Clone Information

BLAST Search Result

Clone Name	rbags7b01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|AL731639.3\|OSJN00288 Oryza sativa genomic DNA, chromosome 4,...	297	2e-77
2	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	297	2e-77
3	ref\|XM_472386.1\| Oryza sativa (japonica cultivar-group), predic...	285	9e-74
4	gb\|AY108784.1\| Zea mays PCO133857 mRNA sequence	167	6e-38
5	gb\|AY166599.1\| Oryza sativa (indica cultivar-group) ATP-dependen...	161	4e-36
6	ref\|XM_466044.1\| Oryza sativa (japonica cultivar-group), mRNA	155	2e-34
7	dbj\|AK068727.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	155	2e-34
8	dbj\|AK061666.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	131	3e-27
9	gb\|AY108078.1\| Zea mays PCO134480 mRNA sequence	125	2e-25
10	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	94	7e-16
11	dbj\|AP004777.3\| Oryza sativa (japonica cultivar-group) genomic D...	94	7e-16
12	gb\|AC024817.1\| Caenorhabditis elegans cosmid Y54G2A, complete se...	42	2.4
13	ref\|NM_001038351.1\| Caenorhabditis elegans Y54G2A.40 (Y54G2A.40)...	42	2.4
14	emb\|AM233362.1\| Francisella tularensis subsp. holarctica strain ...	42	2.4
15	emb\|AJ749949.1\| Francisella tularensis subsp. tularensis SCHU S4...	42	2.4
16	gb\|AY355385.1\| Rickettsia slovaca surface antigen (sca2) gene, p...	40	9.4
17	gb\|AY355384.1\| Rickettsia sibirica surface antigen (sca2) gene, ...	40	9.4
18	gb\|AY355383.1\| Rickettsia rickettsii surface antigen (sca2) gene...	40	9.4
19	gb\|AY355382.1\| Rickettsia rhipicephali surface antigen (sca2) ge...	40	9.4
20	gb\|AY355381.1\| Rickettsia parkeri surface antigen (sca2) gene, p...	40	9.4
21	gb\|AY355380.1\| Rickettsia montanensis surface antigen (sca2) gen...	40	9.4
22	gb\|AY355378.1\| Rickettsia aeschlimannii surface antigen (sca2) g...	40	9.4
23	gb\|AY355377.1\| Rickettsia massiliae surface antigen (sca2) gene,...	40	9.4
24	gb\|AY355376.1\| Rickettsia japonica surface antigen (sca2) gene, ...	40	9.4
25	gb\|AY355369.1\| Rickettsia africae surface antigen (sca2) gene, p...	40	9.4
26	gb\|AY355368.1\| Rickettsia honei surface antigen (sca2) gene, par...	40	9.4
27	gb\|AE008578.1\| Rickettsia conorii str. Malish 7, section 10 of 1...	40	9.4
28	gb\|AC132595.3\| Mus musculus BAC clone RP24-229G7 from chromosome...	40	9.4
29	gb\|AY970504.1\| Rickettsia africae cell surface antigen Sca2 (sca...	40	9.4
30	emb\|CR940306.3\| M.truncatula DNA sequence from clone MTH2-10B11 ...	40	9.4
31	gb\|AC165968.3\| Mus musculus BAC clone RP23-181K4 from chromosome...	40	9.4
32	emb\|CR380952.1\| Candida glabrata strain CBS138 chromosome F comp...	40	9.4
33	emb\|AL604063.4\| Mouse DNA sequence from clone RP23-467J12 on chr...	40	9.4
34	gb\|AC025366.11\| Homo sapiens chromosome 8, clone RP11-238I10, co...	40	9.4
35	dbj\|AK132089.1\| Mus musculus 12 days embryo head cDNA, RIKEN ful...	40	9.4
36	gb\|AC159746.5\| Mus musculus 6 BAC RP23-437F11 (Roswell Park Canc...	40	9.4
37	gb\|AC019067.9\| Homo sapiens BAC clone RP11-171B14 from 2, comple...	40	9.4
38	dbj\|BS000125.1\| Pan troglodytes chromosome 22 clone:PTB-147B08, ...	40	9.4
39	dbj\|AP001730.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	40	9.4
40	emb\|AL954841.10\| Zebrafish DNA sequence from clone DKEY-3B8, com...	40	9.4
41	emb\|AL358339.2\|CNS05TEA Human chromosome 14 DNA sequence BAC C-3...	40	9.4
42	emb\|AL512361.3\|CNS07EFA Human chromosome 14 DNA sequence BAC R-3...	40	9.4
43	gb\|AY695330.1\| Cyanothece sp. WH 8901 isolate 2 polyketide synth...	40	9.4
44	dbj\|AP000158.1\| Homo sapiens genomic DNA, chromosome 21q22.2, DS...	40	9.4
45	dbj\|AP000017.2\| Homo sapiens genomic DNA of 21q22.2 Down Syndrom...	40	9.4
46	dbj\|AP003693.2\| Homo sapiens genomic DNA, chromosome 8q23, clone...	40	9.4
47	dbj\|AP001427.1\| Homo sapiens genomic DNA, chromosome 21q22.2, cl...	40	9.4

