>TEP1_HUMAN (Q99973) Telomerase protein component 1 (Telomerase-associated|
           protein 1) (Telomerase protein 1) (p240) (p80 telomerase
           homolog)
          Length = 2627

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
 Frame = +3

Query: 123 CHLVVSNPSIQILMHVRIMQNHALATKQQLLAPQHRVW-----------QELDSAGYLTK 269
           CHL       Q+ M +RI   +    +++L   + R W           Q L++A  L+ 
Sbjct: 612 CHLSRQ----QLRMAMRIPVLYEQLKREKLRVHKARQWKYDGEMLNRYRQALETAVNLSV 667

Query: 270 KCSLPIIPSRTPTLLPLDLLFEAMCPPSRHPEGP 371
           K SLP++P RT  +   D   + +CP S +P+GP
Sbjct: 668 KHSLPLLPGRTVLVYLTDANADRLCPKS-NPQGP 700

>CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21|
          Length = 348

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
 Frame = +3

Query: 348 PSRHPEGPQPSRR*CRVNTATSTACPASECSSCTRSTGRQA----LAEWAMTRASKQAPX 515
           PS  P     SR   + ++A S++  AS  S   R+T   A     +  + +R+  ++P 
Sbjct: 212 PSSPPRKRARSRSASQDSSARSSSSHASPRSPTPRTTSHVASYSSYSSRSRSRSRSRSPL 271

Query: 516 RHMRAGRSVMRSRHLSSSAEAKQQPEQGHSPT*PSQCPEQSTWPSQ 653
            H R+ RS  RSR   S + ++ +    HS +  S+ P +S  PS+
Sbjct: 272 SHSRSSRSRSRSR---SRSRSRSRSPLSHSRSSRSRSPSRSRSPSR 314

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 34.3 bits (77), Expect = 0.40
 Identities = 32/100 (32%), Positives = 40/100 (40%)
 Frame = +3

Query: 339 MCPPSRHPEGPQPSRR*CRVNTATSTACPASECSSCTRSTGRQALAEWAMTRASKQAPXR 518
           M PP RH     P RR  R     S+A  +   SS + S  R    +     +S     R
Sbjct: 330 MPPPPRHRRSRSPGRRRRR-----SSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTR 384

Query: 519 HMRAGRSVMRSRHLSSSAEAKQQPEQGHSPT*PSQCPEQS 638
            +    S  R RH  SS  A   P+  HSPT     P+QS
Sbjct: 385 RLSPSASPPRRRHRPSS-PATPPPKTRHSPT-----PQQS 418

>UNG_PRVKA (P52507) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)|
          Length = 316

 Score = 33.1 bits (74), Expect = 0.90
 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 5/101 (4%)
 Frame = +3

Query: 363 EGPQPSRR*CRVNTATSTACPASECSSCTRSTGRQALAEWAMTRASKQAPXRHMRAGRSV 542
           EGP PS+R C +        PA+  +S + +    A A  A   A    P R   A R  
Sbjct: 2   EGPPPSKRPCGLPPGVRLVVPAAAAASASNAATAAAAAAPAGAGAGASKPARPSAAARPA 61

Query: 543 MRSRHLSSS-----AEAKQQPEQGHSPT*PSQCPEQSTWPS 650
             +   S++     A+A   P    +PT  +   E    PS
Sbjct: 62  KGTPAASAATTATGADASAPPPDPGAPTWDAFAAEFDVAPS 102

>PI4K_DICDI (P54677) Phosphatidylinositol 4-kinase (EC 2.7.1.67) (PI4-kinase)|
           (PtdIns-4-kinase) (PI4K-alpha)
          Length = 1093

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = +3

Query: 276 SLPIIPSRTPTLLPLDLLFEAMCPPSRHPEGPQPSRR*CRVNTATSTACPASECSSCTRS 455
           SLP+ P+++  L  L     A+ PPS+  + P PS      NT T+T    +  ++ T +
Sbjct: 725 SLPVTPTQSTVLNNLISTSTAISPPSQQQQLPSPS------NTTTTTTTTTTNTNNTTTT 778

Query: 456 T 458
           T
Sbjct: 779 T 779

>GAG_SMRVH (P21411) Gag polyprotein [Contains: Core protein p19; Core protein|
           p16; Probable core protein p35; Probable core protein
           p10]
          Length = 739

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
 Frame = +3

Query: 345 PPSRHPEGPQPSRR*CRVNTATSTACP--------ASECSSCTRSTGRQALAEWAMTRAS 500
           PP++ P  P   +     N   +T CP        ASEC S     G+  + +  + R  
Sbjct: 623 PPTQLPTQPNAPQASLIKNLGPTTKCPRCKKGFHWASECRSRLDINGQPIIKQGNLNRGQ 682

