ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6m04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467831.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.010
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.010
3dbj|AP004774.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.010
4dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.010
5dbj|AK066184.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.010
6dbj|AK062267.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.010
7emb|BX571886.9| Zebrafish DNA sequence from clone DKEY-257C10 in... 46 0.15
8emb|AL389887.7| Human DNA sequence from clone RP11-54F22 on chro... 42 2.4
9gb|AC096677.2| Homo sapiens chromosome 1 clone RP11-134G8, compl... 42 2.4
10gb|AC090999.1| Caenorhabditis elegans cosmid Y82E9BR, complete s... 42 2.4
11gb|AC021101.8| Homo sapiens BAC clone RP11-114P18 from 4, comple... 42 2.4
12gb|AC119427.3| Homo sapiens chromosome 1 clone RP11-27G14, compl... 42 2.4
13gb|AY104474.1| Zea mays PCO112790 mRNA sequence 42 2.4
14gb|L21906.1|HUMTROPI02 Human troponin I, slow-twitch isoform (TN... 42 2.4
15gb|BT018691.1| Zea mays clone EL01N0512C10.d mRNA sequence 40 9.4
16gb|AY724782.1| Rattus norvegicus GON4L isoform B (Gon4l) mRNA, c... 40 9.4
17gb|AY724781.1| Rattus norvegicus GON4L isoform A (Gon4l) mRNA, c... 40 9.4
18ref|XM_500377.1| Yarrowia lipolytica CLIB122, YALI0B01210g predi... 40 9.4
19gb|AY152836.1| Felis catus clone BAC 160a17 major histocompatibl... 40 9.4
20ref|NM_001024804.1| Rattus norvegicus Dingo protein (LOC499653),... 40 9.4
21ref|NM_001024797.1| Rattus norvegicus Dingo protein (LOC499653),... 40 9.4
22emb|X99517.1|ZMEIF5 Z.mays mRNA for eukaryotic initiation factor-5 40 9.4
23emb|Y00221.1|DMDGHTRL Drosophila mRNA for the sex determining ge... 40 9.4
24dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 40 9.4
25ref|NM_057841.3| Drosophila melanogaster daughterless CG5102-RA ... 40 9.4
26gb|AC097526.3| Homo sapiens BAC clone RP11-627H22 from 4, comple... 40 9.4
27emb|CR386725.1| Gallus gallus finished cDNA, clone ChEST225o3 40 9.4
28gb|AC092237.1|AC092237 Drosophila melanogaster, chromosome 2L, r... 40 9.4
29gb|M93661.1|RATNOTCHX Rattus norvegicus NOTCH2 mRNA, complete cds 40 9.4
30gb|AC107208.6| Homo sapiens BAC clone RP13-487K5 from 4, complet... 40 9.4
31gb|BT003251.1| Drosophila melanogaster LD29371 full insert cDNA 40 9.4
32gb|AC151826.8| Monodelphis domestica, clone XX-25F7, complete se... 40 9.4
33emb|AJ132240.1|ZMA132240 Zea mays eIF-5 gene, exons 1-2 40 9.4
34gb|AC007451.1|AC007451 Drosophila melanogaster, chromosome 2L, r... 40 9.4
35gb|AE003628.2| Drosophila melanogaster chromosome 2L, section 37... 40 9.4
36emb|AL049778.3|CNS00004 Human chromosome 14 DNA sequence BAC R-6... 40 9.4
37gb|AC149051.4| Mus musculus BAC clone RP24-325F10 from 8, comple... 40 9.4
38emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB1... 40 9.4
39ref|NM_024358.1| Rattus norvegicus notch gene homolog 2 (Drosoph... 40 9.4
40emb|AL356802.5|CNS05TDK Human chromosome 14 DNA sequence BAC C-2... 40 9.4
41gb|AC171070.2| Rhesus Macaque CHR5 BAC CH250-450H6 (Children's H... 40 9.4
42gb|J03148.1|DRODANS D.melanogaster daughterless protein (da) mRN... 40 9.4 
>ref|XM_467831.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1548

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 613  tcagatgcagtctcttcagtcttcaaacc 641
            |||||||||||||||||| ||||||||||
Sbjct: 1048 tcagatgcagtctcttcactcttcaaacc 1020



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 560  cagtgtctgtttctccactcttttcagatgcagcctct 597
            |||| ||||||||| | |||||||||||||||| ||||
Sbjct: 1071 cagtatctgtttcttccctcttttcagatgcagtctct 1034
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 613      tcagatgcagtctcttcagtcttcaaacc 641
                |||||||||||||||||| ||||||||||
Sbjct: 31623650 tcagatgcagtctcttcactcttcaaacc 31623678



