| Clone Name | rbags6m08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ267106.1| Triticum urartu clone BAC 210J24 chromosome 4A, complete sequence Length = 111912 Score = 539 bits (272), Expect = e-150 Identities = 336/355 (94%), Gaps = 2/355 (0%) Strand = Plus / Minus Query: 20 acatatgctaggatcgtcgaatggctctgaagnaacttttt-gcctctcggctctccctt 78 |||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||| Sbjct: 75772 acatatgctaggatcgtcgaatggttctgaagaaacttttttgcctctcggctctccctt 75713 Query: 79 aaatggaaaattttccccgcaactgtatattcgtgttcccccagtatgaaatgttaagca 138 ||||||| ||| || |||||||||||||||| ||||||||||||||||||| ||||||| Sbjct: 75712 aaatggagaatctttcccgcaactgtatatttatgttcccccagtatgaaatcttaagca 75653 Query: 139 ccacatttacaaggctaaggagaaacctgctttcagtgaaagatggctgtgtaattttcc 198 |||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||| Sbjct: 75652 ccacatttacaaggctaaggagaaacctgctttctgtgagagatggatgtgtaattttcc 75593 Query: 199 cttgcaaaggggaac-tgtattgggtctatcaaacttctaagctaacatcagaagcatca 257 ||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||| Sbjct: 75592 cttgcaaaggggaacctgtatcgagtctatcaaacttctaagctaacatcagaagcatca 75533 Query: 258 ctggcttcactgttattctgctgtgaccacagttcagcataccgcccgccctttgacaga 317 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75532 ctggcttcactgttgttctgctgtgaccacagttcagcataccgcccgccctttgacaga 75473 Query: 318 agaaaatcatgtgatccttgttccactactgttccattctccagtacaatgatct 372 ||||||||||||| |||||||||||||||||||||||||||||| || ||||||| Sbjct: 75472 agaaaatcatgtggtccttgttccactactgttccattctccaggacgatgatct 75418 Score = 182 bits (92), Expect = 1e-42 Identities = 122/132 (92%) Strand = Plus / Minus Query: 375 tcgcattgcattgcggttgtgagtcggtgagcgataaaaattgaggtacgatcaacggat 434 |||||||||||||| || ||||| ||||||||||||||||||||||||||||| || || Sbjct: 75178 tcgcattgcattgcagtcgtgagccggtgagcgataaaaattgaggtacgatcgaccgac 75119 Query: 435 aaagacatcagagaattcaaaatagatgcttcggtagtgctatcgagtgcacttgtagct 494 || |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| Sbjct: 75118 aaggacatcagagaattcaaaatcgatgcttcagtagtgctatcgagtgcgcttgtagct 75059 Query: 495 tcatcacataat 506 |||||||||||| Sbjct: 75058 tcatcacataat 75047 Score = 174 bits (88), Expect = 2e-40 Identities = 97/100 (97%) Strand = Plus / Minus Query: 567 cttaacttcaatccacgctctcccacgactgtgtcatacttgtcaggaaaattcataatt 626 |||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct: 67754 cttaccttcaatccacgctctcccacaactgtgtcatacttgtcaggaaagttcataatt 67695 Query: 627 gtatcatggatagaagcacgtcgagcagcatcataaacct 666 |||||||||||||||||||||||||||||||||||||||| Sbjct: 67694 gtatcatggatagaagcacgtcgagcagcatcataaacct 67655 Score = 133 bits (67), Expect = 8e-28 Identities = 67/67 (100%) Strand = Plus / Minus Query: 507 agaatggaaggctccttcaagaatacacgagcaattgacactcgttgtttctcaccacca 566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67921 agaatggaaggctccttcaagaatacacgagcaattgacactcgttgtttctcaccacca 67862 Query: 567 cttaact 573 ||||||| Sbjct: 67861 cttaact 67855 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 663 acctcttcatcagttgctgataaccg 688 |||||||||||||||||||||||||| Sbjct: 67545 acctcttcatcagttgctgataaccg 67520
>dbj|AK064342.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-H07, full insert sequence Length = 2522 Score = 444 bits (224), Expect = e-121 Identities = 431/499 (86%), Gaps = 2/499 (0%) Strand = Plus / Minus Query: 192 attttcccttgcaaaggggaact--gtattgggtctatcaaacttctaagctaacatcag 249 ||||||||||||||| ||||| | |||| |||||| |||| ||||||||||| | | Sbjct: 2293 attttcccttgcaaaagggaattatgtatatagtctatgaaacctctaagctaaccgcgg 2234 Query: 250 aagcatcactggcttcactgttattctgctgtgaccacagttcagcataccgcccgccct 309 |||||| |||| ||||||||||||||||||||||||| ||||||||| || || |||| Sbjct: 2233 cagcatcgatggcatcactgttattctgctgtgaccacaattcagcatatcggccaccct 2174 Query: 310 ttgacagaagaaaatcatgtgatccttgttccactactgttccattctccagtacaatga 369 ||||||| ||||||||||||| ||||||||||||||| |||||||||| ||||| | Sbjct: 2173 ttgacagcagaaaatcatgtggtccttgttccactacctccccattctccaaaacaataa 2114 Query: 370 tctcatcgcattgcattgcggttgtgagtcggtgagcgataaaaattgaggtacgatcaa 429 ||||||| ||||||||||| ||||| ||||| || || ||||| || |||||||| |||| Sbjct: 2113 tctcatcacattgcattgcagttgtcagtcgatgtgcaataaagatagaggtacggtcaa 2054 Query: 430 cggataaagacatcagagaattcaaaatagatgcttcggtagtgctatcgagtgcacttg 489 |||| |||| | |||||||||| ||||| || |||||||| |||||||| || || |||| Sbjct: 2053 cggacaaagtcttcagagaatttaaaattgacgcttcggtggtgctatcaagagcgcttg 1994 Query: 490 tagcttcatcacataatagaatggaaggctccttcaagaatacacgagcaattgacactc 549 ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 1993 tagcttcatcacacaatagaatggaaggttccttcaagaatacacgagcaattgatactc 1934 Query: 550 gttgtttctcaccaccacttaacttcaatccacgctctcccacgactgtgtcatacttgt 609 |||||||||| ||||| |||||||| ||||| ||||||||||| ||||||| ||||||| Sbjct: 1933 gttgtttctccccaccgcttaactttaatcctcgctctcccacaactgtgttgtacttgt 1874 Query: 610 caggaaaattcataattgtatcatggatagaagcacgtcgagcagcatcataaacctctt 669 ||||||| ||||||||||||||||| |||| ||| || || ||| | ||||||||||| | Sbjct: 1873 caggaaagttcataattgtatcatgaatagcagcccggcgggcaacgtcataaacctcct 1814 Query: 670 catcagttgctgataaccg 688 |||| |||||||||||||| Sbjct: 1813 catctgttgctgataaccg 1795