>emb|AL731639.3|OSJN00288 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000315_02,
             complete sequence
          Length = 112404

 Score =  297 bits (150), Expect = 2e-77
 Identities = 276/318 (86%)
 Strand = Plus / Minus

                                                                         
Query: 226   ccttcaaagcgttggtgttggatcagaaacttgaacagtctgatcattcaaccggctcaa 285
             ||||||||| |||||||| ||||| || | ||| || |||||||||||||  ||||||||
Sbjct: 78194 ccttcaaagtgttggtgtcggatcggataattggacggtctgatcattcagtcggctcaa 78135

                                                                         
Query: 286   gcaaggttttcccttgtcatcagtgtccatcattatggtatcaccaggtttgtactgccc 345
             ||||||||| ||| || |||||||||||| ||||||||| |||||||| ||| |||| ||
Sbjct: 78134 gcaaggtttccccgtggcatcagtgtccaccattatggtgtcaccaggcttgaactgacc 78075

                                                                         
Query: 346   agagagaattgcttcgctgatgacatcctcaaccaattgagtgacggcccttctaagtgg 405
             ||| ||||||||||||||||| |||||||||||||  ||||||||||| ||||| |||||
Sbjct: 78074 agacagaattgcttcgctgataacatcctcaaccagctgagtgacggctcttcttagtgg 78015

                                                                         
Query: 406   ccgtgcaccatagctcttgtcgtatccttgctgagaaatcatgttcttcatggcatcaga 465
             ||||||||| |||||||||||||| || ||||||||||||| || |||||||| ||||||
Sbjct: 78014 ccgtgcaccgtagctcttgtcgtacccatgctgagaaatcaggtccttcatggaatcaga 77955

                                                                         
Query: 466   tactactaagccgataccgagggccaaaagcctacccttcacctcttccataattatatt 525
              ||  ||| ||| || || ||||| |||| ||||||||||||||||| ||  ||||||||
Sbjct: 77954 cacctctaggccaatcccaagggctaaaatcctacccttcacctcttgcagcattatatt 77895

                               
Query: 526   aagaatagccagcatctg 543
              |||||||||||||||||
Sbjct: 77894 gagaatagccagcatctg 77877



 Score =  115 bits (58), Expect = 2e-22
 Identities = 112/130 (86%)
 Strand = Plus / Minus

                                                                         
Query: 541   ctgagtcttctcaagtggacggaacacaaccacctcatccattctattgagcaattcagg 600
             |||||| |||||||| ||  ||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 77615 ctgagttttctcaagagggtggaacacaaccacttcatcaattctattgagcaattcggg 77556

                                                                         
Query: 601   tcgaaaaaatgccttcaactcttccattaccaaggatttcattacagcgtatgtgttctc 660
              || |||||||||||||  |||||||||||||| ||||||||| |||| ||||  || ||
Sbjct: 77555 acggaaaaatgccttcagttcttccattaccaaagatttcattgcagcatatgacttttc 77496

                       
Query: 661   ttctgtatca 670
             ||| ||||||
Sbjct: 77495 ttcagtatca 77486



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 79/91 (86%)
 Strand = Plus / Minus

                                                                         
Query: 64    tatgtacaggtgatgtaagacttcaatttacattatattcacggagaaactccagcatct 123
             ||||||||| |||||| ||| |  |||||||||||||| || ||||||| |||||||| |
Sbjct: 78359 tatgtacagttgatgttagattcaaatttacattatatgcatggagaaattccagcatgt 78300

                                            
Query: 124   ggagaatatgtacatgaactacggaacctat 154
             ||||  ||||||||||||||| |||||||||
Sbjct: 78299 ggaggctatgtacatgaactatggaacctat 78269

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  297 bits (150), Expect = 2e-77
 Identities = 276/318 (86%)
 Strand = Plus / Minus

                                                                            
Query: 226      ccttcaaagcgttggtgttggatcagaaacttgaacagtctgatcattcaaccggctcaa 285
                ||||||||| |||||||| ||||| || | ||| || |||||||||||||  ||||||||
Sbjct: 20108289 ccttcaaagtgttggtgtcggatcggataattggacggtctgatcattcagtcggctcaa 20108230

                                                                            
Query: 286      gcaaggttttcccttgtcatcagtgtccatcattatggtatcaccaggtttgtactgccc 345
                ||||||||| ||| || |||||||||||| ||||||||| |||||||| ||| |||| ||
Sbjct: 20108229 gcaaggtttccccgtggcatcagtgtccaccattatggtgtcaccaggcttgaactgacc 20108170

                                                                            
Query: 346      agagagaattgcttcgctgatgacatcctcaaccaattgagtgacggcccttctaagtgg 405
                ||| ||||||||||||||||| |||||||||||||  ||||||||||| ||||| |||||
Sbjct: 20108169 agacagaattgcttcgctgataacatcctcaaccagctgagtgacggctcttcttagtgg 20108110

