| Clone Name | rbags7b09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_183787.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1554 Score = 450 bits (227), Expect = e-123 Identities = 327/361 (90%) Strand = Plus / Minus Query: 207 tcaaggcttccatatcttcatcatacaatcttgggcataggtggcaaccaagttcctgtg 266 ||||||||||||| | |||||| | ||||||| ||||| || |||| ||||||||| || Sbjct: 1554 tcaaggcttccatgttttcatcgtgcaatcttcagcataagtagcaatcaagttcctatg 1495 Query: 267 agggtggtgagtaatgccaatcacatncttgtcatggaccttcattagatgctcaagttt 326 |||||||||||| ||||| ||||||| |||||| |||||||||||||||||||| ||||| Sbjct: 1494 agggtggtgagtgatgcctatcacatccttgtcgtggaccttcattagatgctccagttt 1435 Query: 327 accggactgttggctaaagcaatacatgttcatatcttcaccaacacagtatatccattc 386 ||||||||| | ||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 1434 accggactggtagctaaagcaatacatgttcatgtcttcaccaacacaatatatccattc 1375 Query: 387 tccttttggtgaaactgaagctgcaacaaaatctnctccttcccgtttaccagatgagaa 446 ||||||||||||||| |||||||||| |||||| | |||||||||||||||||||| || Sbjct: 1374 tccttttggtgaaacggaagctgcaaggaaatctcccccttcccgtttaccagatgaaaa 1315 Query: 447 actttttacaacctgtccttgtaaagtcatgatgtatattgacgaagtcttattgcagac 506 ||||||||||||||||||||||| |||||| ||||||||||| || ||||||||||| || Sbjct: 1314 actttttacaacctgtccttgtagagtcattatgtatattgaagatgtcttattgcacac 1255 Query: 507 aacaatgtgatcactattctttggaaacaaatggacagagttaacagatgcatctcctcc 566 || |||||||||||||||||||||| | ||||||||||||||||||| |||||||||||| Sbjct: 1254 aataatgtgatcactattctttggagataaatggacagagttaacagttgcatctcctcc 1195 Query: 567 c 567 | Sbjct: 1194 c 1194
>dbj|AK121409.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132M16, full insert sequence Length = 1970 Score = 450 bits (227), Expect = e-123 Identities = 327/361 (90%) Strand = Plus / Minus Query: 207 tcaaggcttccatatcttcatcatacaatcttgggcataggtggcaaccaagttcctgtg 266 ||||||||||||| | |||||| | ||||||| ||||| || |||| ||||||||| || Sbjct: 1643 tcaaggcttccatgttttcatcgtgcaatcttcagcataagtagcaatcaagttcctatg 1584 Query: 267 agggtggtgagtaatgccaatcacatncttgtcatggaccttcattagatgctcaagttt 326 |||||||||||| ||||| ||||||| |||||| |||||||||||||||||||| ||||| Sbjct: 1583 agggtggtgagtgatgcctatcacatccttgtcgtggaccttcattagatgctccagttt 1524 Query: 327 accggactgttggctaaagcaatacatgttcatatcttcaccaacacagtatatccattc 386 ||||||||| | ||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 1523 accggactggtagctaaagcaatacatgttcatgtcttcaccaacacaatatatccattc 1464 Query: 387 tccttttggtgaaactgaagctgcaacaaaatctnctccttcccgtttaccagatgagaa 446 ||||||||||||||| |||||||||| |||||| | |||||||||||||||||||| || Sbjct: 1463 tccttttggtgaaacggaagctgcaaggaaatctcccccttcccgtttaccagatgaaaa 1404 Query: 447 actttttacaacctgtccttgtaaagtcatgatgtatattgacgaagtcttattgcagac 506 ||||||||||||||||||||||| |||||| ||||||||||| || ||||||||||| || Sbjct: 1403 actttttacaacctgtccttgtagagtcattatgtatattgaagatgtcttattgcacac 1344 Query: 507 aacaatgtgatcactattctttggaaacaaatggacagagttaacagatgcatctcctcc 566 || |||||||||||||||||||||| | ||||||||||||||||||| |||||||||||| Sbjct: 1343 aataatgtgatcactattctttggagataaatggacagagttaacagttgcatctcctcc 1284 Query: 567 c 567 | Sbjct: 1283 c 1283