>ref|NM_185480.1| Oryza sativa (japonica cultivar-group), Ozsa8577 predicted mRNA Length = 2811 Score = 438 bits (221), Expect = e-119 Identities = 404/465 (86%) Strand = Plus / Minus Query: 224 ctatcaaacttctaagctaacatcagaagcatcactggcttcactgttattctgctgtga 283 |||| |||| ||||||||||| | | |||||| |||| |||||||||||||||||||| Sbjct: 2811 ctatgaaacctctaagctaaccgcggcagcatcgatggcatcactgttattctgctgtga 2752 Query: 284 ccacagttcagcataccgcccgccctttgacagaagaaaatcatgtgatccttgttccac 343 ||||| ||||||||| || || ||||||||||| ||||||||||||| |||||||||||| Sbjct: 2751 ccacaattcagcatatcggccaccctttgacagcagaaaatcatgtggtccttgttccac 2692 Query: 344 tactgttccattctccagtacaatgatctcatcgcattgcattgcggttgtgagtcggtg 403 ||| |||||||||| ||||| |||||||| ||||||||||| ||||| ||||| || Sbjct: 2691 tacctccccattctccaaaacaataatctcatcacattgcattgcagttgtcagtcgatg 2632 Query: 404 agcgataaaaattgaggtacgatcaacggataaagacatcagagaattcaaaatagatgc 463 || ||||| || |||||||| |||||||| |||| | |||||||||| ||||| || || Sbjct: 2631 tgcaataaagatagaggtacggtcaacggacaaagtcttcagagaatttaaaattgacgc 2572 Query: 464 ttcggtagtgctatcgagtgcacttgtagcttcatcacataatagaatggaaggctcctt 523 |||||| |||||||| || || ||||||||||||||||| |||||||||||||| ||||| Sbjct: 2571 ttcggtggtgctatcaagagcgcttgtagcttcatcacacaatagaatggaaggttcctt 2512 Query: 524 caagaatacacgagcaattgacactcgttgtttctcaccaccacttaacttcaatccacg 583 ||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||| || Sbjct: 2511 caagaatacacgagcaattgatactcgttgtttctccccaccgcttaactttaatcctcg 2452 Query: 584 ctctcccacgactgtgtcatacttgtcaggaaaattcataattgtatcatggatagaagc 643 ||||||||| ||||||| |||||||||||||| ||||||||||||||||| |||| ||| Sbjct: 2451 ctctcccacaactgtgttgtacttgtcaggaaagttcataattgtatcatgaatagcagc 2392 Query: 644 acgtcgagcagcatcataaacctcttcatcagttgctgataaccg 688 || || ||| | ||||||||||| ||||| |||||||||||||| Sbjct: 2391 ccggcgggcaacgtcataaacctcctcatctgttgctgataaccg 2347
>dbj|AK102879.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112G11, full insert sequence Length = 1193 Score = 436 bits (220), Expect = e-119 Identities = 430/499 (86%), Gaps = 2/499 (0%) Strand = Plus / Minus Query: 192 attttcccttgcaaaggggaact--gtattgggtctatcaaacttctaagctaacatcag 249 ||||||||||||||| ||||| | |||| |||||| |||| ||||||||||| | | Sbjct: 964 attttcccttgcaaaagggaattatgtatatagtctatgaaacctctaagctaaccgcgg 905 Query: 250 aagcatcactggcttcactgttattctgctgtgaccacagttcagcataccgcccgccct 309 |||||| |||| ||||||||||||||||||||||||| ||||||||| || || |||| Sbjct: 904 cagcatcgatggcatcactgttattctgctgtgaccacaattcagcatatcggccaccct 845 Query: 310 ttgacagaagaaaatcatgtgatccttgttccactactgttccattctccagtacaatga 369 ||||||| ||||||||||||| ||||||||||||||| |||||||||| ||||| | Sbjct: 844 ttgacagcagaaaatcatgtggtccttgttccactacctccccattctccaaaacaataa 785 Query: 370 tctcatcgcattgcattgcggttgtgagtcggtgagcgataaaaattgaggtacgatcaa 429 ||||||| ||||||||||| ||||| ||||| || || ||||| || |||||||| |||| Sbjct: 784 tctcatcacattgcattgcagttgtcagtcgatgtgcaataaagatagaggtacggtcaa 725 Query: 430 cggataaagacatcagagaattcaaaatagatgcttcggtagtgctatcgagtgcacttg 489 |||| |||| | |||||||||| ||||| || |||||||| |||||||| || || |||| Sbjct: 724 cggacaaagtcttcagagaatttaaaattgacgcttcggtggtgctatcaagagcgcttg 665 Query: 490 tagcttcatcacataatagaatggaaggctccttcaagaatacacgagcaattgacactc 549 ||||||||||||| |||||||||||||| ||| |||||||||||||||||||||| |||| Sbjct: 664 tagcttcatcacacaatagaatggaaggttccctcaagaatacacgagcaattgatactc 605 Query: 550 gttgtttctcaccaccacttaacttcaatccacgctctcccacgactgtgtcatacttgt 609 |||||||||| ||||| |||||||| ||||| ||||||||||| ||||||| ||||||| Sbjct: 604 gttgtttctccccaccgcttaactttaatcctcgctctcccacaactgtgttgtacttgt 545 Query: 610 caggaaaattcataattgtatcatggatagaagcacgtcgagcagcatcataaacctctt 669 ||||||| ||||||||||||||||| |||| ||| || || ||| | ||||||||||| | Sbjct: 544 caggaaagttcataattgtatcatgaatagcagcccggcgggcaacgtcataaacctcct 485 Query: 670 catcagttgctgataaccg 688 |||| |||||||||||||| Sbjct: 484 catctgttgctgataaccg 466
>dbj|AK072699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139I17, full insert sequence Length = 2728 Score = 414 bits (209), Expect = e-112 Identities = 429/500 (85%), Gaps = 3/500 (0%) Strand = Plus / Minus Query: 192 attttcccttgcaaaggggaact--gtattgggtctatcaaacttctaagctaacatcag 249 ||||||||||||||| ||||| | |||| |||||| |||| ||||||||||| | | Sbjct: 2499 attttcccttgcaaaagggaattatgtatatagtctatgaaacctctaagctaaccgcgg 2440 Query: 250 aagcatcactggcttcactgttattctgctgtgaccacagttcagcataccgcccgccct 309 |||||| |||| ||||||||||||||||||||||||| ||||||||| || || |||| Sbjct: 2439 cagcatcgatggcatcactgttattctgctgtgaccacaattcagcatatcggccaccct 2380 Query: 310 ttgacagaagaaaatcatgtgatccttgttccactactgttccattctccagtacaatga 369 ||||||| ||||||||||||| ||||||||||||||| |||||||||| ||||| | Sbjct: 2379 ttgacagcagaaaatcatgtggtccttgttccactacctccccattctccaaaacaataa 2320 Query: 370 tctcatcgcattgcattgcggttgtgagtcggtgagcgataaaaattgaggtacgatcaa 429 ||||||| ||||||||||| ||||| ||||| || || ||||| || |||||||| |||| Sbjct: 2319 tctcatcacattgcattgcagttgtcagtcgatgtgcaataaagatagaggtacggtcaa 2260 Query: 430 cggataaagacatcagagaattcaaaatagatgcttcggtagtgctatcgagtgcacttg 489 |||| |||| | |||||||||| ||||| || |||||||| |||||||| || || |||| Sbjct: 2259 cggacaaagtcttcagagaatttaaaattgacgcttcggtggtgctatcaagagcgcttg 2200 Query: 490 tagcttcatcacataatagaatggaaggctccttcaagaatacacgagcaattgacactc 549 ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 2199 tagcttcatcacacaatagaatggaaggttccttcaagaatacacgagcaattgatactc 2140 Query: 550 gttgtttctcaccaccacttaacttcaatccacgctctcccacgactgtgtcatacttgt 609 |||||||||| ||||| |||||||| ||||| ||||||||||| ||||||| ||||||| Sbjct: 2139 gttgtttctccccaccgcttaactttaatcctcgctctcccacaactgtgttgtacttgt 2080 Query: 610 caggaaaattcataattgtatcatggatagaag-cacgtcgagcagcatcataaacctct 668 ||||||| ||||||||||||||||| |||| || | | | ||| | ||||||||||| Sbjct: 2079 caggaaagttcataattgtatcatgaatagcagccggggggggcaacgtcataaacctcc 2020 Query: 669 tcatcagttgctgataaccg 688 ||||| |||||||||||||| Sbjct: 2019 tcatctgttgctgataaccg 2000