                                                                            
Query: 406      ccgtgcaccatagctcttgtcgtatccttgctgagaaatcatgttcttcatggcatcaga 465
                ||||||||| |||||||||||||| || ||||||||||||| || |||||||| ||||||
Sbjct: 20108109 ccgtgcaccgtagctcttgtcgtacccatgctgagaaatcaggtccttcatggaatcaga 20108050

                                                                            
Query: 466      tactactaagccgataccgagggccaaaagcctacccttcacctcttccataattatatt 525
                 ||  ||| ||| || || ||||| |||| ||||||||||||||||| ||  ||||||||
Sbjct: 20108049 cacctctaggccaatcccaagggctaaaatcctacccttcacctcttgcagcattatatt 20107990

                                  
Query: 526      aagaatagccagcatctg 543
                 |||||||||||||||||
Sbjct: 20107989 gagaatagccagcatctg 20107972



 Score =  115 bits (58), Expect = 2e-22
 Identities = 112/130 (86%)
 Strand = Plus / Minus

                                                                            
Query: 541      ctgagtcttctcaagtggacggaacacaaccacctcatccattctattgagcaattcagg 600
                |||||| |||||||| ||  ||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 20107710 ctgagttttctcaagagggtggaacacaaccacttcatcaattctattgagcaattcggg 20107651

                                                                            
Query: 601      tcgaaaaaatgccttcaactcttccattaccaaggatttcattacagcgtatgtgttctc 660
                 || |||||||||||||  |||||||||||||| ||||||||| |||| ||||  || ||
Sbjct: 20107650 acggaaaaatgccttcagttcttccattaccaaagatttcattgcagcatatgacttttc 20107591

                          
Query: 661      ttctgtatca 670
                ||| ||||||
Sbjct: 20107590 ttcagtatca 20107581



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 79/91 (86%)
 Strand = Plus / Minus

                                                                            
Query: 64       tatgtacaggtgatgtaagacttcaatttacattatattcacggagaaactccagcatct 123
                ||||||||| |||||| ||| |  |||||||||||||| || ||||||| |||||||| |
Sbjct: 20108454 tatgtacagttgatgttagattcaaatttacattatatgcatggagaaattccagcatgt 20108395

                                               
Query: 124      ggagaatatgtacatgaactacggaacctat 154
                ||||  ||||||||||||||| |||||||||
Sbjct: 20108394 ggaggctatgtacatgaactatggaacctat 20108364

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>ref|XM_472386.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2634

 Score =  285 bits (144), Expect = 9e-74
 Identities = 270/312 (86%)
 Strand = Plus / Minus

                                                                        
Query: 229  tcaaagcgttggtgttggatcagaaacttgaacagtctgatcattcaaccggctcaagca 288
            |||||| |||||||| ||||| || | ||| || |||||||||||||  |||||||||||
Sbjct: 2634 tcaaagtgttggtgtcggatcggataattggacggtctgatcattcagtcggctcaagca 2575

                                                                        
Query: 289  aggttttcccttgtcatcagtgtccatcattatggtatcaccaggtttgtactgcccaga 348
            |||||| ||| || |||||||||||| ||||||||| |||||||| ||| |||| |||||
Sbjct: 2574 aggtttccccgtggcatcagtgtccaccattatggtgtcaccaggcttgaactgaccaga 2515

                                                                        
Query: 349  gagaattgcttcgctgatgacatcctcaaccaattgagtgacggcccttctaagtggccg 408
             ||||||||||||||||| |||||||||||||  ||||||||||| ||||| ||||||||
Sbjct: 2514 cagaattgcttcgctgataacatcctcaaccagctgagtgacggctcttcttagtggccg 2455

                                                                        
Query: 409  tgcaccatagctcttgtcgtatccttgctgagaaatcatgttcttcatggcatcagatac 468
            |||||| |||||||||||||| || ||||||||||||| || |||||||| |||||| ||
Sbjct: 2454 tgcaccgtagctcttgtcgtacccatgctgagaaatcaggtccttcatggaatcagacac 2395

                                                                        
Query: 469  tactaagccgataccgagggccaaaagcctacccttcacctcttccataattatattaag 528
              ||| ||| || || ||||| |||| ||||||||||||||||| ||  |||||||| ||
Sbjct: 2394 ctctaggccaatcccaagggctaaaatcctacccttcacctcttgcagcattatattgag 2335

                        
Query: 529  aatagccagcat 540
            ||||||||||||
Sbjct: 2334 aatagccagcat 2323



 Score =  115 bits (58), Expect = 2e-22
 Identities = 112/130 (86%)
 Strand = Plus / Minus

                                                                        
Query: 541  ctgagtcttctcaagtggacggaacacaaccacctcatccattctattgagcaattcagg 600
            |||||| |||||||| ||  ||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 2265 ctgagttttctcaagagggtggaacacaaccacttcatcaattctattgagcaattcggg 2206