>gb|AY107245.1| Zea mays PCO091329 mRNA sequence Length = 525 Score = 385 bits (194), Expect = e-103 Identities = 288/320 (90%) Strand = Plus / Minus Query: 205 agtcaaggcttccatatcttcatcatacaatcttgggcataggtggcaaccaagttcctg 264 |||||||||||||||||||||||||||||||| | ||| |||||| || ||||||||| Sbjct: 333 agtcaaggcttccatatcttcatcatacaatcctcagcaatggtggctactaagttcctg 274 Query: 265 tgagggtggtgagtaatgccaatcacatncttgtcatggaccttcattagatgctcaagt 324 ||||| ||||| |||||||| || |||| ||| ||||| |||||||| |||||||| ||| Sbjct: 273 tgaggatggtgcgtaatgcctatgacatccttctcatgcaccttcatcagatgctccagt 214 Query: 325 ttaccggactgttggctaaagcaatacatgttcatatcttcaccaacacagtatatccat 384 ||||| || || | ||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct: 213 ttaccagattggtagctaaagcaatacatgttcatgtcttcaccaacacaatatatccat 154 Query: 385 tctccttttggtgaaactgaagctgcaacaaaatctnctccttcccgtttaccagatgag 444 |||||||||||||||||||||||||||||||||||| | ||||| || ||||| |||||| Sbjct: 153 tctccttttggtgaaactgaagctgcaacaaaatctcccccttctcgcttacctgatgag 94 Query: 445 aaactttttacaacctgtccttgtaaagtcatgatgtatattgacgaagtcttattgcag 504 ||||| || ||||||||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct: 93 aaactcttcacaacctgtccttgtaaagtcatgatgaatattgatgaagtcttattgcag 34 Query: 505 acaacaatgtgatcactatt 524 ||||||||||||||| |||| Sbjct: 33 acaacaatgtgatcagtatt 14
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 149 bits (75), Expect = 1e-32 Identities = 102/111 (91%) Strand = Plus / Plus Query: 457 acctgtccttgtaaagtcatgatgtatattgacgaagtcttattgcagacaacaatgtga 516 ||||||||||||| |||||| ||||||||||| || ||||||||||| |||| ||||||| Sbjct: 12287496 acctgtccttgtagagtcattatgtatattgaagatgtcttattgcacacaataatgtga 12287555 Query: 517 tcactattctttggaaacaaatggacagagttaacagatgcatctcctccc 567 ||||||||||||||| | ||||||||||||||||||| ||||||||||||| Sbjct: 12287556 tcactattctttggagataaatggacagagttaacagttgcatctcctccc 12287606 Score = 149 bits (75), Expect = 1e-32 Identities = 95/102 (93%) Strand = Plus / Plus Query: 361 tcttcaccaacacagtatatccattctccttttggtgaaactgaagctgcaacaaaatct 420 |||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||| Sbjct: 12286774 tcttcaccaacacaatatatccattctccttttggtgaaacggaagctgcaaggaaatct 12286833 Query: 421 nctccttcccgtttaccagatgagaaactttttacaacctgt 462 | |||||||||||||||||||| |||||||||||||||||| Sbjct: 12286834 cccccttcccgtttaccagatgaaaaactttttacaacctgt 12286875 Score = 91.7 bits (46), Expect = 2e-15 Identities = 87/101 (86%) Strand = Plus / Plus Query: 207 tcaaggcttccatatcttcatcatacaatcttgggcataggtggcaaccaagttcctgtg 266 ||||||||||||| | |||||| | ||||||| ||||| || |||| ||||||||| || Sbjct: 12286416 tcaaggcttccatgttttcatcgtgcaatcttcagcataagtagcaatcaagttcctatg 12286475 Query: 267 agggtggtgagtaatgccaatcacatncttgtcatggacct 307 |||||||||||| ||||| ||||||| |||||| ||||||| Sbjct: 12286476 agggtggtgagtgatgcctatcacatccttgtcgtggacct 12286516 Score = 83.8 bits (42), Expect = 6e-13 Identities = 51/54 (94%) Strand = Plus / Plus Query: 304 accttcattagatgctcaagtttaccggactgttggctaaagcaatacatgttc 357 ||||||||||||||||| |||||||||||||| | ||||||||||||||||||| Sbjct: 12286630 accttcattagatgctccagtttaccggactggtagctaaagcaatacatgttc 12286683
>dbj|AP002953.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0426D06 Length = 162173 Score = 149 bits (75), Expect = 1e-32 Identities = 102/111 (91%) Strand = Plus / Plus Query: 457 acctgtccttgtaaagtcatgatgtatattgacgaagtcttattgcagacaacaatgtga 516 ||||||||||||| |||||| ||||||||||| || ||||||||||| |||| ||||||| Sbjct: 112122 acctgtccttgtagagtcattatgtatattgaagatgtcttattgcacacaataatgtga 112181 Query: 517 tcactattctttggaaacaaatggacagagttaacagatgcatctcctccc 567 ||||||||||||||| | ||||||||||||||||||| ||||||||||||| Sbjct: 112182 tcactattctttggagataaatggacagagttaacagttgcatctcctccc 112232 Score = 149 bits (75), Expect = 1e-32 Identities = 95/102 (93%) Strand = Plus / Plus Query: 361 tcttcaccaacacagtatatccattctccttttggtgaaactgaagctgcaacaaaatct 420 |||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||| Sbjct: 111400 