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 131 bits (66), Expect = 3e-27 Identities = 135/157 (85%), Gaps = 2/157 (1%) Strand = Plus / Plus Query: 192 attttcccttgcaaaggggaact--gtattgggtctatcaaacttctaagctaacatcag 249 ||||||||||||||| ||||| | |||| |||||| |||| ||||||||||| | | Sbjct: 1492139 attttcccttgcaaaagggaattatgtatatagtctatgaaacctctaagctaaccgcgg 1492198 Query: 250 aagcatcactggcttcactgttattctgctgtgaccacagttcagcataccgcccgccct 309 |||||| |||| ||||||||||||||||||||||||| ||||||||| || || |||| Sbjct: 1492199 cagcatcgatggcatcactgttattctgctgtgaccacaattcagcatatcggccaccct 1492258 Query: 310 ttgacagaagaaaatcatgtgatccttgttccactac 346 ||||||| ||||||||||||| ||||||||||||||| Sbjct: 1492259 ttgacagcagaaaatcatgtggtccttgttccactac 1492295 Score = 111 bits (56), Expect = 3e-21 Identities = 113/132 (85%) Strand = Plus / Plus Query: 371 ctcatcgcattgcattgcggttgtgagtcggtgagcgataaaaattgaggtacgatcaac 430 |||||| ||||||||||| ||||| ||||| || || ||||| || |||||||| ||||| Sbjct: 1492631 ctcatcacattgcattgcagttgtcagtcgatgtgcaataaagatagaggtacggtcaac 1492690 Query: 431 ggataaagacatcagagaattcaaaatagatgcttcggtagtgctatcgagtgcacttgt 490 ||| |||| | |||||||||| ||||| || |||||||| |||||||| || || ||||| Sbjct: 1492691 ggacaaagtcttcagagaatttaaaattgacgcttcggtggtgctatcaagagcgcttgt 1492750 Query: 491 agcttcatcaca 502 |||||||||||| Sbjct: 1492751 agcttcatcaca 1492762 Score = 101 bits (51), Expect = 3e-18 Identities = 63/67 (94%) Strand = Plus / Plus Query: 507 agaatggaaggctccttcaagaatacacgagcaattgacactcgttgtttctcaccacca 566 ||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 1493048 agaatggaaggttccttcaagaatacacgagcaattgatactcgttgtttctccccaccg 1493107 Query: 567 cttaact 573 ||||||| Sbjct: 1493108 cttaact 1493114 Score = 85.7 bits (43), Expect = 2e-13 Identities = 79/91 (86%) Strand = Plus / Plus Query: 576 aatccacgctctcccacgactgtgtcatacttgtcaggaaaattcataattgtatcatgg 635 ||||| ||||||||||| ||||||| |||||||||||||| ||||||||||||||||| Sbjct: 1493217 aatcctcgctctcccacaactgtgttgtacttgtcaggaaagttcataattgtatcatga 1493276 Query: 636 atagaagcacgtcgagcagcatcataaacct 666 |||| ||| || || ||| | |||||||||| Sbjct: 1493277 atagcagcccggcgggcaacgtcataaacct 1493307
>dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22 Length = 101666 Score = 131 bits (66), Expect = 3e-27 Identities = 135/157 (85%), Gaps = 2/157 (1%) Strand = Plus / Plus Query: 192 attttcccttgcaaaggggaact--gtattgggtctatcaaacttctaagctaacatcag 249 ||||||||||||||| ||||| | |||| |||||| |||| ||||||||||| | | Sbjct: 99425 attttcccttgcaaaagggaattatgtatatagtctatgaaacctctaagctaaccgcgg 99484 Query: 250 aagcatcactggcttcactgttattctgctgtgaccacagttcagcataccgcccgccct 309 |||||| |||| ||||||||||||||||||||||||| ||||||||| || || |||| Sbjct: 99485 cagcatcgatggcatcactgttattctgctgtgaccacaattcagcatatcggccaccct 99544 Query: 310 ttgacagaagaaaatcatgtgatccttgttccactac 346 ||||||| ||||||||||||| ||||||||||||||| Sbjct: 99545 ttgacagcagaaaatcatgtggtccttgttccactac 99581 Score = 111 bits (56), Expect = 3e-21 Identities = 113/132 (85%) Strand = Plus / Plus Query: 371 ctcatcgcattgcattgcggttgtgagtcggtgagcgataaaaattgaggtacgatcaac 430 |||||| ||||||||||| ||||| ||||| || || ||||| || |||||||| ||||| Sbjct: 99917 ctcatcacattgcattgcagttgtcagtcgatgtgcaataaagatagaggtacggtcaac 99976 Query: 431 ggataaagacatcagagaattcaaaatagatgcttcggtagtgctatcgagtgcacttgt 490 ||| |||| | |||||||||| ||||| || |||||||| |||||||| || || ||||| Sbjct: 99977 ggacaaagtcttcagagaatttaaaattgacgcttcggtggtgctatcaagagcgcttgt 100036 Query: 491 agcttcatcaca 502 |||||||||||| Sbjct: 100037 agcttcatcaca 100048 Score = 101 bits (51), Expect = 3e-18 Identities = 63/67 (94%) Strand = Plus / Plus Query: 507 agaatggaaggctccttcaagaatacacgagcaattgacactcgttgtttctcaccacca 566 ||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 100334 agaatggaaggttccttcaagaatacacgagcaattgatactcgttgtttctccccaccg 100393 Query: 567 cttaact 573 ||||||| Sbjct: 100394 cttaact 100400 Score = 85.7 bits (43), Expect = 2e-13 Identities = 79/91 (86%) Strand = Plus / Plus Query: 576 aatccacgctctcccacgactgtgtcatacttgtcaggaaaattcataattgtatcatgg 635 ||||| ||||||||||| ||||||| |||||||||||||| ||||||||||||||||| Sbjct: 100503 aatcctcgctctcccacaactgtgttgtacttgtcaggaaagttcataattgtatcatga 100562 Query: 636 atagaagcacgtcgagcagcatcataaacct 666 |||| ||| || || ||| | |||||||||| Sbjct: 100563 atagcagcccggcgggcaacgtcataaacct 100593
