ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6m01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1RLUD_VIBVU (Q8DEV0) Ribosomal large subunit pseudouridine syntha... 77 2e-14
2RLUD_VIBPA (Q87S65) Ribosomal large subunit pseudouridine syntha... 75 6e-14
3RLUD_VIBCH (Q9KU20) Ribosomal large subunit pseudouridine syntha... 74 2e-13
4RLUD_HAEIN (P44445) Ribosomal large subunit pseudouridine syntha... 72 6e-13
5YBC5_CHLVI (O50310) Hypothetical RNA pseudouridine synthase in b... 71 4e-12
6RLUD_PASMU (Q9CKA6) Ribosomal large subunit pseudouridine syntha... 68 1e-11
7RLUD_SALTY (P65836) Ribosomal large subunit pseudouridine syntha... 65 7e-11
8RLUD_SALTI (P65837) Ribosomal large subunit pseudouridine syntha... 65 7e-11
9YLYB_BACSU (Q45480) Hypothetical RNA pseudouridine synthase ylyB... 62 1e-10
10RLUD_HAEDU (Q9L7A7) Ribosomal large subunit pseudouridine syntha... 62 5e-10
11RLUD_SHIFL (P65835) Ribosomal large subunit pseudouridine syntha... 62 7e-10
12RLUD_ECOLI (P33643) Ribosomal large subunit pseudouridine syntha... 62 7e-10
13RLUD_ECOL6 (P65834) Ribosomal large subunit pseudouridine syntha... 62 7e-10
14RLUD_ECO57 (Q8X9F0) Ribosomal large subunit pseudouridine syntha... 62 7e-10
15RLUD_YERPE (Q8ZBV7) Ribosomal large subunit pseudouridine syntha... 58 9e-09
16RLUD_ZYMMO (P50513) Ribosomal large subunit pseudouridine syntha... 52 3e-08
17YMDA_CHLAU (Q45826) Hypothetical RNA pseudouridine synthase in m... 55 3e-08
18RLUD_NITEU (Q82WZ5) Ribosomal large subunit pseudouridine syntha... 54 2e-07
19RLUD_XANCP (Q8P682) Ribosomal large subunit pseudouridine syntha... 52 2e-07
20RLUD_PSEAE (P33640) Ribosomal large subunit pseudouridine syntha... 55 3e-07
21RLUD_XANAC (Q8PHN2) Ribosomal large subunit pseudouridine syntha... 51 3e-07
22RLUD_RALSO (Q8XYX8) Ribosomal large subunit pseudouridine syntha... 50 6e-07
23RLUD_NEIMA (Q9JVB6) Ribosomal large subunit pseudouridine syntha... 52 7e-07
24RLUD_BUCAP (Q8K9E9) Ribosomal large subunit pseudouridine syntha... 47 5e-06
25YJBO_BACSU (O31613) Hypothetical RNA pseudouridine synthase yjbO... 49 1e-05
26RLUD_BLOFL (P59838) Ribosomal large subunit pseudouridine syntha... 49 1e-05
27RLUD_NEIMB (Q9K0B0) Ribosomal large subunit pseudouridine syntha... 47 1e-05
28RLUD_XYLFT (Q87AR7) Ribosomal large subunit pseudouridine syntha... 47 2e-05
29RLUD_XYLFA (Q9PET9) Ribosomal large subunit pseudouridine syntha... 46 2e-05
30RLUC_ECO57 (Q8X8J3) Ribosomal large subunit pseudouridine syntha... 47 6e-05
31RLUD_BUCAI (P57481) Ribosomal large subunit pseudouridine syntha... 45 8e-05
32RLUC_VIBPA (Q87N15) Ribosomal large subunit pseudouridine syntha... 46 9e-05
33Y745_HELPJ (Q9ZL98) Hypothetical RNA pseudouridine synthase jhp_... 45 2e-04
34RLUC_SHIFL (P0AA40) Ribosomal large subunit pseudouridine syntha... 45 2e-04
35RLUC_ECOLI (P0AA39) Ribosomal large subunit pseudouridine syntha... 45 2e-04
36RLUC_ECOL6 (Q8FIP7) Ribosomal large subunit pseudouridine syntha... 45 2e-04
37RLUA_PASMU (Q9CK02) Ribosomal large subunit pseudouridine syntha... 44 4e-04
38RLUD_BUCBP (Q89AD9) Ribosomal large subunit pseudouridine syntha... 44 4e-04
39Y1567_MYCBO (P0A5T3) Hypothetical RNA pseudouridine synthase Mb1... 42 4e-04
40Y1540_MYCTU (P0A5T2) Hypothetical RNA pseudouridine synthase Rv1... 42 4e-04
41RLUC_VIBCH (Q9KQH0) Ribosomal large subunit pseudouridine syntha... 44 6e-04
42Y1629_SYNY3 (P74346) Hypothetical RNA pseudouridine synthase slr... 44 6e-04
43Y1758_AQUAE (O67638) Hypothetical RNA pseudouridine synthase aq_... 44 6e-04
44RLUC_PASMU (Q9CM51) Ribosomal large subunit pseudouridine syntha... 43 8e-04
45RLUC_SALTY (Q8ZQ16) Ribosomal large subunit pseudouridine syntha... 43 0.001
46RLUC_SALTI (Q8Z7J7) Ribosomal large subunit pseudouridine syntha... 43 0.001
