>HNF1B_PIG (Q03365) Hepatocyte nuclear factor 1-beta (HNF-1beta) (HNF-1B)|
           (Variant hepatic nuclear factor 1) (VHNF1) (FPC-binding
           protein) (FPCB)
          Length = 559

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 81  LLHPANKLQMSIYSLHISGGGIHLQSSNKVTHHLNHHYPEE 203
           LL P  K+Q+S+     SGGG+   S+    H L+HH P++
Sbjct: 396 LLSPDGKMQISV-----SGGGLPPVSTLTNIHSLSHHNPQQ 431

>HNF1B_MOUSE (P27889) Hepatocyte nuclear factor 1-beta (HNF-1beta) (HNF-1B)|
           (Variant hepatic nuclear factor 1) (VHNF1) (Homeoprotein
           LFB3)
          Length = 558

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +3

Query: 78  ALLHPANKLQMSIYSLHISGGGIHLQSSNKVTHHLNHHYPEE 203
           +LL P +K+Q+++     SGGG+   S+    H L+HH P++
Sbjct: 394 SLLSPDSKMQITV-----SGGGLPPVSTLTNIHSLSHHNPQQ 430

>COX1_RHILE (Q08855) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I) (Cytochrome aa3 subunit 1)
          Length = 538

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 87  HPANKLQMSIYSLHISGGGIHLQSSNKVTHHLNHHYP 197
           HP   + ++I+SLHI+G    L + N +T  LN   P
Sbjct: 163 HPGPAVDLAIFSLHIAGASSILGAINFITTILNMRAP 199


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,719,496
Number of Sequences: 219361
Number of extensions: 1992179
Number of successful extensions: 4423
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4420
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6257125380
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)