>dbj|AP000391.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0538C01 Length = 155643 Score = 131 bits (66), Expect = 3e-27 Identities = 135/157 (85%), Gaps = 2/157 (1%) Strand = Plus / Plus Query: 192 attttcccttgcaaaggggaact--gtattgggtctatcaaacttctaagctaacatcag 249 ||||||||||||||| ||||| | |||| |||||| |||| ||||||||||| | | Sbjct: 20863 attttcccttgcaaaagggaattatgtatatagtctatgaaacctctaagctaaccgcgg 20922 Query: 250 aagcatcactggcttcactgttattctgctgtgaccacagttcagcataccgcccgccct 309 |||||| |||| ||||||||||||||||||||||||| ||||||||| || || |||| Sbjct: 20923 cagcatcgatggcatcactgttattctgctgtgaccacaattcagcatatcggccaccct 20982 Query: 310 ttgacagaagaaaatcatgtgatccttgttccactac 346 ||||||| ||||||||||||| ||||||||||||||| Sbjct: 20983 ttgacagcagaaaatcatgtggtccttgttccactac 21019 Score = 111 bits (56), Expect = 3e-21 Identities = 113/132 (85%) Strand = Plus / Plus Query: 371 ctcatcgcattgcattgcggttgtgagtcggtgagcgataaaaattgaggtacgatcaac 430 |||||| ||||||||||| ||||| ||||| || || ||||| || |||||||| ||||| Sbjct: 21355 ctcatcacattgcattgcagttgtcagtcgatgtgcaataaagatagaggtacggtcaac 21414 Query: 431 ggataaagacatcagagaattcaaaatagatgcttcggtagtgctatcgagtgcacttgt 490 ||| |||| | |||||||||| ||||| || |||||||| |||||||| || || ||||| Sbjct: 21415 ggacaaagtcttcagagaatttaaaattgacgcttcggtggtgctatcaagagcgcttgt 21474 Query: 491 agcttcatcaca 502 |||||||||||| Sbjct: 21475 agcttcatcaca 21486 Score = 101 bits (51), Expect = 3e-18 Identities = 63/67 (94%) Strand = Plus / Plus Query: 507 agaatggaaggctccttcaagaatacacgagcaattgacactcgttgtttctcaccacca 566 ||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 21772 agaatggaaggttccttcaagaatacacgagcaattgatactcgttgtttctccccaccg 21831 Query: 567 cttaact 573 ||||||| Sbjct: 21832 cttaact 21838 Score = 85.7 bits (43), Expect = 2e-13 Identities = 79/91 (86%) Strand = Plus / Plus Query: 576 aatccacgctctcccacgactgtgtcatacttgtcaggaaaattcataattgtatcatgg 635 ||||| ||||||||||| ||||||| |||||||||||||| ||||||||||||||||| Sbjct: 21941 aatcctcgctctcccacaactgtgttgtacttgtcaggaaagttcataattgtatcatga 22000 Query: 636 atagaagcacgtcgagcagcatcataaacct 666 |||| ||| || || ||| | |||||||||| Sbjct: 22001 atagcagcccggcgggcaacgtcataaacct 22031
>ref|XM_396202.2| PREDICTED: Apis mellifera similar to ENSANGP00000013018 (LOC412749), mRNA Length = 3713 Score = 56.0 bits (28), Expect = 2e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 546 actcgttgtttctcaccaccacttaacttcaatccacgctctcc 589 ||||||||||| |||||||||||||| ||||| ||||| ||||| Sbjct: 2162 actcgttgtttttcaccaccacttaatttcaaaccacgttctcc 2119
>emb|AL603753.3| Human DNA sequence from clone RP13-11B7 on chromosome Xp11.4-21.2 Contains the 3' end of a novel gene (FLJ36601), complete sequence Length = 138166 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 443 cagagaattcaaaatagatgctt 465 ||||||||||||||||||||||| Sbjct: 76579 cagagaattcaaaatagatgctt 76557
>gb|AC084326.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-329J17, complete sequence Length = 149941 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 227 tcaaacttctaagctaacatca 248 |||||||||||||||||||||| Sbjct: 89273 tcaaacttctaagctaacatca 89252
>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete genome Length = 2516575 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Plus Query: 482 tgcacttgtagcttcatcacataata 507 ||||||||| |||||||||||||||| Sbjct: 1947941 tgcacttgtcgcttcatcacataata 1947966
>gb|AC164116.4| Mus musculus BAC clone RP24-242F4 from chromosome 13, complete sequence Length = 155449 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 312 gacagaagaaaatcatgtgat 332 ||||||||||||||||||||| Sbjct: 106232 gacagaagaaaatcatgtgat 106212 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 gacagaagaaaatcatgtga 331 |||||||||||||||||||| Sbjct: 51982 gacagaagaaaatcatgtga 51963
>gb|AC154510.2| Mus musculus BAC clone RP23-210I20 from chromosome 13, complete sequence Length = 186169 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 312 gacagaagaaaatcatgtgat 332 ||||||||||||||||||||| Sbjct: 640 gacagaagaaaatcatgtgat 660 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 gacagaagaaaatcatgtga 331 |||||||||||||||||||| Sbjct: 54945 gacagaagaaaatcatgtga 54964
>gb|AE014308.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 5 of 11 of the complete sequence Length = 250029 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 443 cagagaattcaaaatagatgc 463 ||||||||||||||||||||| Sbjct: 93069 cagagaattcaaaatagatgc 93049
>gb|AC116325.5| Mus musculus BAC clone RP23-295K3 from 10, complete sequence Length = 196265 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 483 gcacttgtagcttcatcacat 503 ||||||||||||||||||||| Sbjct: 29204 gcacttgtagcttcatcacat 29224
>gb|AY438976.1| Homo sapiens tumor necrosis factor receptor superfamily, member 9 (TNFRSF9) gene, complete cds Length = 23722 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 348 gttccattctccagtacaatg 368 ||||||||||||||||||||| Sbjct: 11693 gttccattctccagtacaatg 11713
>gb|AC144728.11| Medicago truncatula clone mth2-6g7, complete sequence Length = 105161 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 480 agtgcacttgtagcttcatca 500 ||||||||||||||||||||| Sbjct: 68206 agtgcacttgtagcttcatca 68186 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 agtgcacttgtagcttcatc 499 |||||||||||||||||||| Sbjct: 49285 agtgcacttgtagcttcatc 49266
>emb|AL163206.2|HS21C006 Homo sapiens chromosome 21 segment HS21C006 Length = 340000 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 442 tcagagaattcaaaatagatg 462 ||||||||||||||||||||| Sbjct: 102062 tcagagaattcaaaatagatg 102082