                                                                        
Query: 601  tcgaaaaaatgccttcaactcttccattaccaaggatttcattacagcgtatgtgttctc 660
             || |||||||||||||  |||||||||||||| ||||||||| |||| ||||  || ||
Sbjct: 2205 acggaaaaatgccttcagttcttccattaccaaagatttcattgcagcatatgacttttc 2146

                      
Query: 661  ttctgtatca 670
            ||| ||||||
Sbjct: 2145 ttcagtatca 2136

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>gb|AY108784.1| Zea mays PCO133857 mRNA sequence
          Length = 714

 Score =  167 bits (84), Expect = 6e-38
 Identities = 273/336 (81%)
 Strand = Plus / Minus

                                                                       
Query: 339 actgcccagagagaattgcttcgctgatgacatcctcaaccaattgagtgacggcccttc 398
           |||| ||| ||||||||||||| ||||| |||||||||||||  ||||| ||||| ||||
Sbjct: 704 actgtccaaagagaattgcttcactgataacatcctcaaccagctgagtaacggctcttc 645

                                                                       
Query: 399 taagtggccgtgcaccatagctcttgtcgtatccttgctgagaaatcatgttcttcatgg 458
            |||||||||||| |||||| | ||||| || ||||||||||||||||   ||||||| |
Sbjct: 644 gaagtggccgtgccccatagattttgtcatacccttgctgagaaatcagaatcttcattg 585

                                                                       
Query: 459 catcagatactactaagccgataccgagggccaaaagcctacccttcacctcttccataa 518
             || |||||  ||| ||| || || ||||| | ||| |||| ||| || ||||  | ||
Sbjct: 584 attctgatacctctaggccaatcccaagggctagaagtctactcttgacttcttgtagaa 525

                                                                       
Query: 519 ttatattaagaatagccagcatctgagtcttctcaagtggacggaacacaaccacctcat 578
           |||  || |||||||||| ||||||  |||| ||||| ||  | || |||||||| ||||
Sbjct: 524 ttaggttgagaatagccatcatctggatcttttcaagagggtgaaatacaaccacttcat 465

                                                                       
Query: 579 ccattctattgagcaattcaggtcgaaaaaatgccttcaactcttccattaccaaggatt 638
           ||| |||||||||||||||||| |||||||||||||||| ||||||||| || |  ||||
Sbjct: 464 ccaatctattgagcaattcaggccgaaaaaatgccttcagctcttccatcacaagtgatt 405

                                               
Query: 639 tcattacagcgtatgtgttctcttctgtatcacttt 674
           ||||  |||| || ||| |||| |||||||| ||||
Sbjct: 404 tcatcgcagcataggtggtctcctctgtatcccttt 369

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>gb|AY166599.1| Oryza sativa (indica cultivar-group) ATP-dependent Clp protease
            ATP-binding subunit precursor (CLPD1) mRNA, complete cds;
            nuclear gene for chloroplast product
          Length = 3142

 Score =  161 bits (81), Expect = 4e-36
 Identities = 294/365 (80%)
 Strand = Plus / Minus

                                                                        
Query: 279  ggctcaagcaaggttttcccttgtcatcagtgtccatcattatggtatcaccaggtttgt 338
            |||||| ||||||||| |||  | ||||| | ||||||| ||| || || ||||| ||||
Sbjct: 2872 ggctcatgcaaggtttccccgcggcatcaatatccatcagtatcgtgtccccaggcttgt 2813

                                                                        
Query: 339  actgcccagagagaattgcttcgctgatgacatcctcaaccaattgagtgacggcccttc 398
            | |  ||| | ||||||||||||||||| |||||||||| ||  || |||||||| || |
Sbjct: 2812 attcgccaaatagaattgcttcgctgatcacatcctcaatcaggtgggtgacggctctcc 2753

                                                                        
Query: 399  taagtggccgtgcaccatagctcttgtcgtatccttgctgagaaatcatgttcttcatgg 458
            | |||||||| ||||| ||||||||||| || ||||  |   |||||| || |||||| |
Sbjct: 2752 tcagtggccgcgcaccgtagctcttgtcatagccttcttcgcaaatcaggtccttcattg 2693

                                                                        
Query: 459  catcagatactactaagccgataccgagggccaaaagcctacccttcacctcttccataa 518
            |||| || ||  | | ||| || || ||||| || |||||||||||||| ||||  |  |
Sbjct: 2692 catcggacacctcgaggcctattccaagggctaacagcctacccttcacttcttgtagga 2633

                                                                        
Query: 519  ttatattaagaatagccagcatctgagtcttctcaagtggacggaacacaaccacctcat 578
            | |||| |||||| || ||||||||||| ||||| |  |||||||| ||||||| |||||
Sbjct: 2632 tgatatcaagaattgctagcatctgagttttctctaagggacggaatacaaccatctcat 2573

                                                                        
Query: 579  ccattctattgagcaattcaggtcgaaaaaatgccttcaactcttccattaccaaggatt 638
            | ||||| ||||||||||| || || |||||||||||||||||||||||||| |  ||||
Sbjct: 2572 cgattctgttgagcaattctggacggaaaaatgccttcaactcttccattactagagatt 2513

