>gb|AY109091.1| Zea mays PCO149758 mRNA sequence
          Length = 1014

 Score =  121 bits (61), Expect = 3e-24
 Identities = 127/149 (85%)
 Strand = Plus / Minus

                                                                       
Query: 508 atcaagaacgcccaaattgggacaatactgattgaaacaaagtagaaaatgcgtcagcag 567
           |||||||| ||||||||| ||||||  |||| ||||||||| | || ||||| |||||||
Sbjct: 752 atcaagaaagcccaaatttggacaaggctgactgaaacaaactcgagaatgcctcagcag 693

                                                                       
Query: 568 tagtcccatcctcgaccttaattttgagctgggccttcgctgatgctgtgttcacaatgc 627
            ||| ||||| ||  |||| ||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 692 cagttccatcatcagccttgattttgagctgtgccttcgctgatgctgtgttgacaatac 633

                                        
Query: 628 attctacaaggtagacggcagcagcccca 656
           |||| |||||| |||  ||||||||||||
Sbjct: 632 attcaacaaggaagaaagcagcagcccca 604

>dbj|AK061897.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-G12, full
           insert sequence
          Length = 599

 Score =  101 bits (51), Expect = 3e-18
 Identities = 120/143 (83%)
 Strand = Plus / Minus

                                                                       
Query: 496 aaaatgctcacaatcaagaacgcccaaattgggacaatactgattgaaacaaagtagaaa 555
           ||||||||||  |||||||| ||||||||| ||||||  |||| |||||||| || ||||
Sbjct: 176 aaaatgctcaggatcaagaaagcccaaatttggacaaagctgactgaaacaacgttgaaa 117

                                                                       
Query: 556 atgcgtcagcagtagtcccatcctcgaccttaattttgagctgggccttcgctgatgctg 615
           |||| || ||||  |||||||| ||  |||| | ||||| ||| ||||||||||||||||
Sbjct: 116 atgcctctgcagcggtcccatcatcagccttcactttgatctgtgccttcgctgatgctg 57

                                  
Query: 616 tgttcacaatgcattctacaagg 638
           |||| || || ||||||||||||
Sbjct: 56  tgttgacgatacattctacaagg 34

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  101 bits (51), Expect = 3e-18
 Identities = 120/143 (83%)
 Strand = Plus / Minus

                                                                            
Query: 496      aaaatgctcacaatcaagaacgcccaaattgggacaatactgattgaaacaaagtagaaa 555
                ||||||||||  |||||||| ||||||||| ||||||  |||| |||||||| || ||||
Sbjct: 24998979 aaaatgctcaggatcaagaaagcccaaatttggacaaagctgactgaaacaacgttgaaa 24998920

                                                                            
Query: 556      atgcgtcagcagtagtcccatcctcgaccttaattttgagctgggccttcgctgatgctg 615
                |||| || ||||  |||||||| ||  |||| | ||||| ||| ||||||||||||||||
Sbjct: 24998919 atgcctctgcagcggtcccatcatcagccttcactttgatctgtgccttcgctgatgctg 24998860

                                       
Query: 616      tgttcacaatgcattctacaagg 638
                |||| || || ||||||||||||
Sbjct: 24998859 tgttgacgatacattctacaagg 24998837

>dbj|AP002744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0006C01
          Length = 153865

 Score =  101 bits (51), Expect = 3e-18
 Identities = 120/143 (83%)
 Strand = Plus / Minus

                                                                         
Query: 496   aaaatgctcacaatcaagaacgcccaaattgggacaatactgattgaaacaaagtagaaa 555
             ||||||||||  |||||||| ||||||||| ||||||  |||| |||||||| || ||||
Sbjct: 71502 aaaatgctcaggatcaagaaagcccaaatttggacaaagctgactgaaacaacgttgaaa 71443

                                                                         
Query: 556   atgcgtcagcagtagtcccatcctcgaccttaattttgagctgggccttcgctgatgctg 615
             |||| || ||||  |||||||| ||  |||| | ||||| ||| ||||||||||||||||
Sbjct: 71442 atgcctctgcagcggtcccatcatcagccttcactttgatctgtgccttcgctgatgctg 71383

                                    
Query: 616   tgttcacaatgcattctacaagg 638
             |||| || || ||||||||||||
Sbjct: 71382 tgttgacgatacattctacaagg 71360