>emb|BX248409.5| Human DNA sequence from clone RP11-360D2 on chromosome 1 Contains the 5' end of a novel gene (FLJ45235), a novel gene, the 5' end of the gene for Kelch motif containing protein, a ribosomal protein S27 (metallopanstimulin 1) (RPS27) pseudogene and a CpG island, complete sequence Length = 127227 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 345 actgttccattctccagtaca 365 ||||||||||||||||||||| Sbjct: 110494 actgttccattctccagtaca 110474
>emb|AL356789.16| Human DNA sequence from clone RP5-1076L12 on chromosome 1p32.1-33 Contains the 3' end of a variant of the gene for a novel protein, complete sequence Length = 99102 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 442 tcagagaattcaaaatagatg 462 ||||||||||||||||||||| Sbjct: 82830 tcagagaattcaaaatagatg 82850
>emb|AL162495.18| Human DNA sequence from clone RP11-233O7 on chromosome 13, complete sequence Length = 74428 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 443 cagagaattcaaaatagatgc 463 ||||||||||||||||||||| Sbjct: 54689 cagagaattcaaaatagatgc 54669
>emb|AL109921.21|HSDJ383J4 Human DNA sequence from clone RP3-383J4 on chromosome 1q24.1-24.3 Contains two genes for novel proteins (FLJ10514) and two CpG islands, complete sequence Length = 133936 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 345 actgttccattctccagtaca 365 ||||||||||||||||||||| Sbjct: 16971 actgttccattctccagtaca 16951
>emb|AL009183.10|HS892F13 Human DNA sequence from clone RP5-892F13 on chromosome 1p36.2-36.3 Contains the TNFRSF9 gene for tumor necrosis factor receptor superfamily member 9, complete sequence Length = 65848 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 348 gttccattctccagtacaatg 368 ||||||||||||||||||||| Sbjct: 44465 gttccattctccagtacaatg 44445
>emb|CR378672.1| Photobacterium profundum SS9; segment 10/12 Length = 348526 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 483 gcacttgtagcttcatcacataata 507 |||||||| |||||||||||||||| Sbjct: 235107 gcacttgttgcttcatcacataata 235083
>emb|BX572090.1| Prochlorococcus marinus MED4 complete genome; segment 1/5 Length = 349742 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 475 tatcgagtgcacttgtagcttcatc 499 ||||||||||||| ||||||||||| Sbjct: 69213 tatcgagtgcactagtagcttcatc 69237
>gb|AF270320.1|AF270320 Staphylococcus epidermidis strain SR1 clone step.4007g09 genomic sequence Length = 2019 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 483 gcacttgtagcttcatcacataata 507 |||||||| |||||||||||||||| Sbjct: 1764 gcacttgtcgcttcatcacataata 1788
>gb|AF270250.1|AF270250 Staphylococcus epidermidis strain SR1 clone step.1056e08 genomic sequence Length = 3044 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 483 gcacttgtagcttcatcacataata 507 |||||||| |||||||||||||||| Sbjct: 658 gcacttgtcgcttcatcacataata 682
>dbj|BS000009.1| Pan troglodytes chromosome 22 clone:PTB-118J15, map 22, complete sequences Length = 199914 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 442 tcagagaattcaaaatagatg 462 ||||||||||||||||||||| Sbjct: 107026 tcagagaattcaaaatagatg 107046
>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome Length = 2616530 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 483 gcacttgtagcttcatcacataata 507 |||||||| |||||||||||||||| Sbjct: 82306 gcacttgtcgcttcatcacataata 82282
>gb|AF130249.1|AF130249 Homo sapiens PAC 126N20 derived from chromosome 21p11.2, complete sequence, containing STCH and an unknown gene Length = 97083 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 442 tcagagaattcaaaatagatg 462 ||||||||||||||||||||| Sbjct: 80919 tcagagaattcaaaatagatg 80939
>gb|AC172623.3| Mus musculus chromosome 8, clone RP23-478A9, complete sequence Length = 182316 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 274 tctgctgtgaccacagttcag 294 ||||||||||||||||||||| Sbjct: 35880 tctgctgtgaccacagttcag 35900
>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome Length = 2499279 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 483 gcacttgtagcttcatcacataata 507 |||||||| |||||||||||||||| Sbjct: 2405555 gcacttgtcgcttcatcacataata 2405579
>gb|AC140338.3| Mus musculus BAC clone RP23-240M3 from 10, complete sequence Length = 232876 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 483 gcacttgtagcttcatcacat 503 ||||||||||||||||||||| Sbjct: 111636 gcacttgtagcttcatcacat 111616
>ref|NM_105729.3| Arabidopsis thaliana ATTAP1; ATPase, coupled to transmembrane movement of substances AT1G70610 (ATTAP1) mRNA, complete cds Length = 2347 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 476 atcgagtgcacttgtagcttcatc 499 ||||||||||||||| |||||||| Sbjct: 1997 atcgagtgcacttgtggcttcatc 1974
>ref|NM_104068.2| Arabidopsis thaliana kinase AT1G51880 mRNA, complete cds Length = 2643 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 431 ggataaagacatcagagaattcaa 454 |||||| ||||||||||||||||| Sbjct: 858 ggataatgacatcagagaattcaa 881