tcttcaccaacacaatatatccattctccttttggtgaaacggaagctgcaaggaaatct 111459 Query: 421 nctccttcccgtttaccagatgagaaactttttacaacctgt 462 | |||||||||||||||||||| |||||||||||||||||| Sbjct: 111460 cccccttcccgtttaccagatgaaaaactttttacaacctgt 111501 Score = 91.7 bits (46), Expect = 2e-15 Identities = 87/101 (86%) Strand = Plus / Plus Query: 207 tcaaggcttccatatcttcatcatacaatcttgggcataggtggcaaccaagttcctgtg 266 ||||||||||||| | |||||| | ||||||| ||||| || |||| ||||||||| || Sbjct: 111042 tcaaggcttccatgttttcatcgtgcaatcttcagcataagtagcaatcaagttcctatg 111101 Query: 267 agggtggtgagtaatgccaatcacatncttgtcatggacct 307 |||||||||||| ||||| ||||||| |||||| ||||||| Sbjct: 111102 agggtggtgagtgatgcctatcacatccttgtcgtggacct 111142 Score = 83.8 bits (42), Expect = 6e-13 Identities = 51/54 (94%) Strand = Plus / Plus Query: 304 accttcattagatgctcaagtttaccggactgttggctaaagcaatacatgttc 357 ||||||||||||||||| |||||||||||||| | ||||||||||||||||||| Sbjct: 111256 accttcattagatgctccagtttaccggactggtagctaaagcaatacatgttc 111309
>gb|AY032884.1| Lycopersicon esculentum WD-40 repeat protein mRNA, complete cds Length = 1872 Score = 135 bits (68), Expect = 2e-28 Identities = 234/290 (80%) Strand = Plus / Minus Query: 271 tggtgagtaatgccaatcacatncttgtcatggaccttcattagatgctcaagtttaccg 330 |||||||| || ||||| |||| ||| ||||| |||||||| |||||||| ||||| Sbjct: 1579 tggtgagtgataccaattacatccttttcatgtaccttcatcagatgctccagtttgttt 1520 Query: 331 gactgttggctaaagcaatacatgttcatatcttcaccaacacagtatatccattctcct 390 || || | |||||||| |||| ||| | |||||||| ||||||||||||||||||||| Sbjct: 1519 gattgataactaaagcagtacaagtttctgtcttcacctacacagtatatccattctcct 1460 Query: 391 tttggtgaaactgaagctgcaacaaaatctnctccttcccgtttaccagatgagaaactt 450 |||||||| | |||| || ||||| ||| | ||||| | ||||||||||||||||||| Sbjct: 1459 tttggtgatagacaagcagccacaaagtctccaccttctcttttaccagatgagaaactt 1400 Query: 451 tttacaacctgtccttgtaaagtcatgatgtatattgacgaagtcttattgcagacaaca 510 || || ||||||||||| | ||||| | || || || || ||||||||||| || | | Sbjct: 1399 ttgacgacctgtccttgaagtgtcatcagataaatagatgatgtcttattgcacactata 1340 Query: 511 atgtgatcactattctttggaaacaaatggacagagttaacagatgcatc 560 ||||| ||| ||||||| || || | ||||||||| || ||||||||||| Sbjct: 1339 atgtgttcattattcttagggaaaagatggacagaattcacagatgcatc 1290
>ref|NM_106031.3| Arabidopsis thaliana nucleotide binding AT1G73720 mRNA, complete cds Length = 1802 Score = 107 bits (54), Expect = 4e-20 Identities = 199/248 (80%) Strand = Plus / Minus Query: 268 gggtggtgagtaatgccaatcacatncttgtcatggaccttcattagatgctcaagttta 327 |||||||| || || |||||||||| ||| ||||| ||| |||| | |||||||||| | Sbjct: 1532 gggtggtgtgttataccaatcacatccttctcatgcaccatcatgaaatgctcaagtcca 1473 Query: 328 ccggactgttggctaaagcaatacatgttcatatcttcaccaacacagtatatccattct 387 || || || | | | ||||| |||| ||| | ||||| || | ||||||||||| ||| Sbjct: 1472 ccagattgatagttgaagcagtacagtttcttgtcttcgccgatgcagtatatccaatct 1413 Query: 388 ccttttggtgaaactgaagctgcaacaaaatctnctccttcccgtttaccagatgagaaa 447 ||||||| || || | ||||| ||||||||| ||||||||| ||||| ||||||||| Sbjct: 1412 ccttttgtagatacacatgctgctacaaaatctcctccttccctattaccggatgagaaa 1353 Query: 448 ctttttacaacctgtccttgtaaagtcatgatgtatattgacgaagtcttattgcagaca 507 || || |||||||||||||| | ||||| |||||||| || || ||||| ||||| ||| Sbjct: 1352 ctcttcacaacctgtccttggagtgtcataatgtatatagatgatgtcttgttgcacaca 1293 Query: 508 acaatgtg 515 |||||||| Sbjct: 1292 acaatgtg 1285
