcctctgaaggtagattt 375 |||||||||||||||||||| Sbjct: 79348 tttcctctgaaggtagattt 79329
>gb|AC155998.2| Xenopus tropicalis clone ISB1-313L20, complete sequence Length = 86223 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 tttttcattatttttctagt 392 |||||||||||||||||||| Sbjct: 79753 tttttcattatttttctagt 79734
>dbj|AK201619.1| Mus musculus cDNA, clone:Y1G0138N03, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000064907, based on BLAT search Length = 172 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 395 gtcctgaagcgttccacaagtacc 418 |||||||||| ||||||||||||| Sbjct: 70 gtcctgaagccttccacaagtacc 47
>emb|BX005018.8| Zebrafish DNA sequence from clone DKEY-209K18, complete sequence Length = 183614 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 aatgagcttttcctctgaag 367 |||||||||||||||||||| Sbjct: 111780 aatgagcttttcctctgaag 111761
>emb|CR456625.13| Zebrafish DNA sequence from clone DKEY-76G24 in linkage group 12, complete sequence Length = 228447 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 tataatgctgtcaattattc 505 |||||||||||||||||||| Sbjct: 121266 tataatgctgtcaattattc 121285
>emb|AL163051.5|CNS01RIA Human chromosome 14 DNA sequence BAC R-872J21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 188020 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 370 agatttttcattatttttctagtt 393 ||||||| |||||||||||||||| Sbjct: 96509 agattttacattatttttctagtt 96532
>dbj|AP001711.1| Homo sapiens genomic DNA, chromosome 21q, section 55/105 Length = 340000 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 atcctaaccccatggtgatg 263 |||||||||||||||||||| Sbjct: 231363 atcctaaccccatggtgatg 231382
>gb|AC004066.1|AC004066 Homo sapiens chromosome 4 clone B353C18 map 4q25, complete sequence Length = 139877 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 atacaggaaaaataatattacaat 129 |||||| ||||||||||||||||| Sbjct: 135824 atacagtaaaaataatattacaat 135847
>emb|Z11126.1|CEZK643 Caenorhabditis elegans Cosmid ZK643, complete sequence Length = 39534 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 tttttcattatttttctagt 392 |||||||||||||||||||| Sbjct: 15270 tttttcattatttttctagt 15289
>emb|AL672074.19| Mouse DNA sequence from clone RP23-404I18 on chromosome X, complete sequence Length = 171593 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 tttcattatttttctagttg 394 |||||||||||||||||||| Sbjct: 127922 tttcattatttttctagttg 127903
>emb|AL626772.10| Mouse DNA sequence from clone RP23-90D4 on chromosome 4, complete sequence Length = 230614 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 atacaggaaaaataatatta 125 |||||||||||||||||||| Sbjct: 77737 atacaggaaaaataatatta 77718
>gb|AC091144.12| Homo sapiens chromosome 8, clone RP11-359B20, complete sequence Length = 185872 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 ggaaaaataatattacaata 130 |||||||||||||||||||| Sbjct: 6533 ggaaaaataatattacaata 6514
>dbj|AP000252.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone:T650, complete sequence Length = 67008 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 atcctaaccccatggtgatg 263 |||||||||||||||||||| Sbjct: 7200 atcctaaccccatggtgatg 7219
>dbj|AP000212.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone f43D11-119B8, segment 10/12, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 atcctaaccccatggtgatg 263 |||||||||||||||||||| Sbjct: 44351 atcctaaccccatggtgatg 44370 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,476,311 Number of Sequences: 3902068 Number of extensions: 4476311 Number of successful extensions: 99817 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99699 Number of HSP's gapped (non-prelim): 118 length of query: 541 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 518 effective length of database: 17,143,297,704 effective search space: 8880228210672 effective search space used: 8880228210672 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