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                      
Query: 560      cagtgtctgtttctccactcttttcagatgcagcctct 597
                |||| ||||||||| | |||||||||||||||| ||||
Sbjct: 31623627 cagtatctgtttcttccctcttttcagatgcagtctct 31623664
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>dbj|AP004774.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0431B06
          Length = 154796

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                           
Query: 613    tcagatgcagtctcttcagtcttcaaacc 641
              |||||||||||||||||| ||||||||||
Sbjct: 114210 tcagatgcagtctcttcactcttcaaacc 114238



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                    
Query: 560    cagtgtctgtttctccactcttttcagatgcagcctct 597
              |||| ||||||||| | |||||||||||||||| ||||
Sbjct: 114187 cagtatctgtttcttccctcttttcagatgcagtctct 114224
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>dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1288_G09
          Length = 109672

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                         
Query: 613  tcagatgcagtctcttcagtcttcaaacc 641
            |||||||||||||||||| ||||||||||
Sbjct: 3437 tcagatgcagtctcttcactcttcaaacc 3465



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 560  cagtgtctgtttctccactcttttcagatgcagcctct 597
            |||| ||||||||| | |||||||||||||||| ||||
Sbjct: 3414 cagtatctgtttcttccctcttttcagatgcagtctct 3451
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>dbj|AK066184.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013056M21, full
            insert sequence
          Length = 1548

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 613  tcagatgcagtctcttcagtcttcaaacc 641
            |||||||||||||||||| ||||||||||
Sbjct: 1048 tcagatgcagtctcttcactcttcaaacc 1020



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 560  cagtgtctgtttctccactcttttcagatgcagcctct 597
            |||| ||||||||| | |||||||||||||||| ||||
Sbjct: 1071 cagtatctgtttcttccctcttttcagatgcagtctct 1034
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>dbj|AK062267.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-A02, full
            insert sequence
          Length = 1165

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 613  tcagatgcagtctcttcagtcttcaaacc 641
            |||||||||||||||||| ||||||||||
Sbjct: 1044 tcagatgcagtctcttcactcttcaaacc 1016



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 560  cagtgtctgtttctccactcttttcagatgcagcctct 597
            |||| ||||||||| | |||||||||||||||| ||||
Sbjct: 1067 cagtatctgtttcttccctcttttcagatgcagtctct 1030
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>emb|BX571886.9| Zebrafish DNA sequence from clone DKEY-257C10 in linkage group 15,
             complete sequence
          Length = 178049

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 582   ttcagatgcagcctctgtttccc 604
             |||||||||||||||||||||||
Sbjct: 69862 ttcagatgcagcctctgtttccc 69840
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>emb|AL389887.7| Human DNA sequence from clone RP11-54F22 on chromosome Xq21.1-21.31
             Contains the 5' end of the RPS6KA6 gene for ribosomal
             protein S6 kinase (90kD) polypeptide 6 and a CpG island,
             complete sequence
          Length = 143220

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 441   aacagtatcagtttcttccttcttt 465
             ||||||||||| |||||||||||||
Sbjct: 94159 aacagtatcagattcttccttcttt 94183
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>gb|AC096677.2| Homo sapiens chromosome 1 clone RP11-134G8, complete sequence
          Length = 223735

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 513   ctcttccctctcctcagatgc 533
             |||||||||||||||||||||
Sbjct: 15023 ctcttccctctcctcagatgc 15043
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>gb|AC090999.1| Caenorhabditis elegans cosmid Y82E9BR, complete sequence
          Length = 139291

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 198   ttaaaagggttgttatcactt 218
             |||||||||||||||||||||
Sbjct: 36919 ttaaaagggttgttatcactt 36899
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>gb|AC021101.8| Homo sapiens BAC clone RP11-114P18 from 4, complete sequence
          Length = 47069

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 224   gttcatctgttggtgggaatt 244
             |||||||||||||||||||||
Sbjct: 19057 gttcatctgttggtgggaatt 19077
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>gb|AC119427.3| Homo sapiens chromosome 1 clone RP11-27G14, complete sequence
          Length = 181148

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 513    ctcttccctctcctcagatgc 533
              |||||||||||||||||||||
Sbjct: 170032 ctcttccctctcctcagatgc 170052
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>gb|AY104474.1| Zea mays PCO112790 mRNA sequence
          Length = 2008