>gb|AY102129.1| Arabidopsis thaliana At1g73720/F25P22_14 mRNA, complete cds Length = 1536 Score = 107 bits (54), Expect = 4e-20 Identities = 199/248 (80%) Strand = Plus / Minus Query: 268 gggtggtgagtaatgccaatcacatncttgtcatggaccttcattagatgctcaagttta 327 |||||||| || || |||||||||| ||| ||||| ||| |||| | |||||||||| | Sbjct: 1475 gggtggtgtgttataccaatcacatccttctcatgcaccatcatgaaatgctcaagtcca 1416 Query: 328 ccggactgttggctaaagcaatacatgttcatatcttcaccaacacagtatatccattct 387 || || || | | | ||||| |||| ||| | ||||| || | ||||||||||| ||| Sbjct: 1415 ccagattgatagttgaagcagtacagtttcttgtcttcgccgatgcagtatatccaatct 1356 Query: 388 ccttttggtgaaactgaagctgcaacaaaatctnctccttcccgtttaccagatgagaaa 447 ||||||| || || | ||||| ||||||||| ||||||||| ||||| ||||||||| Sbjct: 1355 ccttttgtagatacacatgctgctacaaaatctcctccttccctattaccggatgagaaa 1296 Query: 448 ctttttacaacctgtccttgtaaagtcatgatgtatattgacgaagtcttattgcagaca 507 || || |||||||||||||| | ||||| |||||||| || || ||||| ||||| ||| Sbjct: 1295 ctcttcacaacctgtccttggagtgtcataatgtatatagatgatgtcttgttgcacaca 1236 Query: 508 acaatgtg 515 |||||||| Sbjct: 1235 acaatgtg 1228
>gb|AF462796.1|AF462796 Arabidopsis thaliana At1g73720/F25P22_14 mRNA, complete cds Length = 1800 Score = 107 bits (54), Expect = 4e-20 Identities = 199/248 (80%) Strand = Plus / Minus Query: 268 gggtggtgagtaatgccaatcacatncttgtcatggaccttcattagatgctcaagttta 327 |||||||| || || |||||||||| ||| ||||| ||| |||| | |||||||||| | Sbjct: 1533 gggtggtgtgttataccaatcacatccttctcatgcaccatcatgaaatgctcaagtcca 1474 Query: 328 ccggactgttggctaaagcaatacatgttcatatcttcaccaacacagtatatccattct 387 || || || | | | ||||| |||| ||| | ||||| || | ||||||||||| ||| Sbjct: 1473 ccagattgatagttgaagcagtacagtttcttgtcttcgccgatgcagtatatccaatct 1414 Query: 388 ccttttggtgaaactgaagctgcaacaaaatctnctccttcccgtttaccagatgagaaa 447 ||||||| || || | ||||| ||||||||| ||||||||| ||||| ||||||||| Sbjct: 1413 ccttttgtagatacacatgctgctacaaaatctcctccttccctattaccggatgagaaa 1354 Query: 448 ctttttacaacctgtccttgtaaagtcatgatgtatattgacgaagtcttattgcagaca 507 || || |||||||||||||| | ||||| |||||||| || || ||||| ||||| ||| Sbjct: 1353 ctcttcacaacctgtccttggagtgtcataatgtatatagatgatgtcttgttgcacaca 1294 Query: 508 acaatgtg 515 |||||||| Sbjct: 1293 acaatgtg 1286
>emb|BX815659.1|CNS0AALF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS80ZF09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1658 Score = 107 bits (54), Expect = 4e-20 Identities = 199/248 (80%) Strand = Plus / Minus Query: 268 gggtggtgagtaatgccaatcacatncttgtcatggaccttcattagatgctcaagttta 327 |||||||| || || |||||||||| ||| ||||| ||| |||| | |||||||||| | Sbjct: 1506 gggtggtgtgttataccaatcacatccttctcatgcaccatcatgaaatgctcaagtcca 1447 Query: 328 ccggactgttggctaaagcaatacatgttcatatcttcaccaacacagtatatccattct 387 || || || | | | ||||| |||| ||| | ||||| || | ||||||||||| ||| Sbjct: 1446 ccagattgatagttgaagcagtacagtttcttgtcttcgccgatgcagtatatccaatct 1387 Query: 388 ccttttggtgaaactgaagctgcaacaaaatctnctccttcccgtttaccagatgagaaa 447 ||||||| || || | ||||| ||||||||| ||||||||| ||||| ||||||||| Sbjct: 1386 ccttttgtagatacacatgctgctacaaaatctcctccttccctattaccggatgagaaa 1327 Query: 448 ctttttacaacctgtccttgtaaagtcatgatgtatattgacgaagtcttattgcagaca 507 || || |||||||||||||| | ||||| |||||||| || || ||||| ||||| ||| Sbjct: 1326 ctcttcacaacctgtccttggagtgtcataatgtatatagatgatgtcttgttgcacaca 1267 Query: 508 acaatgtg 515 |||||||| Sbjct: 1266 acaatgtg 1259