                 
Query: 639  tcatt 643
            |||||
Sbjct: 2512 tcatt 2508

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>ref|XM_466044.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2817

 Score =  155 bits (78), Expect = 2e-34
 Identities = 240/294 (81%)
 Strand = Plus / Minus

                                                                        
Query: 350  agaattgcttcgctgatgacatcctcaaccaattgagtgacggcccttctaagtggccgt 409
            ||||||||||||||||| |||||||||| ||  || |||||||| || || |||||||| 
Sbjct: 2696 agaattgcttcgctgatcacatcctcaatcaggtgggtgacggctctcctcagtggccgc 2637

                                                                        
Query: 410  gcaccatagctcttgtcgtatccttgctgagaaatcatgttcttcatggcatcagatact 469
            ||||| ||||||||||| || ||||  |   |||||| || |||||| ||||| || || 
Sbjct: 2636 gcaccgtagctcttgtcatagccttcttcgcaaatcaggtccttcattgcatcggacacc 2577

                                                                        
Query: 470  actaagccgataccgagggccaaaagcctacccttcacctcttccataattatattaaga 529
             | | ||| || || ||||| || |||||||||||||| ||||  |  || |||| ||||
Sbjct: 2576 tcgaggcctattccaagggctaacagcctacccttcacttcttgtaggatgatatcaaga 2517

                                                                        
Query: 530  atagccagcatctgagtcttctcaagtggacggaacacaaccacctcatccattctattg 589
            || || ||||||||||| ||||| |  |||||||| ||||||| |||||| ||||| |||
Sbjct: 2516 attgctagcatctgagttttctctaagggacggaatacaaccatctcatcgattctgttg 2457

                                                                  
Query: 590  agcaattcaggtcgaaaaaatgccttcaactcttccattaccaaggatttcatt 643
            |||||||| || || |||||||||||||||||||||||||| |  |||||||||
Sbjct: 2456 agcaattctggacggaaaaatgccttcaactcttccattactagagatttcatt 2403

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>dbj|AK068727.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159L15, full
            insert sequence
          Length = 2619

 Score =  155 bits (78), Expect = 2e-34
 Identities = 240/294 (81%)
 Strand = Plus / Minus

                                                                        
Query: 350  agaattgcttcgctgatgacatcctcaaccaattgagtgacggcccttctaagtggccgt 409
            ||||||||||||||||| |||||||||| ||  || |||||||| || || |||||||| 
Sbjct: 2349 agaattgcttcgctgatcacatcctcaatcaggtgggtgacggctctcctcagtggccgc 2290

                                                                        
Query: 410  gcaccatagctcttgtcgtatccttgctgagaaatcatgttcttcatggcatcagatact 469
            ||||| ||||||||||| || ||||  |   |||||| || |||||| ||||| || || 
Sbjct: 2289 gcaccgtagctcttgtcatagccttcttcgcaaatcaggtccttcattgcatcggacacc 2230

                                                                        
Query: 470  actaagccgataccgagggccaaaagcctacccttcacctcttccataattatattaaga 529
             | | ||| || || ||||| || |||||||||||||| ||||  |  || |||| ||||
Sbjct: 2229 tcgaggcctattccaagggctaacagcctacccttcacttcttgtaggatgatatcaaga 2170

                                                                        
Query: 530  atagccagcatctgagtcttctcaagtggacggaacacaaccacctcatccattctattg 589
            || || ||||||||||| ||||| |  |||||||| ||||||| |||||| ||||| |||
Sbjct: 2169 attgctagcatctgagttttctctaagggacggaatacaaccatctcatcgattctgttg 2110

                                                                  
Query: 590  agcaattcaggtcgaaaaaatgccttcaactcttccattaccaaggatttcatt 643
            |||||||| || || |||||||||||||||||||||||||| |  |||||||||
Sbjct: 2109 agcaattctggacggaaaaatgccttcaactcttccattactagagatttcatt 2056

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>dbj|AK061666.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-F02, full
           insert sequence
          Length = 362

 Score =  131 bits (66), Expect = 3e-27
 Identities = 120/138 (86%)
 Strand = Plus / Minus

                                                                       
Query: 226 ccttcaaagcgttggtgttggatcagaaacttgaacagtctgatcattcaaccggctcaa 285
           ||||||||| |||||||| ||||| || | ||| || |||||||||||||  ||||||||
Sbjct: 138 ccttcaaagtgttggtgtcggatcggataattggacggtctgatcattcagtcggctcaa 79

                                                                       
Query: 286 gcaaggttttcccttgtcatcagtgtccatcattatggtatcaccaggtttgtactgccc 345
           ||||||||| ||| || |||||||||||| ||||||||| |||||||| ||| |||| ||
Sbjct: 78  gcaaggtttccccgtggcatcagtgtccaccattatggtgtcaccaggcttgaactgacc 19

                             
Query: 346 agagagaattgcttcgct 363
           ||| ||||||||||||||
Sbjct: 18  agacagaattgcttcgct 1