Query: 501 KQAPXRHMRAGRS 539
            Q P   M +G S
Sbjct: 683 PQGPTTGMNSGAS 695

>UNG_PRVIF (P52506) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)|
          Length = 315

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 26/94 (27%), Positives = 36/94 (38%)
 Frame = +3

Query: 363 EGPQPSRR*CRVNTATSTACPASECSSCTRSTGRQALAEWAMTRASKQAPXRHMRAGRSV 542
           EGP PS+R C +        PA+  S+   +T   A A  A   A    P R   A R  
Sbjct: 2   EGPPPSKRPCGLPPGVRLVVPAAAASASNAATAAAAAAP-AGAGAGASKPARPPAAARPA 60

Query: 543 MRSRHLSSSAEAKQQPEQGHSPT*PSQCPEQSTW 644
             +   S++  A      G   + P+  P   TW
Sbjct: 61  KGTPAASAATTA-----TGADASAPAPDPGAPTW 89

>NPHP4_MOUSE (P59240) Nephrocystin-4 (Nephroretinin)|
          Length = 1425

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -3

Query: 432 PKQDKLSRLQYLLDISAEKAEDLRDAATAGTLPQTAGQEEE 310
           PK+ ++ + Q L D+ +E A  L     AG  PQ AGQE +
Sbjct: 868 PKRKRVVQAQRLADVDSELAAMLLTHTRAGQGPQAAGQEAD 908

>CIC_MOUSE (Q924A2) Protein capicua homolog|
          Length = 1606

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 37/142 (26%), Positives = 52/142 (36%), Gaps = 23/142 (16%)
 Frame = +3

Query: 291  PSRTPTLLPLDLLFE---AMCPPSRH--PEGPQPSRR*CRVNTATSTACPASECSSCTRS 455
            P   P+  P  L++    +  PP+    P+GP  S        AT+T  P S   S T  
Sbjct: 1104 PLGPPSQAPPSLVYTVATSTTPPAATILPKGPPAS--------ATATPAPTSPFPSATAG 1155

Query: 456  TGRQALAEWAMTRASKQAPXRHMRA--------------GRSVMRSRHLSSSAEAKQ--- 584
            +   +L      R S +AP +   A              GR     R  S S  A++   
Sbjct: 1156 SMTYSLVAPKAQRPSPKAPQKVKAAIASIPVGSFESGTTGRPGSTPRQSSDSGVAREPAA 1215

Query: 585  -QPEQGHSPT*PSQCPEQSTWP 647
             + E    PT P+  P   TWP
Sbjct: 1216 PESELEGQPTPPAPPPPTETWP 1237

>MATK_TRISM (Q8MCM3) Maturase K (Intron maturase)|
          Length = 509

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
 Frame = -3

Query: 507 PASKPLSWPTPRELDDL---------YCVYMKSIPKQDKLSRLQYLLDISAEKAEDLRDA 355
           P SKP+ W    + D +          C Y     K+  L R++Y+L +S  K    +  
Sbjct: 386 PISKPV-WADSSDFDIIERFLRICSNLCHYYHGSSKKKSLYRIKYILRLSCIKTLACKHK 444

Query: 354 ATAGTLPQTAGQEE 313
           +T     QT+G EE
Sbjct: 445 STVRAFLQTSGSEE 458

>PMPI_CHLTR (O84882) Probable outer membrane protein pmpI precursor|
           (Polymorphic membrane protein I)
          Length = 878

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 7/147 (4%)
 Frame = +3

Query: 174 IMQNHALATKQQLLAPQHRVWQELDSAGYLTKKCSLPIIPSRTPTLLPLDLLFEAMCPPS 353
           + QN++  T  Q L         + +A YL K   L  + +R   +L     F+ +   S
Sbjct: 313 LFQNNSQRTSDQGL---------VRNAIYLEKDAILSSLEARNGDIL----FFDPIVQES 359

Query: 354 RHPEGPQPSRR*CRVNTAT-STACPASECSSCTRST--GRQALAEWAMT----RASKQAP 512
              E P PS     V + T +TA P    +S  RS     + L+E   T     +  Q P
Sbjct: 360 SSKESPLPSSLQASVTSPTPATASPLVIQTSANRSVIFSSERLSEEEKTPDNLTSQLQQP 419

Query: 513 XRHMRAGRSVMRSRHLSSSAEAKQQPE 593
              +++GR V++ R + S+    Q P+
Sbjct: 420 IE-LKSGRLVLKDRAVLSAPSLSQDPQ 445

>KR106_HUMAN (P60371) Keratin-associated protein 10-6 (Keratin-associated|
           protein 10.6) (High sulfur keratin-associated protein
           10.6) (Keratin-associated protein 18-6)
           (Keratin-associated protein 18.6)
          Length = 365