>gb|AC012679.5|AC012679 Arabidopsis thaliana chromosome 1 BAC F25P22 genomic sequence, complete sequence Length = 105937 Score = 67.9 bits (34), Expect = 3e-08 Identities = 75/89 (84%) Strand = Plus / Minus Query: 373 cagtatatccattctccttttggtgaaactgaagctgcaacaaaatctnctccttcccgt 432 ||||||||||| |||||||||| || || | ||||| ||||||||| ||||||||| Sbjct: 57112 cagtatatccaatctccttttgtagatacacatgctgctacaaaatctcctccttcccta 57053 Query: 433 ttaccagatgagaaactttttacaacctg 461 ||||| ||||||||||| || |||||||| Sbjct: 57052 ttaccggatgagaaactcttcacaacctg 57024 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Minus Query: 457 acctgtccttgtaaagtcatgatgtatattgacgaagtcttattgcagacaacaatgtg 515 ||||||||||| | ||||| |||||||| || || ||||| ||||| ||||||||||| Sbjct: 56934 acctgtccttggagtgtcataatgtatatagatgatgtcttgttgcacacaacaatgtg 56876
>gb|AC142394.19| Medicago truncatula clone mth2-11d4, complete sequence Length = 111262 Score = 65.9 bits (33), Expect = 1e-07 Identities = 83/100 (83%) Strand = Plus / Plus Query: 361 tcttcaccaacacagtatatccattctccttttggtgaaactgaagctgcaacaaaatct 420 ||||||||||||||||| |||||||| ||||| ||||||| | |||||||| || ||| Sbjct: 54037 tcttcaccaacacagtaaatccattcccctttaggtgaaatgcaggctgcaacgaagtct 54096 Query: 421 nctccttcccgtttaccagatgagaaactttttacaacct 460 | || || | |||||| ||||||||||| || ||||||| Sbjct: 54097 ccgccctctcttttaccggatgagaaactcttcacaacct 54136 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 457 acctgtccttgtaaagtcatgatgtatattgacgaagtcttattgcagacaacaatgtga 516 ||||||||||| | ||||||||||||||||| || || || || || ||||||||||| Sbjct: 55134 acctgtccttgaagtgtcatgatgtatattgatgaggttttgttacaaacaacaatgtgt 55193 Query: 517 tcactattctt 527 ||| ||||||| Sbjct: 55194 tcagtattctt 55204
>gb|AC147435.22| Medicago truncatula clone mth2-19c18, complete sequence Length = 137284 Score = 65.9 bits (33), Expect = 1e-07 Identities = 83/100 (83%) Strand = Plus / Plus Query: 361 tcttcaccaacacagtatatccattctccttttggtgaaactgaagctgcaacaaaatct 420 ||||||||||||||||| |||||||| ||||| ||||||| | |||||||| || ||| Sbjct: 44372 tcttcaccaacacagtaaatccattcccctttaggtgaaatgcaggctgcaacgaagtct 44431 Query: 421 nctccttcccgtttaccagatgagaaactttttacaacct 460 | || || | |||||| ||||||||||| || ||||||| Sbjct: 44432 ccgccctctcttttaccggatgagaaactcttcacaacct 44471 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 457 acctgtccttgtaaagtcatgatgtatattgacgaagtcttattgcagacaacaatgtga 516 ||||||||||| | ||||||||||||||||| || || || || || ||||||||||| Sbjct: 45469 acctgtccttgaagtgtcatgatgtatattgatgaggttttgttacaaacaacaatgtgt 45528 Query: 517 tcactattctt 527 ||| ||||||| Sbjct: 45529 tcagtattctt 45539
>gb|AC149426.1| Populus trichocarpa clone Pop1-053A03, complete sequence Length = 148552 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 361 tcttcaccaacacagtatatccattctccttttggtgaaactgaagctgcaacaaaatct 420 |||||||||||||| || |||||||| ||||||||||| || | |||||| |||||||| Sbjct: 71764 tcttcaccaacacaatagatccattccccttttggtgatacacaggctgcagcaaaatct 71823
>gb|AC149425.1| Populus trichocarpa clone Pop1-041F22, complete sequence Length = 106128 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 361 tcttcaccaacacagtatatccattctccttttggtgaaactgaagctgcaacaaaatct 420 |||||||||||||| || |||||||| ||||||||||| || | |||||| |||||||| Sbjct: 70260 tcttcaccaacacaatagatccattccccttttggtgatacacaggctgcagcaaaatct 70319
>gb|AC149424.1| Populus trichocarpa clone Pop1-011N15, complete sequence Length = 152544 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 361 tcttcaccaacacagtatatccattctccttttggtgaaactgaagctgcaacaaaatct 420 |||||||||||||| || |||||||| ||||||||||| || | |||||| |||||||| Sbjct: 28650 tcttcaccaacacaatagatccattccccttttggtgatacacaggctgcagcaaaatct 28591
>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome Length = 2575032 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 205 agtcaaggcttccatatcttcatcata 231 |||| |||||||||||||||||||||| Sbjct: 914732 agtccaggcttccatatcttcatcata 914758