47Y745_HELPY (O25441) Hypothetical RNA pseudouridine synthase HP07... 43 0.001
48RLUC_VIBVU (Q8D8G1) Ribosomal large subunit pseudouridine syntha... 42 0.002
49RLUC_HAEIN (P44433) Ribosomal large subunit pseudouridine syntha... 40 0.007
50Y1592_SYNY3 (P72970) Hypothetical RNA pseudouridine synthase slr... 40 0.007
51TRUC_ECO57 (Q8X6T6) tRNA pseudouridine synthase C (EC 5.4.99.-) ... 40 0.009
52RLUC_BUCAP (Q8K9J8) Ribosomal large subunit pseudouridine syntha... 39 0.011
53RLUC_YERPE (Q8ZFU1) Ribosomal large subunit pseudouridine syntha... 39 0.015
54TRUC_SHIFL (P0AA42) tRNA pseudouridine synthase C (EC 5.4.99.-) ... 39 0.015
55TRUC_ECOLI (P0AA41) tRNA pseudouridine synthase C (EC 5.4.99.-) ... 39 0.015
56TRUC_ECOL6 (Q8FEF9) tRNA pseudouridine synthase C (EC 5.4.99.-) ... 39 0.015
57RLUC_BUCAI (P57430) Ribosomal large subunit pseudouridine syntha... 39 0.015
58YHCT_BACSU (P54604) Hypothetical RNA pseudouridine synthase yhcT... 33 0.022
59RLUA_SALTI (Q8Z9J5) Ribosomal large subunit pseudouridine syntha... 37 0.057
60RLUC_RICCN (Q92IS6) Ribosomal large subunit pseudouridine syntha... 37 0.074
61RLUA_SALTY (Q8ZRV9) Ribosomal large subunit pseudouridine syntha... 36 0.097
62RLUA_HAEDU (P59831) Ribosomal large subunit pseudouridine syntha... 36 0.097
63RLUA_HAEIN (P44782) Ribosomal large subunit pseudouridine syntha... 35 0.17
64RLUD_BORBU (P70870) Ribosomal large subunit pseudouridine syntha... 35 0.17
65RLUC_HAEDU (P59835) Ribosomal large subunit pseudouridine syntha... 35 0.22
66RLUC_RICPR (Q9ZDR7) Ribosomal large subunit pseudouridine syntha... 35 0.22
67RLUA_VIBVU (Q8DCG0) Ribosomal large subunit pseudouridine syntha... 35 0.28
68RLUA_SHIFL (P0AA38) Ribosomal large subunit pseudouridine syntha... 35 0.28
69RLUA_ECOLI (P0AA37) Ribosomal large subunit pseudouridine syntha... 35 0.28
70RLUA_ECOL6 (Q8FL93) Ribosomal large subunit pseudouridine syntha... 35 0.28
71RLUA_ECO57 (Q8XA10) Ribosomal large subunit pseudouridine syntha... 35 0.28
72TRUC_SALTI (Q8Z439) tRNA pseudouridine synthase C (EC 5.4.99.-) ... 34 0.37
73TRUC_YERPE (Q8ZH72) tRNA pseudouridine synthase C (EC 5.4.99.-) ... 34 0.48
74TRUC_HAEDU (P59840) tRNA pseudouridine synthase C (EC 5.4.99.-) ... 33 0.82
75RLUA_VIBCH (Q9KP71) Ribosomal large subunit pseudouridine syntha... 33 0.82
76TRUC_PECCC (Q47417) tRNA pseudouridine synthase C (EC 5.4.99.-) ... 33 1.1
77TRUC_SALTY (Q8ZMD5) tRNA pseudouridine synthase C (EC 5.4.99.-) ... 33 1.1
78TRUC_PASMU (Q9CNF3) tRNA pseudouridine synthase C (EC 5.4.99.-) ... 32 1.4
79TRUC_VIBVU (Q8DBG5) tRNA pseudouridine synthase C (EC 5.4.99.-) ... 32 1.4
80RLUA_VIBPA (Q87LD3) Ribosomal large subunit pseudouridine syntha... 32 1.4
81I10R2_MOUSE (Q61190) Interleukin-10 receptor beta chain precurso... 32 1.4
82RLUA_YERPE (Q8ZIK1) Ribosomal large subunit pseudouridine syntha... 32 1.4
83VG48_SHV21 (Q01033) Hypothetical gene 48 protein 32 1.8
84RLUC_PSEAE (Q9HZM9) Ribosomal large subunit pseudouridine syntha... 32 2.4
85TRUC_VIBCH (Q9KTL4) tRNA pseudouridine synthase C (EC 5.4.99.-) ... 32 2.4
86Y956_HELPY (O25610) Hypothetical RNA pseudouridine synthase HP09... 31 3.1
87TRUC_VIBPA (Q87MD4) tRNA pseudouridine synthase C (EC 5.4.99.-) ... 31 3.1
88Y292_MYCPN (P75485) Hypothetical RNA pseudouridine synthase MG20... 31 3.1
89SAK1_SCHPO (P48383) Protein sak1 31 4.1
90YK27_CAEEL (O16686) Hypothetical protein K07E8.7 in chromosome IV 31 4.1
91YRM2_CAEEL (Q09600) Hypothetical RING finger protein R06F6.2 in ... 31 4.1
92Y956_HELPJ (Q9ZKP5) Hypothetical RNA pseudouridine synthase jhp_... 30 7.0
93Y505_ZYMMO (O66114) Hypothetical RNA pseudouridine synthase ZMO0... 27 7.5
94RLUC_BUCBP (Q89AH2) Ribosomal large subunit pseudouridine syntha... 30 9.1 
>RLUD_VIBVU (Q8DEV0) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 325