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 253 AESSSCQTRCCGANSCCFVARAWFCMILTCISIC 152
           A +SSCQ  CC   SC  +     C    C S+C
Sbjct: 325 ASASSCQPSCCRTASCVSLLCRPMCSRPACYSLC 358

>KR10A_HUMAN (P60014) Keratin-associated protein 10-10 (Keratin-associated|
           protein 10.10) (High sulfur keratin-associated protein
           10.10) (Keratin-associated protein 18-10)
           (Keratin-associated protein 18.10)
          Length = 251

 Score = 29.6 bits (65), Expect = 10.0
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 253 AESSSCQTRCCGANSCCFVARAWFCMILTCISIC 152
           A +SSCQ  CC   SC  +     C    C S+C
Sbjct: 211 ASASSCQPSCCRTASCVSLLCRPVCSRPACYSLC 244

>KCNH2_RABIT (Q8WNY2) Potassium voltage-gated channel subfamily H member 2|
           (Voltage-gated potassium channel subunit Kv11.1)
           (Ether-a-go-go-related gene potassium channel 1) (ERG1)
           (RERG) (ra-erg) (Ether-a-go-go-related protein 1)
           (Eag-related protein 1)
          Length = 1161

 Score = 29.6 bits (65), Expect = 10.0
 Identities = 24/76 (31%), Positives = 32/76 (42%)
 Frame = +3

Query: 345 PPSRHPEGPQPSRR*CRVNTATSTACPASECSSCTRSTGRQALAEWAMTRASKQAPXRHM 524
           PP     GP PS R   +N       P +  SSC+ +  R   +  ++ RAS       M
Sbjct: 241 PPPVSAPGPHPSLRAHSLN-------PDASGSSCSLARTRSRESCASVRRASSADDIEAM 293

Query: 525 RAGRSVMRSRHLSSSA 572
           RAG      RH S+ A
Sbjct: 294 RAGALPPPPRHASTGA 309

>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa|
            immediate-early protein)
          Length = 1487

 Score = 29.6 bits (65), Expect = 10.0
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
 Frame = +3

Query: 210  LLAPQHRVWQELDSA-------GYLTKKCSLPIIPSRTPTLLPLDLLFEAMCPPSRHPEG 368
            LLAP  R  Q   S+       G    + SL  +P   PT+       ++   PS H + 
Sbjct: 800  LLAPPTRSQQPSSSSPGGEPFSGSAAAEGSLQTLPPLWPTVPGK----QSATVPSSHSQS 855

Query: 369  PQPSRR*CRVNTATSTACPASECSSCTRSTGRQALAEWAMTRASKQAP 512
            PQ S+        T+T C A++ ++  RS G+Q   + A +  +  +P
Sbjct: 856  PQHSQSGGGAGATTATCCRATQTNA--RSRGQQHQPQKARSPQAAASP 901

>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa|
            immediate-early protein)
          Length = 1487

 Score = 29.6 bits (65), Expect = 10.0
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
 Frame = +3

Query: 210  LLAPQHRVWQELDSA-------GYLTKKCSLPIIPSRTPTLLPLDLLFEAMCPPSRHPEG 368
            LLAP  R  Q   S+       G    + SL  +P   PT+       ++   PS H + 
Sbjct: 800  LLAPPTRSQQPSSSSPGGEPFSGSAAAEGSLQTLPPLWPTVPGK----QSATVPSSHSQS 855

Query: 369  PQPSRR*CRVNTATSTACPASECSSCTRSTGRQALAEWAMTRASKQAP 512
            PQ S+        T+T C A++ ++  RS G+Q   + A +  +  +P
Sbjct: 856  PQHSQSGGGAGATTATCCRATQTNA--RSRGQQHQPQKARSPQAAASP 901

>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa|
            immediate-early protein)
          Length = 1487

 Score = 29.6 bits (65), Expect = 10.0
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
 Frame = +3

Query: 210  LLAPQHRVWQELDSA-------GYLTKKCSLPIIPSRTPTLLPLDLLFEAMCPPSRHPEG 368
            LLAP  R  Q   S+       G    + SL  +P   PT+       ++   PS H + 
Sbjct: 800  LLAPPTRSQQPSSSSPGGEPFSGSAAAEGSLQTLPPLWPTVPGK----QSATVPSSHSQS 855

Query: 369  PQPSRR*CRVNTATSTACPASECSSCTRSTGRQALAEWAMTRASKQAP 512
            PQ S+        T+T C A++ ++  RS G+Q   + A +  +  +P
Sbjct: 856  PQHSQSGGGAGATTATCCRATQTNA--RSRGQQHQPQKARSPQAAASP 901


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,945,340
Number of Sequences: 219361
Number of extensions: 2093514
Number of successful extensions: 7665
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 7047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7638
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7536258401
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)