>gb|AC112970.18| Mus musculus chromosome 17, clone RP24-443D19, complete sequence Length = 172747 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 ggctaaagcaatacatgttca 358 ||||||||||||||||||||| Sbjct: 82710 ggctaaagcaatacatgttca 82690
>ref|XM_531809.2| PREDICTED: Canis familiaris similar to Phosphatidylinositol-glycan biosynthesis, class F protein (PIG-F), transcript variant 1 (LOC474580), mRNA Length = 912 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 145 aaaccaaatgcatcctctaaa 165 ||||||||||||||||||||| Sbjct: 242 aaaccaaatgcatcctctaaa 262
>emb|AL772218.29| Mouse DNA sequence from clone RP23-129K21 on chromosome 2, complete sequence Length = 218427 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 217 catatcttcatcatacaatcttgggcata 245 ||||| ||||||||||| ||||||||||| Sbjct: 140241 catattttcatcatacagtcttgggcata 140213
>emb|AL845173.4| Mouse DNA sequence from clone RP23-322G1 on chromosome 2, complete sequence Length = 194770 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 agttatccacattacaaaaac 148 ||||||||||||||||||||| Sbjct: 176796 agttatccacattacaaaaac 176776
>ref|NM_179565.1| Arabidopsis thaliana ACR3 AT1G76990 (ACR3) transcript variant AT1G76990.2 mRNA, complete cds Length = 2084 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 54 atcaatcctccaagtggttctata 77 |||||||||||||||| ||||||| Sbjct: 420 atcaatcctccaagtgtttctata 443
>ref|NM_179566.1| Arabidopsis thaliana ACR3 AT1G76990 (ACR3) transcript variant AT1G76990.3 mRNA, complete cds Length = 2198 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 54 atcaatcctccaagtggttctata 77 |||||||||||||||| ||||||| Sbjct: 534 atcaatcctccaagtgtttctata 557
>ref|NM_106350.2| Arabidopsis thaliana ACR3 AT1G76990 (ACR3) transcript variant AT1G76990.1 mRNA, complete cds Length = 1991 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 54 atcaatcctccaagtggttctata 77 |||||||||||||||| ||||||| Sbjct: 327 atcaatcctccaagtgtttctata 350
>ref|NM_001036212.1| Arabidopsis thaliana ACR3 AT1G76990 (ACR3) transcript variant AT1G76990.4 mRNA, complete cds Length = 1918 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 54 atcaatcctccaagtggttctata 77 |||||||||||||||| ||||||| Sbjct: 327 atcaatcctccaagtgtttctata 350
>ref|XM_636206.1| Dictyostelium discoideum hypothetical protein (DDB0206434), partial mRNA Length = 5115 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 cattacaaaaaccaaatgca 156 |||||||||||||||||||| Sbjct: 1420 cattacaaaaaccaaatgca 1401
>gb|AY369019.1| Nephrurus vertebralis NADH dehydrogenase subunit 1 (ND1) gene, partial cds; tRNA-Ile, tRNA-Gln, and tRNA-Met genes, complete sequence; NADH dehydrogenase subunit 2 (ND2) gene, complete cds; tRNA-Trp, tRNA-Ala, tRNA-Asn, tRNA-Cys, and tRNA-Tyr genes, complete sequence; and cytochrome c oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 1759 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 aactgaagctgcaacaaaat 418 |||||||||||||||||||| Sbjct: 476 aactgaagctgcaacaaaat 495
>gb|AY369018.1| Nephrurus levis NADH dehydrogenase subunit 1 (ND1) gene, partial cds; tRNA-Ile, tRNA-Gln, and tRNA-Met genes, complete sequence; NADH dehydrogenase subunit 2 (ND2) gene, complete cds; tRNA-Trp, tRNA-Ala, tRNA-Asn, tRNA-Cys, and tRNA-Tyr genes, complete sequence; and cytochrome c oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 1763 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 aactgaagctgcaacaaaat 418 |||||||||||||||||||| Sbjct: 477 aactgaagctgcaacaaaat 496