 Score = 77.4 bits (189), Expect(2) = 2e-14
 Identities = 39/93 (41%), Positives = 52/93 (55%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H  YL +PLLGD  YGG         R R P+    D++ ++   DR  LHA
Sbjct: 231 GRTHQIRVHMSYLQHPLLGDAAYGG---------RARIPAGASEDVTAMIRNFDRQALHA 281

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELRR 380
            +L F+HP +G+ +EF  P PDD  E+ + LRR
Sbjct: 282 VMLRFEHPITGEEMEFHAPVPDDMVELTETLRR 314



 Score = 21.6 bits (44), Expect(2) = 2e-14
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 680 VEWRLETGRTH 648
           +  RLETGRTH
Sbjct: 224 IRLRLETGRTH 234
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>RLUD_VIBPA (Q87S65) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 325

 Score = 75.5 bits (184), Expect(2) = 6e-14
 Identities = 39/95 (41%), Positives = 53/95 (55%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H  YL +PLLGD  YGG         R R P+    +L++++   DR  LHA
Sbjct: 231 GRTHQIRVHMSYLQHPLLGDTAYGG---------RARIPTGASQELTDMIRGFDRQALHA 281

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELRRVT 374
            +L F+HP +G+ LEF  P PDD   + + LR+ T
Sbjct: 282 VMLRFEHPITGEELEFHAPVPDDMVAMTEALRKDT 316



 Score = 21.6 bits (44), Expect(2) = 6e-14
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 680 VEWRLETGRTH 648
           +  RLETGRTH
Sbjct: 224 IRLRLETGRTH 234
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>RLUD_VIBCH (Q9KU20) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 324

 Score = 73.9 bits (180), Expect(2) = 2e-13
 Identities = 40/102 (39%), Positives = 52/102 (50%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H  YL +PLLGD  YGG         R R P     +L+ ++   DR  LHA
Sbjct: 231 GRTHQIRVHMAYLQHPLLGDTAYGG---------RARIPKGATEELTEMIRDFDRQALHA 281

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELRRVTPTNEGQD 353
            +L F+HP +G+ LEF  P PDD  E+   LR     N  ++
Sbjct: 282 VMLKFEHPVTGEELEFHAPVPDDMVEMTLALREDAKLNRTEE 323



 Score = 21.2 bits (43), Expect(2) = 2e-13
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 671 RLETGRTH 648
           RLETGRTH
Sbjct: 227 RLETGRTH 234
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>RLUD_HAEIN (P44445) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 324

 Score = 72.4 bits (176), Expect(2) = 6e-13
 Identities = 36/92 (39%), Positives = 50/92 (54%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H  ++ +PLLGD+TYGG         RPR P     D   ++    R  LHA
Sbjct: 230 GRTHQIRVHMAHIAHPLLGDQTYGG---------RPRPPKNASEDFMEVLRNFKRQALHA 280

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 383
            +L   HP +G+ +E+  P PDDF E+L+ L+
Sbjct: 281 VMLRLAHPITGEMMEWYAPLPDDFVELLNALK 312



 Score = 21.2 bits (43), Expect(2) = 6e-13
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 671 RLETGRTH 648
           RLETGRTH
Sbjct: 226 RLETGRTH 233
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>YBC5_CHLVI (O50310) Hypothetical RNA pseudouridine synthase in bchI 5'region|
           (EC 5.4.99.-) (RNA-uridine isomerase) (RNA
           pseudouridylate synthase)
          Length = 327

 Score = 70.9 bits (172), Expect = 4e-12
 Identities = 39/99 (39%), Positives = 54/99 (54%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H ++LG+ +LGDETYGG    TL        SK      NL+  + R  LHA
Sbjct: 234 GRTHQIRVHLQHLGHSILGDETYGGATPRTLPF------SKSEPFTRNLLELMSRQALHA 287