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 79/91 (86%)
 Strand = Plus / Minus

                                                                       
Query: 64  tatgtacaggtgatgtaagacttcaatttacattatattcacggagaaactccagcatct 123
           ||||||||| |||||| ||| |  |||||||||||||| || ||||||| |||||||| |
Sbjct: 303 tatgtacagttgatgttagattcaaatttacattatatgcatggagaaattccagcatgt 244

                                          
Query: 124 ggagaatatgtacatgaactacggaacctat 154
           ||||  ||||||||||||||| |||||||||
Sbjct: 243 ggaggctatgtacatgaactatggaacctat 213

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>gb|AY108078.1| Zea mays PCO134480 mRNA sequence
          Length = 1046

 Score =  125 bits (63), Expect = 2e-25
 Identities = 267/335 (79%)
 Strand = Plus / Minus

                                                                       
Query: 309 tgtccatcattatggtatcaccaggtttgtactgcccagagagaattgcttcgctgatga 368
           ||||||||| ||| || ||||| || ||| |||  ||| | ||||| |||||||||||||
Sbjct: 667 tgtccatcagtatcgtgtcaccgggcttgaactcgccaaaaagaatcgcttcgctgatga 608

                                                                       
Query: 369 catcctcaaccaattgagtgacggcccttctaagtggccgtgcaccatagctcttgtcgt 428
           ||||||| |  |  || ||||| || || || || ||||| || |||||||| |||||||
Sbjct: 607 catcctcgataatgtgggtgacagctctcctcagaggccgagcgccatagcttttgtcgt 548

                                                                       
Query: 429 atccttgctgagaaatcatgttcttcatggcatcagatactactaagccgataccgaggg 488
           | || |  ||  | |||| || |||||| |||||||| ||  | || || || |||||||
Sbjct: 547 agccctcttggcatatcaggtccttcattgcatcagacacctccaaacctatcccgaggg 488

                                                                       
Query: 489 ccaaaagcctacccttcacctcttccataattatattaagaatagccagcatctgagtct 548
           ||||||| |  ||||| || || |  |  || |||| |||||| ||||||||||||||||
Sbjct: 487 ccaaaagtcggcccttgacttcctttaggatgatatcaagaatggccagcatctgagtct 428

                                                                       
Query: 549 tctcaagtggacggaacacaaccacctcatccattctattgagcaattcaggtcgaaaaa 608
           |||| || |||||||||||||||| ||| || |||||||||||||| || || || ||||
Sbjct: 427 tctccagaggacggaacacaaccatctcgtcgattctattgagcaactctggacggaaaa 368

                                              
Query: 609 atgccttcaactcttccattaccaaggatttcatt 643
           ||||||| | ||||||||| || ||||||||||||
Sbjct: 367 atgccttgagctcttccatcactaaggatttcatt 333

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                            
Query: 557      ggacggaacacaaccacctcatccattctattgagcaattcaggtcgaaaaaatgccttc 616
                |||||||| ||||||| |||||| ||||| ||||||||||| || || ||||||||||||
Sbjct: 19274919 ggacggaatacaaccatctcatcgattctgttgagcaattctggacggaaaaatgccttc 19274860

                                           
Query: 617      aactcttccattaccaaggatttcatt 643
                |||||||||||||| |  |||||||||
Sbjct: 19274859 aactcttccattactagagatttcatt 19274833



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                            
Query: 350      agaattgcttcgctgatgacatcctcaaccaattgagtgacggcccttctaagtggccgt 409
                ||||||||||||||||| |||||||||| ||  || |||||||| || || |||||||| 
Sbjct: 19275357 agaattgcttcgctgatcacatcctcaatcaggtgggtgacggctctcctcagtggccgc 19275298

                                 
Query: 410      gcaccatagctcttgtc 426
                ||||| |||||||||||
Sbjct: 19275297 gcaccgtagctcttgtc 19275281

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>dbj|AP004777.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0458B05
          Length = 144917

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                         
Query: 557   ggacggaacacaaccacctcatccattctattgagcaattcaggtcgaaaaaatgccttc 616
             |||||||| ||||||| |||||| ||||| ||||||||||| || || ||||||||||||
Sbjct: 42717 ggacggaatacaaccatctcatcgattctgttgagcaattctggacggaaaaatgccttc 42658

                                        
Query: 617   aactcttccattaccaaggatttcatt 643
             |||||||||||||| |  |||||||||
Sbjct: 42657 aactcttccattactagagatttcatt 42631



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                         
Query: 350   agaattgcttcgctgatgacatcctcaaccaattgagtgacggcccttctaagtggccgt 409
             ||||||||||||||||| |||||||||| ||  || |||||||| || || |||||||| 
Sbjct: 43155 agaattgcttcgctgatcacatcctcaatcaggtgggtgacggctctcctcagtggccgc 43096

                              
Query: 410   gcaccatagctcttgtc 426
             ||||| |||||||||||
Sbjct: 43095 gcaccgtagctcttgtc 43079