>gb|AC163492.3| Mus musculus chromosome 18, clone RP23-411L20, complete sequence Length = 201822 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 agcaatacatgttcatatct 363 |||||||||||||||||||| Sbjct: 83739 agcaatacatgttcatatct 83720
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 tatccacattacaaaaacca 150 |||||||||||||||||||| Sbjct: 34256604 tatccacattacaaaaacca 34256623
>emb|CT009560.9| Pig DNA sequence from clone CH242-4C12 on chromosome 17, complete sequence Length = 166118 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ccaagttcctgtgagggtgg 273 |||||||||||||||||||| Sbjct: 98754 ccaagttcctgtgagggtgg 98735
>emb|AL357055.18| Human DNA sequence from clone RP11-389O22 on chromosome 1 Contains the 3' end of a novel gene, the 5' end of a novel gene, the LRIG2 gene for leucine-rich repeats and immunoglobulin-like domains 2, a ring finger protein 12 (RNF12) pseudogene, a ribosomal protein S19 (RPS19) pseudogene, a ribosomal protein S15 (RPS15) pseudogene and a CpG island, complete sequence Length = 188812 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 agtatatccattctcctttt 393 |||||||||||||||||||| Sbjct: 68763 agtatatccattctcctttt 68782
>gb|AY113891.1| Arabidopsis thaliana unknown protein (At1g76990) mRNA, complete cds Length = 1393 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 54 atcaatcctccaagtggttctata 77 |||||||||||||||| ||||||| Sbjct: 58 atcaatcctccaagtgtttctata 81
>gb|AF360322.1| Arabidopsis thaliana unknown protein (At1g76990) mRNA, complete cds Length = 1880 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 54 atcaatcctccaagtggttctata 77 |||||||||||||||| ||||||| Sbjct: 301 atcaatcctccaagtgtttctata 324
>gb|AC091211.3| Drosophila melanogaster 3L BAC RP98-26E12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 194589 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 ggcttccatatcttcatcat 230 |||||||||||||||||||| Sbjct: 159696 ggcttccatatcttcatcat 159715
>gb|AC091228.3| Drosophila melanogaster 3L BAC RP98-10L9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 156142 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 ggcttccatatcttcatcat 230 |||||||||||||||||||| Sbjct: 84689 ggcttccatatcttcatcat 84670
>gb|AC068688.10| Homo sapiens chromosome 18, clone RP11-10C23, complete sequence Length = 108479 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 ttcatatcttcaccaacaca 374 |||||||||||||||||||| Sbjct: 71502 ttcatatcttcaccaacaca 71483
>ref|NM_168179.1| Drosophila melanogaster CG32394-PA (CG32394) mRNA, complete cds Length = 8274 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 ggcttccatatcttcatcat 230 |||||||||||||||||||| Sbjct: 1559 ggcttccatatcttcatcat 1540
>gb|AC021760.9| Homo sapiens chromosome 8, clone RP11-433L7, complete sequence Length = 183059 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 acattacaaaaaccaaatgc 155 |||||||||||||||||||| Sbjct: 160178 acattacaaaaaccaaatgc 160197
>ref|XM_684680.1| PREDICTED: Danio rerio similar to UDP-GalNAc:polypeptide, N-acetylgalactosaminyltransferase (LOC561278), mRNA Length = 984 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gttcctgtgagggtggtgag 277 |||||||||||||||||||| Sbjct: 382 gttcctgtgagggtggtgag 401
>gb|DP000052.1| Sus scrofa target 126 genomic scaffold Length = 432382 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 355 ttcatatcttcaccaacacagtat 378 |||||| ||||||||||||||||| Sbjct: 298484 ttcataccttcaccaacacagtat 298461
>gb|AY134575.1| Aprasia parapulchella NADH dehydrogenase subunit 2 (ND2) gene, partial cds; mitochondrial Length = 1217 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 aactgaagctgcaacaaaat 418 |||||||||||||||||||| Sbjct: 155 aactgaagctgcaacaaaat 174