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELRRVTPTNE 362
             L F+ P +G+ L FS P P+D   VL+++R V   ++
Sbjct: 288 QTLRFRQPTTGEPLSFSAPLPEDMELVLEKIRTVMTASQ 326
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>RLUD_PASMU (Q9CKA6) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 324

 Score = 67.8 bits (164), Expect(2) = 1e-11
 Identities = 34/92 (36%), Positives = 49/92 (53%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H  ++ +PLLGD+TYGG         RPR P     +L   +    R  LHA
Sbjct: 230 GRTHQIRVHMAHIAHPLLGDQTYGG---------RPRPPKNASEELMQTLRDFKRQALHA 280

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 383
            +L   HP +G+ +E+  P P DF E+++ L+
Sbjct: 281 IMLRLAHPITGELMEWHAPLPTDFVELVEALK 312



 Score = 21.2 bits (43), Expect(2) = 1e-11
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 671 RLETGRTH 648
           RLETGRTH
Sbjct: 226 RLETGRTH 233
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>RLUD_SALTY (P65836) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 325

 Score = 65.5 bits (158), Expect(2) = 7e-11
 Identities = 33/92 (35%), Positives = 48/92 (52%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H  ++ +PL+GD+ YGG         RPR P     +  + + K DR  LHA
Sbjct: 230 GRTHQIRVHMAHITHPLVGDQVYGG---------RPRPPKGASEEFISTLRKFDRQALHA 280

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 383
            +L   HP SG  +E+  P P D  +++D +R
Sbjct: 281 TMLRLYHPVSGIEMEWHAPIPQDMVDLIDAMR 312



 Score = 21.2 bits (43), Expect(2) = 7e-11
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 671 RLETGRTH 648
           RLETGRTH
Sbjct: 226 RLETGRTH 233
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>RLUD_SALTI (P65837) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 325

 Score = 65.5 bits (158), Expect(2) = 7e-11
 Identities = 33/92 (35%), Positives = 48/92 (52%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H  ++ +PL+GD+ YGG         RPR P     +  + + K DR  LHA
Sbjct: 230 GRTHQIRVHMAHITHPLVGDQVYGG---------RPRPPKGASEEFISTLRKFDRQALHA 280

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 383
            +L   HP SG  +E+  P P D  +++D +R
Sbjct: 281 TMLRLYHPVSGIEMEWHAPIPQDMVDLIDAMR 312



 Score = 21.2 bits (43), Expect(2) = 7e-11
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 671 RLETGRTH 648
           RLETGRTH
Sbjct: 226 RLETGRTH 233
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>YLYB_BACSU (Q45480) Hypothetical RNA pseudouridine synthase ylyB (EC 5.4.99.-)|
           (RNA-uridine isomerase) (RNA pseudouridylate synthase)
          Length = 303

 Score = 61.6 bits (148), Expect(2) = 1e-10
 Identities = 34/93 (36%), Positives = 46/93 (49%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H KY+G PL GD  YG           PR    ++G             LHA
Sbjct: 231 GRTHQIRVHMKYIGFPLAGDPKYG-----------PRKTIDFNGQP-----------LHA 268

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELRR 380
            +LGF HP +G+ +EF  P P+D  E+++ LR+
Sbjct: 269 GVLGFDHPRTGEYVEFEAPLPEDMAELIENLRK 301



 Score = 23.9 bits (50), Expect(2) = 1e-10
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -2

Query: 683 LVEWRLETGRTH 648
           LVE +LETGRTH
Sbjct: 223 LVECQLETGRTH 234
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>RLUD_HAEDU (Q9L7A7) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 325

 Score = 62.4 bits (150), Expect(2) = 5e-10
 Identities = 32/92 (34%), Positives = 47/92 (51%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H  ++ +PLLGD+ YGG         RPR P         ++    R  LHA
Sbjct: 231 GRTHQIRVHMAHIAHPLLGDQLYGG---------RPRPPKGSSEAFLTVLRAFQRQALHA 281

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 383
            +L  +HP +G+ +E   P P DF E+++ L+
Sbjct: 282 TMLRLEHPINGELIECHAPLPADFVELIEALK 313



 Score = 21.2 bits (43), Expect(2) = 5e-10
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 671 RLETGRTH 648
           RLETGRTH
Sbjct: 227 RLETGRTH 234
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>RLUD_SHIFL (P65835) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 325

 Score = 62.0 bits (149), Expect(2) = 7e-10
 Identities = 33/92 (35%), Positives = 46/92 (50%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H  ++ +PL+GD  YGG         RPR P        + + K DR  LHA
Sbjct: 230 GRTHQIRVHMAHITHPLVGDPVYGG---------RPRPPKGASEAFISTLRKFDRQALHA 280

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 383
            +L   HP SG  +E+  P P D  E+++ +R
Sbjct: 281 TMLRLYHPISGIEMEWHAPIPQDMVELIEVMR 312