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>gb|AC024817.1| Caenorhabditis elegans cosmid Y54G2A, complete sequence
          Length = 286680

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 612    ccttcaactcttccattaccaaggatttc 640
              ||||||||||||||||| ||| |||||||
Sbjct: 101005 ccttcaactcttccatttccacggatttc 100977

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>ref|NM_001038351.1| Caenorhabditis elegans Y54G2A.40 (Y54G2A.40) mRNA, complete cds
          Length = 1911

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 612  ccttcaactcttccattaccaaggatttc 640
            ||||||||||||||||| ||| |||||||
Sbjct: 1855 ccttcaactcttccatttccacggatttc 1827

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>emb|AM233362.1| Francisella tularensis subsp. holarctica strain LVS complete genome
          Length = 1895994

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 454     catggcatcagatactactaa 474
               |||||||||||||||||||||
Sbjct: 1222106 catggcatcagatactactaa 1222086

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>emb|AJ749949.1| Francisella tularensis subsp. tularensis SCHU S4 complete genome
          Length = 1892819

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 454    catggcatcagatactactaa 474
              |||||||||||||||||||||
Sbjct: 940226 catggcatcagatactactaa 940246

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>gb|AY355385.1| Rickettsia slovaca surface antigen (sca2) gene, partial cds
          Length = 5208

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 514  cataattatattaagaatag 533
            ||||||||||||||||||||
Sbjct: 4680 cataattatattaagaatag 4699

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>gb|AY355384.1| Rickettsia sibirica surface antigen (sca2) gene, complete cds
          Length = 5439

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 514  cataattatattaagaatag 533
            ||||||||||||||||||||
Sbjct: 4891 cataattatattaagaatag 4910

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>gb|AY355383.1| Rickettsia rickettsii surface antigen (sca2) gene, partial cds
          Length = 5501

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 514  cataattatattaagaatag 533
            ||||||||||||||||||||
Sbjct: 4977 cataattatattaagaatag 4996

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>gb|AY355382.1| Rickettsia rhipicephali surface antigen (sca2) gene, partial cds
          Length = 5581

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 514  cataattatattaagaatag 533
            ||||||||||||||||||||
Sbjct: 5053 cataattatattaagaatag 5072

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>gb|AY355381.1| Rickettsia parkeri surface antigen (sca2) gene, partial cds
          Length = 5441

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 514  cataattatattaagaatag 533
            ||||||||||||||||||||
Sbjct: 4915 cataattatattaagaatag 4934

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>gb|AY355380.1| Rickettsia montanensis surface antigen (sca2) gene, partial cds
          Length = 5462

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 514  cataattatattaagaatag 533
            ||||||||||||||||||||
Sbjct: 4937 cataattatattaagaatag 4956

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>gb|AY355378.1| Rickettsia aeschlimannii surface antigen (sca2) gene, partial cds
          Length = 5309

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 514  cataattatattaagaatag 533
            ||||||||||||||||||||
Sbjct: 4782 cataattatattaagaatag 4801

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>gb|AY355377.1| Rickettsia massiliae surface antigen (sca2) gene, partial cds
          Length = 5347

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 514  cataattatattaagaatag 533
            ||||||||||||||||||||
Sbjct: 4821 cataattatattaagaatag 4840

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>gb|AY355376.1| Rickettsia japonica surface antigen (sca2) gene, partial cds
          Length = 5438

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 514  cataattatattaagaatag 533
            ||||||||||||||||||||
Sbjct: 4915 cataattatattaagaatag 4934

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>gb|AY355369.1| Rickettsia africae surface antigen (sca2) gene, partial cds
          Length = 5563

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 514  cataattatattaagaatag 533
            ||||||||||||||||||||
Sbjct: 5043 cataattatattaagaatag 5062

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>gb|AY355368.1| Rickettsia honei surface antigen (sca2) gene, partial cds
          Length = 5150

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 514  cataattatattaagaatag 533
            ||||||||||||||||||||
Sbjct: 4624 cataattatattaagaatag 4643

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>gb|AE008578.1| Rickettsia conorii str. Malish 7, section 10 of 114 of the complete
            genome
          Length = 10238

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 514  cataattatattaagaatag 533
            ||||||||||||||||||||
Sbjct: 2475 cataattatattaagaatag 2456

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>gb|AC132595.3| Mus musculus BAC clone RP24-229G7 from chromosome 7, complete sequence
          Length = 155547

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 342    gcccagagagaattgcttcg 361
              ||||||||||||||||||||
Sbjct: 144887 gcccagagagaattgcttcg 144906

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>gb|AY970504.1| Rickettsia africae cell surface antigen Sca2 (sca2) gene, partial cds
          Length = 4398

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 514  cataattatattaagaatag 533
            ||||||||||||||||||||
Sbjct: 3853 cataattatattaagaatag 3872

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>emb|CR940306.3| M.truncatula DNA sequence from clone MTH2-10B11 on chromosome 3,
             complete sequence
          Length = 90977

