>HXD3_CHICK (O93353) Homeobox protein Hox-D3|
          Length = 413

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = +2

Query: 485 LPSSPMKSRSLPSPQMQPRYLPSPIQCLFLHSFQMQPLFPQSCQMQSLQSSNPSHLVETR 664
           LPS P++   L  PQ  P+  P+P         Q QP  P S       SSNP+    T+
Sbjct: 74  LPSQPLQPPGLTDPQAPPQPPPAP---------QAQPPPPSSASPSQNASSNPAPANSTK 124

>HXA3_CHICK (Q7T3J5) Homeobox protein Hox-A3|
          Length = 413

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = +2

Query: 485 LPSSPMKSRSLPSPQMQPRYLPSPIQCLFLHSFQMQPLFPQSCQMQSLQSSNPSHLVETR 664
           LPS P++   L  PQ  P+  P+P         Q QP  P S       SSNP+    T+
Sbjct: 74  LPSQPLQPPGLTDPQAPPQPPPAP---------QAQPPPPSSASPSQNASSNPAPANSTK 124

>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding|
           protein MBD6)
          Length = 1003

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +2

Query: 488 PSSPMKSRS-LPSPQMQPRYLPSPIQCLFLHSFQMQPLFPQSCQMQSLQSSNPSH 649
           P +P +SR   P+P  QP  LP P           QP+ P    +  L +  PSH
Sbjct: 381 PQTPRRSRPRAPAPVPQPFSLPEP----------SQPILPSVLSLLGLPTPGPSH 425


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,015,169
Number of Sequences: 219361
Number of extensions: 1392054
Number of successful extensions: 3655
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3626
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6825954960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)