 Score = 21.2 bits (43), Expect(2) = 7e-10
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 671 RLETGRTH 648
           RLETGRTH
Sbjct: 226 RLETGRTH 233
to top
>RLUD_ECOLI (P33643) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 325

 Score = 62.0 bits (149), Expect(2) = 7e-10
 Identities = 33/92 (35%), Positives = 46/92 (50%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H  ++ +PL+GD  YGG         RPR P        + + K DR  LHA
Sbjct: 230 GRTHQIRVHMAHITHPLVGDPVYGG---------RPRPPKGASEAFISTLRKFDRQALHA 280

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 383
            +L   HP SG  +E+  P P D  E+++ +R
Sbjct: 281 TMLRLYHPISGIEMEWHAPIPQDMVELIEVMR 312



 Score = 21.2 bits (43), Expect(2) = 7e-10
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 671 RLETGRTH 648
           RLETGRTH
Sbjct: 226 RLETGRTH 233
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>RLUD_ECOL6 (P65834) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 325

 Score = 62.0 bits (149), Expect(2) = 7e-10
 Identities = 33/92 (35%), Positives = 46/92 (50%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H  ++ +PL+GD  YGG         RPR P        + + K DR  LHA
Sbjct: 230 GRTHQIRVHMAHITHPLVGDPVYGG---------RPRPPKGASEAFISTLRKFDRQALHA 280

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 383
            +L   HP SG  +E+  P P D  E+++ +R
Sbjct: 281 TMLRLYHPISGIEMEWHAPIPQDMVELIEVMR 312



 Score = 21.2 bits (43), Expect(2) = 7e-10
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 671 RLETGRTH 648
           RLETGRTH
Sbjct: 226 RLETGRTH 233
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>RLUD_ECO57 (Q8X9F0) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 325

 Score = 62.0 bits (149), Expect(2) = 7e-10
 Identities = 33/92 (35%), Positives = 46/92 (50%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H  ++ +PL+GD  YGG         RPR P        + + K DR  LHA
Sbjct: 230 GRTHQIRVHMAHITHPLVGDPVYGG---------RPRPPKGASEAFISTLRKFDRQALHA 280

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 383
            +L   HP SG  +E+  P P D  E+++ +R
Sbjct: 281 TMLRLYHPISGIEMEWHAPIPQDMVELIEVMR 312



 Score = 21.2 bits (43), Expect(2) = 7e-10
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 671 RLETGRTH 648
           RLETGRTH
Sbjct: 226 RLETGRTH 233
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>RLUD_YERPE (Q8ZBV7) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 325

 Score = 58.2 bits (139), Expect(2) = 9e-09
 Identities = 31/95 (32%), Positives = 46/95 (48%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H  ++ +PL+GD+ YGG         RPR P         ++   DR  LHA
Sbjct: 231 GRTHQIRVHMSHINHPLVGDQLYGG---------RPRPPKGASDSFIAILRGFDRQALHA 281

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELRRVT 374
            +L   HP  G  +E+    P+D  E+++ L+  T
Sbjct: 282 TMLRLYHPIRGIQMEWHAALPEDMVELINALKADT 316



 Score = 21.2 bits (43), Expect(2) = 9e-09
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 671 RLETGRTH 648
           RLETGRTH
Sbjct: 227 RLETGRTH 234
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>RLUD_ZYMMO (P50513) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 317

 Score = 51.6 bits (122), Expect(2) = 3e-08
 Identities = 31/83 (37%), Positives = 39/83 (46%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   Q+R H   +G+ LLGD  YG            R+   +H  L +L     R  LHA
Sbjct: 235 GRTHQVRVHMSSIGHSLLGDPVYG------------RSKKAHHALLQSLA--FQRQALHA 280

Query: 478 ALLGFKHPHSGKALEFSCPPPDD 410
           A LGF HP SGK ++F    P D
Sbjct: 281 AHLGFIHPISGKQVDFDAEMPQD 303



 Score = 25.8 bits (55), Expect(2) = 3e-08
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = -2

Query: 689 SALVEWRLETGRTH 648
           ++L+E RLETGRTH
Sbjct: 225 ASLIECRLETGRTH 238
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>YMDA_CHLAU (Q45826) Hypothetical RNA pseudouridine synthase in mdh 5'region|
           (EC 5.4.99.-) (RNA-uridine isomerase) (RNA
           pseudouridylate synthase) (ORFA) (Fragment)
          Length = 253

 Score = 54.7 bits (130), Expect(2) = 3e-08
 Identities = 35/92 (38%), Positives = 44/92 (47%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H ++LG P++GD  YG              P + H  LS       R  LHA
Sbjct: 177 GRTHQIRVHLRHLGYPIVGDPVYG--------------PRRSHLHLS-------RQFLHA 215

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 383
           A LG  HP SG+  EF+ P P D   VL +L+
Sbjct: 216 AYLGLVHPRSGRWQEFTAPLPADLQIVLRQLQ 247



 Score = 22.7 bits (47), Expect(2) = 3e-08
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -2