>ref|NM_119004.1| Arabidopsis thaliana ATM2; ATPase, coupled to transmembrane movement of substances AT4G28620 (ATM2) mRNA, complete cds Length = 2043 Score = 40.1 bits (20), Expect = 9.4 Identities = 47/56 (83%) Strand = Plus / Minus Query: 333 ccttgttccactactgttccattctccagtacaatgatctcatcgcattgcattgc 388 |||| |||||| ||| |||| ||||||| ||| | |||||||| ||||||||||| Sbjct: 1964 cctttttccaccacttttcctttctccattactaatatctcatcacattgcattgc 1909 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 477 tcgagtgcacttgtagcttcatcacataatag 508 |||||||||||||| ||||| ||||| ||||| Sbjct: 1820 tcgagtgcacttgttgcttcgtcacacaatag 1789
>ref|XM_629494.1| Dictyostelium discoideum ABC transporter B family protein (DDB0201625), partial mRNA Length = 2094 Score = 40.1 bits (20), Expect = 9.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 519 tccttcaagaatacacgagcaattgacactcgttgtttctcacc 562 ||||| |||| | ||||||||||||| |||| |||||| ||||| Sbjct: 1841 tcctttaagattgcacgagcaattgaaactctttgtttttcacc 1798
>gb|AC099007.2| Drosophila melanogaster clone BACR16B07, complete sequence Length = 172393 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 563 accacttaacttcaatccac 582 |||||||||||||||||||| Sbjct: 125180 accacttaacttcaatccac 125199
>gb|CP000114.1| Streptococcus agalactiae A909, complete genome Length = 2127839 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 653 agcatcataaacctcttcat 672 |||||||||||||||||||| Sbjct: 1581734 agcatcataaacctcttcat 1581753
>gb|AC148094.1| Mus musculus chromosome UNK clone RP24-497G1, complete sequence Length = 164650 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 ttgggtctatcaaacttcta 237 |||||||||||||||||||| Sbjct: 75584 ttgggtctatcaaacttcta 75603
>gb|AC005164.2| Homo sapiens BAC clone CTB-135C18 from 7, complete sequence Length = 123331 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 gcaaaggggaactgtattgg 221 |||||||||||||||||||| Sbjct: 108237 gcaaaggggaactgtattgg 108256
>gb|AC137832.40| Medicago truncatula clone mth2-22i17, complete sequence Length = 127688 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 476 atcgagtgcacttgtagcttcatc 499 ||||||||||||||| |||||||| Sbjct: 30464 atcgagtgcacttgttgcttcatc 30487
>gb|AC136840.24| Medicago truncatula clone mth2-33n3, complete sequence Length = 106528 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 agtgcacttgtagcttcatc 499 |||||||||||||||||||| Sbjct: 95653 agtgcacttgtagcttcatc 95634
>emb|AL513015.6| Human DNA sequence from clone RP1-52M20 on chromosome 6p22.1-22.3 Contains part of a novel gene (FLJ20342), complete sequence Length = 113228 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 ctctcccttaaatggaaaat 89 |||||||||||||||||||| Sbjct: 72182 ctctcccttaaatggaaaat 72201
>emb|AL445196.7| Human DNA sequence from clone RP11-31K13 on chromosome 6 Contains a heterogeneous nuclear ribonucleoprotein A1 (HNRPA1) pseudogene, the 5' end of the VMP gene for vesicular membrane protein p24 and one CpG island, complete sequence Length = 129171 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 catcacataatagaatggaa 515 |||||||||||||||||||| Sbjct: 24854 catcacataatagaatggaa 24873
>emb|AL359644.10| Human DNA sequence from clone RP11-162D16 on chromosome 9 Contains the 5' end of the STOM gene for stomatin (BND7, EPB7, EPB72), a novel gene, a lycoprotein galactosyltransferase alpha 1, 3 (GGTA1) pseudogene, a high-mobility group box 1 (HMG1, HMG3, SBP-1) (HMGB1) psueodgene and two CpG islands, complete sequence Length = 172600 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 442 tcagagaattcaaaatagatgctt 465 |||||||||||||||||| ||||| Sbjct: 70240 tcagagaattcaaaatagctgctt 70217
>emb|AL355300.9| Human DNA sequence from clone RP11-810B23 on chromosome 10 Contains a novel gene, complete sequence Length = 141456 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 cagagaattcaaaatagatg 462 |||||||||||||||||||| Sbjct: 91017 cagagaattcaaaatagatg 90998
>emb|AL034369.1|HSA149D17 Human DNA sequence from clone RP6-149D17 on chromosome Xq22.2-23 Contains the gene for a novel protein similar to pancreatic lipase-related protein 2 (PNLIPRP2), the 5' end of the COL4A6 gene for type IV alpha 6 collagen and the 5' end of the COL4A5 gene for type IV alpha 5 collagen (Alport syndrome), complete sequence Length = 122157 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 cagagaattcaaaatagatg 462 |||||||||||||||||||| Sbjct: 103284 cagagaattcaaaatagatg 103265
>gb|AE014263.1| Streptococcus agalactiae 2603V/R section 73 of 100 of the complete genome Length = 22261 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 653 agcatcataaacctcttcat 672 |||||||||||||||||||| Sbjct: 11383 agcatcataaacctcttcat 11402
>emb|AL766852.1|SAG766852 Streptococcus agalactiae NEM316 complete genome, segment 10 Length = 174050 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 653 agcatcataaacctcttcat 672 |||||||||||||||||||| Sbjct: 58765 agcatcataaacctcttcat 58784
>emb|AL161573.2|ATCHRIV69 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 69 Length = 197655 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 477 tcgagtgcacttgtagcttcatcacataatag 508 |||||||||||||| ||||| ||||| ||||| Sbjct: 56483 tcgagtgcacttgttgcttcgtcacacaatag 56514 Score = 40.1 bits (20), Expect = 9.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 333 ccttgttccactactgttccattctccagtacaatgatctcatcgcattgcattgc 388 |||| |||||| ||| |||| ||||||| ||| | |||||||| ||||||||||| Sbjct: 56339 cctttttccaccacttttcctttctccattactaatatctcatcacattgcattgc 56394