>gb|AC109506.21| Mus musculus chromosome 7, clone RP23-344G21, complete sequence Length = 227676 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 aactgaagctgcaacaaaat 418 |||||||||||||||||||| Sbjct: 150391 aactgaagctgcaacaaaat 150410
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 tatccacattacaaaaacca 150 |||||||||||||||||||| Sbjct: 34347076 tatccacattacaaaaacca 34347095
>emb|BX817057.1|CNS0AAI3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH83ZA07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1893 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 54 atcaatcctccaagtggttctata 77 |||||||||||||||| ||||||| Sbjct: 277 atcaatcctccaagtgtttctata 300
>gb|AY087972.1| Arabidopsis thaliana clone 40049 mRNA, complete sequence Length = 1844 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 54 atcaatcctccaagtggttctata 77 |||||||||||||||| ||||||| Sbjct: 316 atcaatcctccaagtgtttctata 339
>gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genomic sequence, complete sequence Length = 143205 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 tatccacattacaaaaacca 150 |||||||||||||||||||| Sbjct: 78394 tatccacattacaaaaacca 78375
>gb|AF528059.1| Arabidopsis thaliana ACR3 (ACR3) mRNA, complete cds Length = 1787 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 54 atcaatcctccaagtggttctata 77 |||||||||||||||| ||||||| Sbjct: 250 atcaatcctccaagtgtttctata 273
>emb|BX927400.10| Zebrafish DNA sequence from clone CH211-195K18 in linkage group 19, complete sequence Length = 172655 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 336 ttggctaaagcaatacatgttcat 359 |||||||||||||||||| ||||| Sbjct: 91151 ttggctaaagcaatacattttcat 91128
>gb|AC109499.21| Mus musculus chromosome 18, clone RP23-349E12, complete sequence Length = 190594 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 agcaatacatgttcatatct 363 |||||||||||||||||||| Sbjct: 11528 agcaatacatgttcatatct 11547
>gb|AE003561.3| Drosophila melanogaster chromosome 3L, section 24 of 83 of the complete sequence Length = 274289 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 ggcttccatatcttcatcat 230 |||||||||||||||||||| Sbjct: 87284 ggcttccatatcttcatcat 87303
>gb|AC107371.17| Mus musculus chromosome 7, clone RP24-66D2, complete sequence Length = 214373 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 ccaaatgcatcctctaaatt 167 |||||||||||||||||||| Sbjct: 198354 ccaaatgcatcctctaaatt 198373
>gb|AC111041.11| Mus musculus chromosome 7, clone RP24-67N23, complete sequence Length = 175930 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 ccaaatgcatcctctaaatt 167 |||||||||||||||||||| Sbjct: 68303 ccaaatgcatcctctaaatt 68322
>gb|AC002375.1|AC002375 Homo sapiens 12q24 PAC RPCI1-74B13 (Roswell Park Cancer Institute Human PAC library) complete sequence Length = 102579 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 371 cacagtatatccattctccttttggtga 398 |||||| ||||| ||||||||||||||| Sbjct: 15129 cacagtttatcccttctccttttggtga 15156 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,222,166 Number of Sequences: 3902068 Number of extensions: 5222166 Number of successful extensions: 92725 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92508 Number of HSP's gapped (non-prelim): 209 length of query: 567 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 544 effective length of database: 17,143,297,704 effective search space: 9325953950976 effective search space used: 9325953950976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)