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 259 ctcatatcaacatctgagacg 279
           |||||||||||||||||||||
Sbjct: 801 ctcatatcaacatctgagacg 781
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>gb|L21906.1|HUMTROPI02 Human troponin I, slow-twitch isoform (TNNI1) gene, exons 2-4
          Length = 2607

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 513 ctcttccctctcctcagatgc 533
           |||||||||||||||||||||
Sbjct: 788 ctcttccctctcctcagatgc 768
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>gb|BT018691.1| Zea mays clone EL01N0512C10.d mRNA sequence
          Length = 1992

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 259 ctcatatcaacatctgagac 278
           ||||||||||||||||||||
Sbjct: 794 ctcatatcaacatctgagac 775
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>gb|AY724782.1| Rattus norvegicus GON4L isoform B (Gon4l) mRNA, complete cds,
            alternatively spliced
          Length = 7820

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 547  tccttctccgatccagtgtctgtt 570
            |||||||||| |||||||||||||
Sbjct: 4686 tccttctccgctccagtgtctgtt 4663
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>gb|AY724781.1| Rattus norvegicus GON4L isoform A (Gon4l) mRNA, complete cds,
            alternatively spliced
          Length = 7740

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 547  tccttctccgatccagtgtctgtt 570
            |||||||||| |||||||||||||
Sbjct: 4686 tccttctccgctccagtgtctgtt 4663
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>ref|XM_500377.1| Yarrowia lipolytica CLIB122, YALI0B01210g predicted mRNA
          Length = 1380

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 581  tttcagatgcagcctctgtttccccaat 608
            ||||||||||| |||||||| |||||||
Sbjct: 992  tttcagatgcaccctctgttcccccaat 1019
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>gb|AY152836.1| Felis catus clone BAC 160a17 major histocompatiblity complex classical
              class II region, partial sequence
          Length = 130898

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    ttcatctgttggtgggaatt 244
              ||||||||||||||||||||
Sbjct: 104484 ttcatctgttggtgggaatt 104465
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>ref|NM_001024804.1| Rattus norvegicus Dingo protein (LOC499653), transcript variant 2,
            mRNA
          Length = 7820

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 547  tccttctccgatccagtgtctgtt 570
            |||||||||| |||||||||||||
Sbjct: 4686 tccttctccgctccagtgtctgtt 4663
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>ref|NM_001024797.1| Rattus norvegicus Dingo protein (LOC499653), transcript variant 1,
            mRNA
          Length = 7740

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 547  tccttctccgatccagtgtctgtt 570
            |||||||||| |||||||||||||
Sbjct: 4686 tccttctccgctccagtgtctgtt 4663
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>emb|X99517.1|ZMEIF5 Z.mays mRNA for eukaryotic initiation factor-5
          Length = 1975

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 259 ctcatatcaacatctgagac 278
           ||||||||||||||||||||
Sbjct: 749 ctcatatcaacatctgagac 730
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>emb|Y00221.1|DMDGHTRL Drosophila mRNA for the sex determining gene daughterless
          Length = 2954

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 187  tttgttgtgtgttaaaagggttgt 210
            |||||||||||||||||| |||||
Sbjct: 2565 tttgttgtgtgttaaaagtgttgt 2542
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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 300     tcacgggtcagatgaactgc 319
               ||||||||||||||||||||
Sbjct: 2021017 tcacgggtcagatgaactgc 2021036
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>ref|NM_057841.3| Drosophila melanogaster daughterless CG5102-RA (da), mRNA
          Length = 3188

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 187  tttgttgtgtgttaaaagggttgt 210
            |||||||||||||||||| |||||
Sbjct: 2802 tttgttgtgtgttaaaagtgttgt 2779
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>gb|AC097526.3| Homo sapiens BAC clone RP11-627H22 from 4, complete sequence
          Length = 144324

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 299    ttcacgggtcagatgaactg 318
              ||||||||||||||||||||
Sbjct: 133393 ttcacgggtcagatgaactg 133412
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>emb|CR386725.1| Gallus gallus finished cDNA, clone ChEST225o3
          Length = 717

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 512 tctcttccctctcctcagat 531
           ||||||||||||||||||||
Sbjct: 249 tctcttccctctcctcagat 268
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>gb|AC092237.1|AC092237 Drosophila melanogaster, chromosome 2L, region 31C-31D, BAC clone
            BACR30M19, complete sequence
          Length = 154779