Query: 686 ALVEWRLETGRTH 648
           +L+E +LETGRTH
Sbjct: 168 SLLEVQLETGRTH 180
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>RLUD_NITEU (Q82WZ5) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 344

 Score = 53.5 bits (127), Expect(2) = 2e-07
 Identities = 33/94 (35%), Positives = 44/94 (46%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H   +G+PL GD  YG T            PS      ++ V ++ R  LHA
Sbjct: 256 GRTHQIRVHLLSIGHPLAGDPVYGRTSP---------DPST-----ADAVVRLPRQALHA 301

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELRRV 377
             L   HPHSG+ L +  P PDD   +L  +R +
Sbjct: 302 WQLELTHPHSGQILLWESPLPDDMAALLQAIRNL 335



 Score = 21.6 bits (44), Expect(2) = 2e-07
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 689 SALVEWRLETGRTH 648
           S L+   LETGRTH
Sbjct: 246 STLLHCSLETGRTH 259
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>RLUD_XANCP (Q8P682) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 331

 Score = 52.4 bits (124), Expect(2) = 2e-07
 Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKI---DRPC 488
           G   QIR H  +L +P++GD  YGG      +L  P+      G    LV+++    R  
Sbjct: 237 GRTHQIRVHMAHLKSPIVGDPLYGG------ALKLPK------GATDTLVAELRGFKRQA 284

Query: 487 LHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELRRVTPTNEGQDSDNAAQV 332
           LHA  L F HP SG+ +  S P P+D   ++  LR        +DS  AA++
Sbjct: 285 LHAETLEFLHPVSGEPIRASAPVPEDLQRLMSALR--------EDSARAAEL 328



 Score = 22.7 bits (47), Expect(2) = 2e-07
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -2

Query: 680 VEWRLETGRTH 648
           +E RLETGRTH
Sbjct: 230 LECRLETGRTH 240
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>RLUD_PSEAE (P33640) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 320

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 32/93 (34%), Positives = 44/93 (47%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H  ++G PL+GD  YGG         R R P      L   + +  R  LHA
Sbjct: 230 GRTHQIRVHMSHIGYPLVGDPVYGG---------RFRIPPVASQTLVQTLREFPRQALHA 280

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELRR 380
             L   HP +G  +++  P P+DF  +L  LR+
Sbjct: 281 RFLELDHPATGVRMKWESPLPEDFLWLLSLLRQ 313
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>RLUD_XANAC (Q8PHN2) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 331

 Score = 51.2 bits (121), Expect(2) = 3e-07
 Identities = 34/109 (31%), Positives = 49/109 (44%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H  +L +P++GD  YGG   +         P     +L + +    R  LHA
Sbjct: 237 GRTHQIRVHMAHLKSPIVGDPLYGGALKL---------PKGATDELVHELRTFKRQALHA 287

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELRRVTPTNEGQDSDNAAQV 332
             L F HP SG+ +  S P P D   ++  LR        +DS  AA++
Sbjct: 288 ETLEFLHPVSGEPVRASAPVPADLQRLMTVLR--------EDSARAAEL 328



 Score = 22.7 bits (47), Expect(2) = 3e-07
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -2

Query: 680 VEWRLETGRTH 648
           +E RLETGRTH
Sbjct: 230 LECRLETGRTH 240
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>RLUD_RALSO (Q8XYX8) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 358

 Score = 50.1 bits (118), Expect(2) = 6e-07
 Identities = 33/91 (36%), Positives = 46/91 (50%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H +  G+PLLGD  Y  T++      RP+T        + L +   R  LHA
Sbjct: 269 GRTHQIRVHFESEGHPLLGDPVY--TRNFRRG--RPQTIK------APLPAPFARQALHA 318

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDEL 386
             LG  HP SG+++ +    PDD  E++D L
Sbjct: 319 VRLGLVHPASGQSVHWHAGVPDDLAELMDAL 349



 Score = 23.1 bits (48), Expect(2) = 6e-07
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -2

Query: 686 ALVEWRLETGRTH 648
           +LV+ +LETGRTH
Sbjct: 260 SLVQCQLETGRTH 272
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>RLUD_NEIMA (Q9JVB6) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 374

 Score = 51.6 bits (122), Expect(2) = 7e-07
 Identities = 35/94 (37%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGD-LSNLVSKID-RPCL 485
           G   QIR H +   +PL GD  YG           PR P    GD +   V  +  R  L
Sbjct: 253 GRTHQIRVHMREANHPLAGDPVYGN----------PRHPC---GDTVKEAVKSLGARQAL 299

Query: 484 HAALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 383
           HA  L F HP SG+ + F  P PDD   +L  LR
Sbjct: 300 HAYRLSFTHPESGETVSFEAPIPDDIYHLLSVLR 333



 Score = 21.2 bits (43), Expect(2) = 7e-07
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 680 VEWRLETGRTH 648
           +E  LETGRTH
Sbjct: 246 IECSLETGRTH 256
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>RLUD_BUCAP (Q8K9E9) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 315

