ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags7b10 |
|---|---|
| Clone Library Name | barley_pub |
>Y3846_ARATH (Q8LB17) Protein At3g58460| Length = 403 Score = 58.2 bits (139), Expect = 2e-08 Identities = 28/39 (71%), Positives = 34/39 (87%) Frame = -2 Query: 575 DEELKKLVGMGFERTQAEVALAAADGDPNVAIEILMSQQ 459 +E+++KLV MGF+RTQ EVALAAAD D VA+EILMSQQ Sbjct: 364 EEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQQ 402
>ATU1_YEAST (P38360) Probable copper-transporting ATPase (EC 3.6.3.4)| (Cu(2+)-ATPase) Length = 1216 Score = 31.6 bits (70), Expect = 2.2 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 5/91 (5%) Frame = +3 Query: 405 CCSIAALTLI*NCG*SLILLAHENLNGNIGISVRGSKSNFSLSPFKAHSNQLLKLFIKCI 584 CC+I+ + I + G+ + + GS S SLS K S Q +++ + Sbjct: 237 CCNISCVERIASRS-----CEKRTFKGSTNVGISGSSSTDSLSE-KFFSEQYSRMYNRYS 290 Query: 585 SLVSCYCCISS-----DSVCCCMPSMQICTG 662 S++ CI + CC+P ++ C+G Sbjct: 291 SILKNLGCICNYLRTLGKESCCLPKVRFCSG 321
>RAD23_YEAST (P32628) UV excision repair protein RAD23| Length = 398 Score = 31.6 bits (70), Expect = 2.2 Identities = 13/36 (36%), Positives = 26/36 (72%) Frame = -2 Query: 575 DEELKKLVGMGFERTQAEVALAAADGDPNVAIEILM 468 +E +++++ MG++R + E AL AA +P+ A+E L+ Sbjct: 149 NETIERIMEMGYQREEVERALRAAFNNPDRAVEYLL 184
>ENP1_BOVIN (O18956) Ectonucleoside triphosphate diphosphohydrolase 1 (EC| 3.6.1.5) (NTPDase1) (Ecto-ATP diphosphohydrolase) (ATPDase) (Lymphoid cell activation antigen) (CD39 antigen) (Ecto-apyrase) Length = 513 Score = 31.2 bits (69), Expect = 2.9 Identities = 11/27 (40%), Positives = 20/27 (74%), Gaps = 4/27 (14%) Frame = +1 Query: 250 KCKQALV----SSFCTYTSCTINGTFL 318 +C+Q+++ +S+C Y+SC+ NG FL Sbjct: 326 RCRQSIIQLFNTSYCPYSSCSFNGVFL 352
>RHP23_SCHPO (O74803) UV excision repair protein rhp23 (RAD23 homolog)| Length = 368 Score = 31.2 bits (69), Expect = 2.9 Identities = 13/34 (38%), Positives = 25/34 (73%) Frame = -2 Query: 566 LKKLVGMGFERTQAEVALAAADGDPNVAIEILMS 465 ++ +V MG+ER++ E A+ AA +P+ A+E L++ Sbjct: 151 VENMVEMGYERSEVERAMRAAFNNPDRAVEYLLT 184
>MUD1_SCHPO (Q10256) UBA-domain protein mud1 (UBA-domain-containing protein 1)| (DNA-damage-inducible protein DDI1 homolog) Length = 332 Score = 31.2 bits (69), Expect = 2.9 Identities = 15/36 (41%), Positives = 24/36 (66%) Frame = -2 Query: 575 DEELKKLVGMGFERTQAEVALAAADGDPNVAIEILM 468 + ++ +LV MGF+ +A AL AA+GD +VA L+ Sbjct: 297 NSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 332
>YD27_SCHPO (Q10255) Hypothetical protein C56F8.07 in chromosome I| Length = 507 Score = 31.2 bits (69), Expect = 2.9 Identities = 15/36 (41%), Positives = 24/36 (66%) Frame = -2 Query: 575 DEELKKLVGMGFERTQAEVALAAADGDPNVAIEILM 468 + ++ +LV MGF+ +A AL AA+GD +VA L+ Sbjct: 472 NSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 507
>UBC1_MOUSE (P61087) Ubiquitin-conjugating enzyme E2-25 kDa (EC 6.3.2.19)| (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (E2(25K)) (Huntingtin-interacting protein 2) (HIP-2) Length = 199 Score = 29.6 bits (65), Expect = 8.4 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = -2 Query: 578 FDEELKKLVGMGFERTQAEVALAAADGDPNVAIEILMS 465 + ++++ L MGF+R VAL++ D A E+L+S Sbjct: 161 YTKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLS 198
>UBC1_HUMAN (P61086) Ubiquitin-conjugating enzyme E2-25 kDa (EC 6.3.2.19)| (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (E2(25K)) (Huntingtin-interacting protein 2) (HIP-2) Length = 199 Score = 29.6 bits (65), Expect = 8.4 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = -2 Query: 578 FDEELKKLVGMGFERTQAEVALAAADGDPNVAIEILMS 465 + ++++ L MGF+R VAL++ D A E+L+S Sbjct: 161 YTKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLS 198
>UBC1_BOVIN (P61085) Ubiquitin-conjugating enzyme E2-25 kDa (EC 6.3.2.19)| (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (E2(25K)) (Huntingtin-interacting protein 2) (HIP-2) Length = 199 Score = 29.6 bits (65), Expect = 8.4 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = -2 Query: 578 FDEELKKLVGMGFERTQAEVALAAADGDPNVAIEILMS 465 + ++++ L MGF+R VAL++ D A E+L+S Sbjct: 161 YTKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLS 198
>DNJC5_RAT (P60905) DnaJ homolog subfamily C member 5 (Cysteine string| protein) (CSP) Length = 198 Score = 29.6 bits (65), Expect = 8.4 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Frame = +3 Query: 483 GNIGISVRGSKSNFSLSPFKAHSNQLLK-LFIKCISLVSCYCCISSDSVCCC 635 G++G+ V +++ + S+ K LF+ C L CYCC +CCC Sbjct: 80 GSLGLYVAEQFGEENVNTYFVLSSWWAKALFVVCGLLTCCYCCC---CLCCC 128
>DNJC5_MOUSE (P60904) DnaJ homolog subfamily C member 5 (Cysteine string| protein) (CSP) Length = 198 Score = 29.6 bits (65), Expect = 8.4 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Frame = +3 Query: 483 GNIGISVRGSKSNFSLSPFKAHSNQLLK-LFIKCISLVSCYCCISSDSVCCC 635 G++G+ V +++ + S+ K LF+ C L CYCC +CCC Sbjct: 80 GSLGLYVAEQFGEENVNTYFVLSSWWAKALFVVCGLLTCCYCCC---CLCCC 128
>DNJC5_BOVIN (Q29455) DnaJ homolog subfamily C member 5 (Cysteine string| protein) (CSP) Length = 198 Score = 29.6 bits (65), Expect = 8.4 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Frame = +3 Query: 483 GNIGISVRGSKSNFSLSPFKAHSNQLLK-LFIKCISLVSCYCCISSDSVCCC 635 G++G+ V +++ + S+ K LFI C L CYCC +CCC Sbjct: 80 GSLGLYVAEQFGEENVNTYFVLSSWWAKALFIFCGLLTCCYCCC---CLCCC 128 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,915,004 Number of Sequences: 219361 Number of extensions: 1583598 Number of successful extensions: 3555 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3451 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3553 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6370891296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