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 187  tttgttgtgtgttaaaagggttgt 210
            |||||||||||||||||| |||||
Sbjct: 8884 tttgttgtgtgttaaaagtgttgt 8907
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>gb|M93661.1|RATNOTCHX Rattus norvegicus NOTCH2 mRNA, complete cds
          Length = 8287

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 547 tccttctccgatccagtgtctgtt 570
           |||||||||| |||||||||||||
Sbjct: 142 tccttctccgctccagtgtctgtt 165
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>gb|AC107208.6| Homo sapiens BAC clone RP13-487K5 from 4, complete sequence
          Length = 81763

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 299   ttcacgggtcagatgaactg 318
             ||||||||||||||||||||
Sbjct: 67332 ttcacgggtcagatgaactg 67351
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>gb|BT003251.1| Drosophila melanogaster LD29371 full insert cDNA
          Length = 3156

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 187  tttgttgtgtgttaaaagggttgt 210
            |||||||||||||||||| |||||
Sbjct: 2778 tttgttgtgtgttaaaagtgttgt 2755
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>gb|AC151826.8| Monodelphis domestica, clone XX-25F7, complete sequence
          Length = 152619

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    ttggtgggaattcactgtgg 252
              ||||||||||||||||||||
Sbjct: 104490 ttggtgggaattcactgtgg 104471
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>emb|AJ132240.1|ZMA132240 Zea mays eIF-5 gene, exons 1-2
          Length = 6831

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 259  ctcatatcaacatctgagac 278
            ||||||||||||||||||||
Sbjct: 3948 ctcatatcaacatctgagac 3929
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>gb|AC007451.1|AC007451 Drosophila melanogaster, chromosome 2L, region 31D1-31F4, BAC clones
             DS00953 and BACR48K04, complete sequence
          Length = 161754

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 187   tttgttgtgtgttaaaagggttgt 210
             |||||||||||||||||| |||||
Sbjct: 52247 tttgttgtgtgttaaaagtgttgt 52224
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>gb|AE003628.2| Drosophila melanogaster chromosome 2L, section 37 of 83 of the complete
              sequence
          Length = 269102

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 187    tttgttgtgtgttaaaagggttgt 210
              |||||||||||||||||| |||||
Sbjct: 154515 tttgttgtgtgttaaaagtgttgt 154492
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>emb|AL049778.3|CNS00004 Human chromosome 14 DNA sequence BAC R-643C12 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 205581

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 272  ctgagacgtacttttcatcc 291
            ||||||||||||||||||||
Sbjct: 6663 ctgagacgtacttttcatcc 6682
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>gb|AC149051.4| Mus musculus BAC clone RP24-325F10 from 8, complete sequence
          Length = 184939

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    ttttaatgttcatctgttgg 236
              ||||||||||||||||||||
Sbjct: 132310 ttttaatgttcatctgttgg 132291
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>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica
          Length = 3066374

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 581    tttcagatgcagcctctgtttccccaat 608
              ||||||||||| |||||||| |||||||
Sbjct: 202214 tttcagatgcaccctctgttcccccaat 202241
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>ref|NM_024358.1| Rattus norvegicus notch gene homolog 2 (Drosophila) (Notch2), mRNA
          Length = 8287

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 547 tccttctccgatccagtgtctgtt 570
           |||||||||| |||||||||||||
Sbjct: 142 tccttctccgctccagtgtctgtt 165
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>emb|AL356802.5|CNS05TDK Human chromosome 14 DNA sequence BAC C-2137E9 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 137883

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 272    ctgagacgtacttttcatcc 291
              ||||||||||||||||||||
Sbjct: 118786 ctgagacgtacttttcatcc 118805
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>gb|AC171070.2| Rhesus Macaque CHR5 BAC CH250-450H6 (Children's Hospital Oakland
             Research Institute Rhesus macaque Adult Male BAC Library)
             complete sequence
          Length = 171429

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 162   acaaaataagtcaggcagcttccc 185
             ||||||||||||| ||||||||||
Sbjct: 13686 acaaaataagtcaagcagcttccc 13663
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>gb|J03148.1|DRODANS D.melanogaster daughterless protein (da) mRNA, complete cds
          Length = 2813

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 187  tttgttgtgtgttaaaagggttgt 210
            |||||||||||||||||| |||||
Sbjct: 2488 tttgttgtgtgttaaaagtgttgt 2465


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,557,754
Number of Sequences: 3902068
Number of extensions: 5557754
Number of successful extensions: 122376
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122219
Number of HSP's gapped (non-prelim): 157
length of query: 688
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 665
effective length of database: 17,143,297,704
effective search space: 11400292973160
effective search space used: 11400292973160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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