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   tgcacgaaagaatcaacaag 181
             ||||||||||||||||||||
Sbjct: 59103 tgcacgaaagaatcaacaag 59084

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>gb|AC165968.3| Mus musculus BAC clone RP23-181K4 from chromosome 7, complete sequence
          Length = 190840

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 342    gcccagagagaattgcttcg 361
              ||||||||||||||||||||
Sbjct: 114037 gcccagagagaattgcttcg 114056

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>emb|CR380952.1| Candida glabrata strain CBS138 chromosome F complete sequence
          Length = 927101

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 649   gtatgtgttctcttctgtat 668
             ||||||||||||||||||||
Sbjct: 15381 gtatgtgttctcttctgtat 15400

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>emb|AL604063.4| Mouse DNA sequence from clone RP23-467J12 on chromosome 11, complete
              sequence
          Length = 146759

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 511    ttccataattatattaagaatagc 534
              ||||||| ||||||||||||||||
Sbjct: 116662 ttccatacttatattaagaatagc 116685

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>gb|AC025366.11| Homo sapiens chromosome 8, clone RP11-238I10, complete sequence
          Length = 157390

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   tgtccatcattatggtatca 328
             ||||||||||||||||||||
Sbjct: 75606 tgtccatcattatggtatca 75625

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>dbj|AK132089.1| Mus musculus 12 days embryo head cDNA, RIKEN full-length enriched
           library, clone:3021402E05 product:unclassifiable, full
           insert sequence
          Length = 1664

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 511 ttccataattatattaagaatagc 534
           ||||||| ||||||||||||||||
Sbjct: 703 ttccatacttatattaagaatagc 726

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>gb|AC159746.5| Mus musculus 6 BAC RP23-437F11 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 171039

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 370   atcctcaaccaattgagtga 389
             ||||||||||||||||||||
Sbjct: 88847 atcctcaaccaattgagtga 88828

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>gb|AC019067.9| Homo sapiens BAC clone RP11-171B14 from 2, complete sequence
          Length = 169928

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 162    tgcacgaaagaatcaacaagctta 185
              |||| |||||||||||||||||||
Sbjct: 144332 tgcaggaaagaatcaacaagctta 144355

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>dbj|BS000125.1| Pan troglodytes chromosome 22 clone:PTB-147B08, map 22, complete
              sequences
          Length = 220932

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 311    tccatcattatggtatcacc 330
              ||||||||||||||||||||
Sbjct: 192854 tccatcattatggtatcacc 192835

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>dbj|AP001730.1| Homo sapiens genomic DNA, chromosome 21q, section 74/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 311    tccatcattatggtatcacc 330
              ||||||||||||||||||||
Sbjct: 151331 tccatcattatggtatcacc 151312

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>emb|AL954841.10| Zebrafish DNA sequence from clone DKEY-3B8, complete sequence
          Length = 149277

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   caagcttatccacagcgcag 197
             ||||||||||||||||||||
Sbjct: 76326 caagcttatccacagcgcag 76307

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>emb|AL358339.2|CNS05TEA Human chromosome 14 DNA sequence BAC C-3172B5 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 87937

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 173   atcaacaagcttatccacag 192
             ||||||||||||||||||||
Sbjct: 38562 atcaacaagcttatccacag 38543

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>emb|AL512361.3|CNS07EFA Human chromosome 14 DNA sequence BAC R-326E7 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 158305

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   atcaacaagcttatccacag 192
             ||||||||||||||||||||
Sbjct: 25503 atcaacaagcttatccacag 25522

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>gb|AY695330.1| Cyanothece sp. WH 8901 isolate 2 polyketide synthase ketosynthase
           domain gene, partial cds
          Length = 677

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 499 acccttcacctcttccataa 518
           ||||||||||||||||||||
Sbjct: 460 acccttcacctcttccataa 441

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>dbj|AP000158.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone
             D47-S479, segment 10/16, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   tccatcattatggtatcacc 330
             ||||||||||||||||||||
Sbjct: 98748 tccatcattatggtatcacc 98729

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>dbj|AP000017.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 8/13
          Length = 100000

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   tccatcattatggtatcacc 330
             ||||||||||||||||||||
Sbjct: 33144 tccatcattatggtatcacc 33125

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>dbj|AP003693.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1762B7, complete
              sequence
          Length = 150581

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 309    tgtccatcattatggtatca 328
              ||||||||||||||||||||
Sbjct: 139598 tgtccatcattatggtatca 139617

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>dbj|AP001427.1| Homo sapiens genomic DNA, chromosome 21q22.2, clone:S611, LB7T-ERG
             region, complete sequence
          Length = 57892

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   tccatcattatggtatcacc 330
             ||||||||||||||||||||
Sbjct: 41920 tccatcattatggtatcacc 41901


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,872,939
Number of Sequences: 3902068
Number of extensions: 5872939
Number of successful extensions: 126821
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 126643
Number of HSP's gapped (non-prelim): 175
length of query: 686
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 663
effective length of database: 17,143,297,704
effective search space: 11366006377752
effective search space used: 11366006377752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result