 Score = 47.0 bits (110), Expect(2) = 5e-06
 Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKID--RPCL 485
           G   QIR H  ++G PLLGD  YGG                Y  +  N+  K +  R  L
Sbjct: 231 GRTHQIRVHMLHIGYPLLGDPLYGGID----------YGCNYFQENRNIYRKFNLFRQAL 280

Query: 484 HAALLGFKHPHSGKALEFSCPPPDDFTEVLDELRR 380
           HA  + F HP + K + +S   P D  ++L  L++
Sbjct: 281 HADYIEFIHPFTQKVMSWSASLPQDMKDILLYLKK 315



 Score = 23.1 bits (48), Expect(2) = 5e-06
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -2

Query: 680 VEWRLETGRTH 648
           V +RLETGRTH
Sbjct: 224 VSFRLETGRTH 234
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>YJBO_BACSU (O31613) Hypothetical RNA pseudouridine synthase yjbO (EC 5.4.99.-)|
           (RNA-uridine isomerase) (RNA pseudouridylate synthase)
          Length = 283

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 28/88 (31%), Positives = 39/88 (44%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H  YLG+PL GD  YGGT+                        +I R  LH+
Sbjct: 214 GRTHQIRVHMSYLGHPLCGDTLYGGTRQ-----------------------EIGRQALHS 250

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVL 395
             L F HP + + + F  P P D ++++
Sbjct: 251 EHLSFIHPLTQENMRFHAPLPQDMSKLI 278
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>RLUD_BLOFL (P59838) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 321

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 27/95 (28%), Positives = 47/95 (49%)
 Frame = -3

Query: 664 RQGALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCL 485
           + G   QIR H  Y+ +PL+GD+ Y G  S+           K   +L+N +   +R  L
Sbjct: 233 KTGRTHQIRVHMAYINHPLVGDQKYKGNFSVF-------DIKKMSDELNNYLLDFNRQAL 285

Query: 484 HAALLGFKHPHSGKALEFSCPPPDDFTEVLDELRR 380
           HA  L   HP +   ++++ P P D  +++  L++
Sbjct: 286 HACTLQLLHPITQVQMKWNAPLPQDILQLIAILKK 320
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>RLUD_NEIMB (Q9K0B0) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 374

 Score = 47.4 bits (111), Expect(2) = 1e-05
 Identities = 33/94 (35%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGD-LSNLVSKID-RPCL 485
           G   QIR H +   +PL  D  YG           PR P    GD +   V  +  R  L
Sbjct: 253 GRTHQIRVHMREANHPLAADPVYGN----------PRHPC---GDTVKEAVKSLGARQAL 299

Query: 484 HAALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 383
           HA  L F HP SG+ + F  P P+D   +L  LR
Sbjct: 300 HAYRLSFTHPESGETVSFEAPIPNDIYHLLSVLR 333



 Score = 21.2 bits (43), Expect(2) = 1e-05
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 680 VEWRLETGRTH 648
           +E  LETGRTH
Sbjct: 246 IECSLETGRTH 256
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>RLUD_XYLFT (Q87AR7) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 331

 Score = 46.6 bits (109), Expect(2) = 2e-05
 Identities = 28/92 (30%), Positives = 41/92 (44%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H  +L +P++GD  YGG+  +         P      L  ++    R  LHA
Sbjct: 237 GRTHQIRVHMAHLRHPIVGDRLYGGSLKL---------PKGGTDALVAMLRGFKRQALHA 287

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 383
            +L F HP     +    P P+D  ++L  LR
Sbjct: 288 EVLEFLHPVRALPVRIVAPVPEDLCQLLAALR 319



 Score = 21.6 bits (44), Expect(2) = 2e-05
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 680 VEWRLETGRTH 648
           +E RL+TGRTH
Sbjct: 230 LECRLDTGRTH 240
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>RLUD_XYLFA (Q9PET9) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 331

 Score = 46.2 bits (108), Expect(2) = 2e-05
 Identities = 28/92 (30%), Positives = 41/92 (44%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H  +L +P++GD  YGG+  +         P      L  ++    R  LHA
Sbjct: 237 GRTHQIRVHMAHLRHPIVGDRLYGGSLKL---------PKVGTDALVVMLRGFKRQALHA 287

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 383
            +L F HP     +    P P+D  ++L  LR
Sbjct: 288 EVLEFLHPVGALPVRIVAPVPEDLCQLLAVLR 319



 Score = 21.6 bits (44), Expect(2) = 2e-05
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 680 VEWRLETGRTH 648
           +E RL+TGRTH
Sbjct: 230 LECRLDTGRTH 240
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>RLUC_ECO57 (Q8X8J3) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 319

 Score = 47.0 bits (110), Expect = 6e-05
 Identities = 27/92 (29%), Positives = 41/92 (44%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H +Y G+P+  D+ YG  +              +   L+   + ++R  LHA
Sbjct: 239 GRTHQIRVHTQYAGHPIAFDDRYGDRE--------------FDRQLTEAGTGLNRLFLHA 284