>emb|AJ289779.1|GGA289779 Gallus gallus angiopoietin-2C gene, exons 1-8 Length = 46022 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 cagaagcatcactggcttca 266 |||||||||||||||||||| Sbjct: 13494 cagaagcatcactggcttca 13513
>emb|AJ289778.1|GGA289778 Gallus gallus angiopoietin-2B gene, exons 1-9 Length = 46022 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 cagaagcatcactggcttca 266 |||||||||||||||||||| Sbjct: 13494 cagaagcatcactggcttca 13513
>emb|AJ289777.1|GGA289777 Gallus gallus angiopoietin-2 gene for angiopoietin-2A, exons 1-9 Length = 46022 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 cagaagcatcactggcttca 266 |||||||||||||||||||| Sbjct: 13494 cagaagcatcactggcttca 13513
>gb|AC024947.5| Homo sapiens chromosome 01 clone RP11-200I10, complete sequence Length = 163033 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 gcaaaggggaactgtattgg 221 |||||||||||||||||||| Sbjct: 114611 gcaaaggggaactgtattgg 114630
>gb|AC022390.9| Homo sapiens chromosome 10 clone RP11-131N11, complete sequence Length = 161223 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 623 aattgtatcatggatagaag 642 |||||||||||||||||||| Sbjct: 63555 aattgtatcatggatagaag 63574
>gb|AC022026.7| Homo sapiens chromosome 10 clone RP11-506B4, complete sequence Length = 170834 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 ttttcccttgcaaaggggaa 212 |||||||||||||||||||| Sbjct: 99363 ttttcccttgcaaaggggaa 99344
>gb|AC104940.2| Homo sapiens chromosome 8, clone RP11-378J9, complete sequence Length = 215962 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 cagagaattcaaaatagatg 462 |||||||||||||||||||| Sbjct: 194427 cagagaattcaaaatagatg 194446
>ref|NM_057374.2| Drosophila melanogaster shotgun CG3722-RA (shg), mRNA Length = 5414 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 563 accacttaacttcaatccac 582 |||||||||||||||||||| Sbjct: 4184 accacttaacttcaatccac 4203
>gb|AC025856.13| Homo sapiens chromosome 8, clone RP11-430K7, complete sequence Length = 167416 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 cagagaattcaaaatagatg 462 |||||||||||||||||||| Sbjct: 6853 cagagaattcaaaatagatg 6872
>gb|AY078409.1| Arabidopsis thaliana transporter associated with antigen processing-like protein (TAP1) mRNA, complete cds Length = 2103 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 476 atcgagtgcacttgtagcttcatc 499 ||||||||||||||| |||||||| Sbjct: 1872 atcgagtgcacttgtggcttcatc 1849
>gb|AC022709.7| Homo sapiens chromosome 8, clone RP11-88H1, complete sequence Length = 164290 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 cagagaattcaaaatagatg 462 |||||||||||||||||||| Sbjct: 132450 cagagaattcaaaatagatg 132431
>gb|AC068349.6| Homo sapiens chromosome 8, clone RP11-696J24, complete sequence Length = 186012 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 cagagaattcaaaatagatg 462 |||||||||||||||||||| Sbjct: 57636 cagagaattcaaaatagatg 57655
>gb|AF466308.1| Dictyostelium discoideum ABC transporter AbcB5 (abcB5) gene, complete cds Length = 4481 Score = 40.1 bits (20), Expect = 9.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 519 tccttcaagaatacacgagcaattgacactcgttgtttctcacc 562 ||||| |||| | ||||||||||||| |||| |||||| ||||| Sbjct: 2526 tcctttaagattgcacgagcaattgaaactctttgtttttcacc 2483
>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome Length = 1010023 Score = 40.1 bits (20), Expect = 9.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 536 agcaattgacactcgttgtttctcaccaccacttaa 571 |||||||| ||||| |||||| | |||||||||||| Sbjct: 798190 agcaattgccactctttgtttttgaccaccacttaa 798225
>gb|AC026414.6| Homo sapiens chromosome 5 clone CTD-2036A18, complete sequence Length = 148065 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 cagagaattcaaaatagatg 462 |||||||||||||||||||| Sbjct: 111689 cagagaattcaaaatagatg 111708
>gb|AC010275.6| Homo sapiens chromosome 5 clone CTC-499J9, complete sequence Length = 197255 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 cagagaattcaaaatagatg 462 |||||||||||||||||||| Sbjct: 182197 cagagaattcaaaatagatg 182216
>gb|U52079.1|STU52079 Solanum tuberosum P-glycoprotein (pmdr1) mRNA, complete cds Length = 4160 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 476 atcgagtgcacttgtagcttcatc 499 ||||||||||||||| |||||||| Sbjct: 3689 atcgagtgcacttgttgcttcatc 3666
>gb|AC090842.3| Homo sapiens chromosome 3 clone RP11-155E14 map 3p, complete sequence Length = 154922 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 caaggctaaggagaaacctg 167 |||||||||||||||||||| Sbjct: 81861 caaggctaaggagaaacctg 81842
>gb|AC023245.5|AC023245 Homo sapiens chromosome 8, clone RP11-25D10, complete sequence Length = 175205 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 cagagaattcaaaatagatg 462 |||||||||||||||||||| Sbjct: 154244 cagagaattcaaaatagatg 154263
>gb|AC015522.6|AC015522 Homo sapiens chromosome 8, clone RP11-327O12, complete sequence Length = 147026 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 cagagaattcaaaatagatg 462 |||||||||||||||||||| Sbjct: 33544 cagagaattcaaaatagatg 33525
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 480 agtgcacttgtagcttcatc 499 |||||||||||||||||||| Sbjct: 4969382 agtgcacttgtagcttcatc 4969401