>ref|NM_192888.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2541

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 109/130 (83%)
 Strand = Plus / Minus

                                                                        
Query: 509  tcaagaacgcccaaattgggacaatactgattgaaacaaagtagaaaatgcgtcagcagt 568
            ||||||| ||||||||| ||||||  |||| |||||||| || |||||||| || |||| 
Sbjct: 2541 tcaagaaagcccaaatttggacaaagctgactgaaacaacgttgaaaatgcctctgcagc 2482

                                                                        
Query: 569  agtcccatcctcgaccttaattttgagctgggccttcgctgatgctgtgttcacaatgca 628
             |||||||| ||  |||| | ||||| ||| |||||||||||||||||||| || || ||
Sbjct: 2481 ggtcccatcatcagccttcactttgatctgtgccttcgctgatgctgtgttgacgataca 2422

                      
Query: 629  ttctacaagg 638
            ||||||||||
Sbjct: 2421 ttctacaagg 2412

>gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0009F15,
              complete sequence
          Length = 142289

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 369    tttcacctgctccaagcttct 389
              |||||||||||||||||||||
Sbjct: 130210 tttcacctgctccaagcttct 130190

>gb|AC138006.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0066O12, complete sequence
          Length = 22258

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 369   tttcacctgctccaagcttct 389
             |||||||||||||||||||||
Sbjct: 21608 tttcacctgctccaagcttct 21628

>gb|AC160248.6| Pan troglodytes BAC clone CH251-541A22 from chromosome unknown,
            complete sequence
          Length = 182426

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 38   taactttgaattccaacttat 58
            |||||||||||||||||||||
Sbjct: 1460 taactttgaattccaacttat 1480

>emb|AL354674.5| Human DNA sequence from clone RP11-629E24 on chromosome 13 Contains  a
              novel gene and a CpG island, complete sequence
          Length = 137347

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 38     taactttgaattccaacttat 58
              |||||||||||||||||||||
Sbjct: 109551 taactttgaattccaacttat 109571

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 369     tttcacctgctccaagcttct 389
               |||||||||||||||||||||
Sbjct: 4478847 tttcacctgctccaagcttct 4478827

>gb|AC159029.1| Pan troglodytes BAC clone CH251-407C14 from chromosome unknown, complete
              sequence
          Length = 175795

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 38     taactttgaattccaacttat 58
              |||||||||||||||||||||
Sbjct: 125523 taactttgaattccaacttat 125543

>gb|AF494366.1| Helicobacter bilis antigen P17Hb64 gene, complete cds
          Length = 444

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 18 gttcttaagaagttgatgttt 38
          |||||||||||||||||||||
Sbjct: 7  gttcttaagaagttgatgttt 27

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 369     tttcacctgctccaagcttct 389
               |||||||||||||||||||||
Sbjct: 4487541 tttcacctgctccaagcttct 4487521

>gb|BC116614.1| Danio rerio opsin 4 (melanopsin), mRNA (cDNA clone MGC:136728
            IMAGE:7043557), complete cds
          Length = 3218

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 405  gggaaggctttgcttggagg 424
            ||||||||||||||||||||
Sbjct: 1594 gggaaggctttgcttggagg 1613

>emb|Z73102.1|CEB0035 Caenorhabditis elegans Cosmid B0035, complete sequence
          Length = 39483

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 220   gatgactgaatgaaattgtatagt 243
             ||||||||||||||||||| ||||
Sbjct: 22593 gatgactgaatgaaattgtgtagt 22570

>emb|AL590484.10| Human DNA sequence from clone RP11-76E18 on chromosome 6 Contains the
             5' end of a gene for a novel protein, complete sequence
          Length = 65240

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    gtacatgttcttaagaagtt 31
             ||||||||||||||||||||
Sbjct: 23353 gtacatgttcttaagaagtt 23334

>emb|AL162573.15| Human DNA sequence from clone RP11-275J18 on chromosome 13, complete
             sequence
          Length = 166509

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    gtacatgttcttaagaagtt 31
             ||||||||||||||||||||
Sbjct: 41299 gtacatgttcttaagaagtt 41318

>ref|NM_178289.2| Danio rerio opsin 4 (melanopsin) (opn4), mRNA
          Length = 1668