>gb|AC010796.7|AC010796 Arabidopsis thaliana chromosome 1 BAC F24J13 genomic sequence, complete sequence Length = 87400 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 476 atcgagtgcacttgtagcttcatc 499 ||||||||||||||| |||||||| Sbjct: 75785 atcgagtgcacttgtggcttcatc 75762
>gb|AC011663.7|AC011663 Arabidopsis thaliana chromosome 1 BAC F5A18 genomic sequence, complete sequence Length = 108582 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 476 atcgagtgcacttgtagcttcatc 499 ||||||||||||||| |||||||| Sbjct: 78717 atcgagtgcacttgtggcttcatc 78740
>ref|XM_345327.1| PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp434E1818.1 - human (fragment) (LOC366005), mRNA Length = 750 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 gctgtgaccacagttcagca 296 |||||||||||||||||||| Sbjct: 291 gctgtgaccacagttcagca 272
>gb|AF287698.1|AF287698 Arabidopsis thaliana half-molecule ABC transporter ATM2 mRNA, complete cds Length = 2043 Score = 40.1 bits (20), Expect = 9.4 Identities = 47/56 (83%) Strand = Plus / Minus Query: 333 ccttgttccactactgttccattctccagtacaatgatctcatcgcattgcattgc 388 |||| |||||| ||| |||| ||||||| ||| | |||||||| ||||||||||| Sbjct: 1964 cctttttccaccacttttcctttctccattactaatatctcatcacattgcattgc 1909 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 477 tcgagtgcacttgtagcttcatcacataatag 508 |||||||||||||| ||||| ||||| ||||| Sbjct: 1820 tcgagtgcacttgttgcttcgtcacacaatag 1789
>gb|AC022816.15|AC022816 Homo sapiens chromosome 17, clone RP11-626C5, complete sequence Length = 95546 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 442 tcagagaattcaaaatagatgctt 465 |||||||||||||||||| ||||| Sbjct: 50596 tcagagaattcaaaatagctgctt 50573
>gb|AC015448.4|AC015448 Arabidopsis thaliana chromosome I BAC T14L22 genomic sequence, complete sequence Length = 95581 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 431 ggataaagacatcagagaattcaa 454 |||||| ||||||||||||||||| Sbjct: 50467 ggataatgacatcagagaattcaa 50444
>gb|AC141633.4| Mus musculus BAC clone RP24-155I4 from chromosome 18, complete sequence Length = 163886 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 ttgggtctatcaaacttcta 237 |||||||||||||||||||| Sbjct: 74717 ttgggtctatcaaacttcta 74698
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome Length = 3630528 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 476 atcgagtgcacttgtagcttcatcacataata 507 ||||||||||||||| ||||| |||| ||||| Sbjct: 3463785 atcgagtgcacttgttgcttcgtcacttaata 3463816
>dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0031B09 Length = 132729 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 480 agtgcacttgtagcttcatc 499 |||||||||||||||||||| Sbjct: 40508 agtgcacttgtagcttcatc 40527
>gb|AC011422.2|AC011422 Homo sapiens chromosome 5 clone CTD-2335E17, complete sequence Length = 119668 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 cagagaattcaaaatagatg 462 |||||||||||||||||||| Sbjct: 97853 cagagaattcaaaatagatg 97834
>emb|Z33018.1|MC017 M.capricolum DNA for CONTIG MC017 Length = 1201 Score = 40.1 bits (20), Expect = 9.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 536 agcaattgacactcgttgtttctcaccaccacttaa 571 |||||||| ||||| |||||| | |||||||||||| Sbjct: 619 agcaattgccactctttgtttttgaccaccacttaa 584
>emb|CR751567.7| Zebrafish DNA sequence from clone DKEY-47I3 in linkage group 20, complete sequence Length = 56010 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 122 gtatgaaatgttaagcaccacatt 145 ||||||||||||||||| |||||| Sbjct: 9097 gtatgaaatgttaagcagcacatt 9074
>gb|AE003452.5| Drosophila melanogaster chromosome 2R, section 60 of 73 of the complete sequence Length = 303438 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 563 accacttaacttcaatccac 582 |||||||||||||||||||| Sbjct: 266959 accacttaacttcaatccac 266940
>gb|AC005268.1|AC005268 Drosophila melanogaster DNA sequence (P1s DS03550 (D225) and DS02397 (D206)), complete sequence Length = 89791 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 563 accacttaacttcaatccac 582 |||||||||||||||||||| Sbjct: 12769 accacttaacttcaatccac 12788
>emb|AL606927.12| Mouse DNA sequence from clone RP23-144I6 on chromosome 4, complete sequence Length = 212373 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 665 ctcttcatcagttgctgata 684 |||||||||||||||||||| Sbjct: 142328 ctcttcatcagttgctgata 142347
>dbj|AP004281.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1157A1 Length = 138830 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 cagagaattcaaaatagatg 462 |||||||||||||||||||| Sbjct: 105783 cagagaattcaaaatagatg 105764 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,758,876 Number of Sequences: 3902068 Number of extensions: 5758876 Number of successful extensions: 131104 Number of sequences better than 10.0: 89 Number of HSP's better than 10.0 without gapping: 89 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 130734 Number of HSP's gapped (non-prelim): 364 length of query: 688 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 665 effective length of database: 17,143,297,704 effective search space: 11400292973160 effective search space used: 11400292973160 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)