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 405  gggaaggctttgcttggagg 424
            ||||||||||||||||||||
Sbjct: 1507 gggaaggctttgcttggagg 1526

>emb|Z97344.2|ATFCA9 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 9
          Length = 81835

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    tgcaaataaattacagatgt 111
             ||||||||||||||||||||
Sbjct: 79867 tgcaaataaattacagatgt 79886

>emb|AL161547.2|ATCHRIV47 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47
          Length = 198067

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    tgcaaataaattacagatgt 111
             ||||||||||||||||||||
Sbjct: 74879 tgcaaataaattacagatgt 74898

>emb|CR354549.7| Zebrafish DNA sequence from clone CH211-151O16 in linkage group 25,
             complete sequence
          Length = 136578

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   tgtatagtaatgtacagtgc 255
             ||||||||||||||||||||
Sbjct: 68728 tgtatagtaatgtacagtgc 68709

>emb|BX004828.21| Zebrafish DNA sequence from clone DKEY-185M8, complete sequence
          Length = 161870

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 600   gccttcgctgatgctgtgttcaca 623
             |||||| |||||||||||||||||
Sbjct: 65461 gccttctctgatgctgtgttcaca 65438

>gb|AC105123.4| Homo sapiens chromosome 15, clone RP11-94B17, complete sequence
          Length = 134569

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 265   cacccaccaaaagaaatccc 284
             ||||||||||||||||||||
Sbjct: 63819 cacccaccaaaagaaatccc 63838

>gb|AC091948.3| Homo sapiens chromosome 5 clone RP11-373N22, complete sequence
          Length = 172162

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    cctgcaaataaattacagat 109
             ||||||||||||||||||||
Sbjct: 20891 cctgcaaataaattacagat 20910

>gb|AC011346.5| Homo sapiens chromosome 5 clone CTC-295J13, complete sequence
          Length = 110077

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    cctgcaaataaattacagat 109
             ||||||||||||||||||||
Sbjct: 81917 cctgcaaataaattacagat 81936

>emb|BX005027.13| Zebrafish DNA sequence from clone DKEY-4C2 in linkage group 10,
             complete sequence
          Length = 241472

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 446   atattgtggcagagccagaa 465
             ||||||||||||||||||||
Sbjct: 28720 atattgtggcagagccagaa 28701

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 446      atattgtggcagagccagaa 465
                ||||||||||||||||||||
Sbjct: 23478901 atattgtggcagagccagaa 23478882

>emb|BX323807.8| Zebrafish DNA sequence from clone DKEY-154P10 in linkage group 2,
              complete sequence
          Length = 194313

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 405    gggaaggctttgcttggagg 424
              ||||||||||||||||||||
Sbjct: 168120 gggaaggctttgcttggagg 168101

>gb|AC093533.2| Homo sapiens chromosome 5 clone RP11-46C20, complete sequence
          Length = 154814

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 399    atgtacgggaaggctttgct 418
              ||||||||||||||||||||
Sbjct: 116692 atgtacgggaaggctttgct 116673

>dbj|AP004154.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1111_E05
          Length = 126978

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 446   atattgtggcagagccagaa 465
             ||||||||||||||||||||
Sbjct: 70316 atattgtggcagagccagaa 70297

>gb|AC139159.3| Mus musculus BAC clone RP23-119I13 from 8, complete sequence
          Length = 185950

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    aagttgatgtttaactttga 46
             ||||||||||||||||||||
Sbjct: 80999 aagttgatgtttaactttga 80980

>emb|AL669926.6| Mouse DNA sequence from clone RP23-74K21 on chromosome 2, complete
              sequence
          Length = 226854

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     agttgatgtttaactttgaa 47
              ||||||||||||||||||||
Sbjct: 153771 agttgatgtttaactttgaa 153752

>gb|AY078161.1| Danio rerio melanopsin mRNA, complete cds
          Length = 1668

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 405  gggaaggctttgcttggagg 424
            ||||||||||||||||||||
Sbjct: 1507 gggaaggctttgcttggagg 1526


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,004,524
Number of Sequences: 3902068
Number of extensions: 6004524
Number of successful extensions: 112507
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112290
Number of HSP's gapped (non-prelim): 217
length of query: 657
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 634
effective length of database: 17,143,297,704
effective search space: 10868850744336
effective search space used: 10868850744336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)