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 383
           A L F HP +G+ +    P  D     L +LR
Sbjct: 285 AALKFTHPGTGEVMRIEAPMDDGLKRCLQKLR 316
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>RLUD_BUCAI (P57481) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 312

 Score = 44.7 bits (104), Expect(2) = 8e-05
 Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDL-SNLVSKIDRPCLH 482
           G   QIR H  ++  PL+GD  Y G K            S Y  D  +N + K  R  LH
Sbjct: 231 GRTHQIRVHMLHIKYPLVGDPCYSGFKIQ----------SNYRKDKKTNKIYKFPRQALH 280

Query: 481 AALLGFKHPHSGKALEFSCPPPDDFTEVL 395
           A  L   HP     + ++ P P D  E+L
Sbjct: 281 ANHLSLHHPIKKNVMSWTVPLPQDIQELL 309



 Score = 21.2 bits (43), Expect(2) = 8e-05
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 671 RLETGRTH 648
           RLETGRTH
Sbjct: 227 RLETGRTH 234
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>RLUC_VIBPA (Q87N15) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 315

 Score = 46.2 bits (108), Expect = 9e-05
 Identities = 30/93 (32%), Positives = 43/93 (46%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H +Y G+P+  D+ YG            R    Y G L      +DR  LHA
Sbjct: 237 GRTHQIRVHTQYTGHPIAWDDRYGD-----------RRFDAYTGQLG-----LDRLFLHA 280

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELRR 380
           A + F+HP + + +E + P      +VL  LR+
Sbjct: 281 ANIKFQHPSNDEWMEINAPMESKLEKVLVGLRK 313
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>Y745_HELPJ (Q9ZL98) Hypothetical RNA pseudouridine synthase jhp_0682 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 327

 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKID-RPCLH 482
           G   QIRAH +YL   ++GD  YG                     L+ ++SK + R  LH
Sbjct: 235 GRTHQIRAHLEYLNRHIIGDNLYG---------------------LNGVLSKEEIRIMLH 273

Query: 481 AALLGFKHPHSGKALEFSCPPPDDFTEVLDEL 386
           A L+ FKHP S + L F  P   D  E L ++
Sbjct: 274 AYLIEFKHPRSEQKLRFKVPLLKDMLEYLKKV 305
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>RLUC_SHIFL (P0AA40) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 319

 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 26/92 (28%), Positives = 41/92 (44%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H +Y G+P+  D+ YG  +              +   L+   + ++R  LHA
Sbjct: 239 GRTHQIRVHTQYAGHPIAFDDRYGDRE--------------FDRQLTEAGTGLNRLFLHA 284

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 383
           A L F HP +G+ +    P  +     L +LR
Sbjct: 285 AALKFTHPGTGEVMRIEAPMDEGLKRCLQKLR 316
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>RLUC_ECOLI (P0AA39) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 319

 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 26/92 (28%), Positives = 41/92 (44%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H +Y G+P+  D+ YG  +              +   L+   + ++R  LHA
Sbjct: 239 GRTHQIRVHTQYAGHPIAFDDRYGDRE--------------FDRQLTEAGTGLNRLFLHA 284

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 383
           A L F HP +G+ +    P  +     L +LR
Sbjct: 285 AALKFTHPGTGEVMRIEAPMDEGLKRCLQKLR 316
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>RLUC_ECOL6 (Q8FIP7) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 319

 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 26/92 (28%), Positives = 41/92 (44%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H +Y G+P+  D+ YG  +              +   L+   + ++R  LHA
Sbjct: 239 GRTHQIRVHTQYAGHPIAFDDRYGDRE--------------FDRQLTEAGTGLNRLFLHA 284

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 383
           A L F HP +G+ +    P  +     L +LR
Sbjct: 285 AALKFTHPGTGEVMRIEAPMDEGLKRCLQKLR 316
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>RLUA_PASMU (Q9CK02) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 219

 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 27/80 (33%), Positives = 36/80 (45%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   Q+R H   LG+P+LGD+ Y   ++  LS                      R CLHA
Sbjct: 159 GRSHQLRLHMLALGHPILGDKFYAPPQAKALS---------------------PRLCLHA 197

Query: 478 ALLGFKHPHSGKALEFSCPP 419
             L F+HP + + L FS PP
Sbjct: 198 EQLAFRHPITQEWLSFSAPP 217
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>RLUD_BUCBP (Q89AD9) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 317

 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGT----KSMTLSLLRPRTPSKYHGDLSNLVSKIDRP 491
           G   QIR H  Y+  PL+GD+TYG      K+++L+LL               V K  R 
Sbjct: 232 GRTHQIRTHMLYINFPLVGDKTYGNKFKFYKNISLTLLEQ-------------VKKFPRQ 278

Query: 490 CLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELRR 380
            LHA+ L   HP +   +E++   P D   ++  L +
Sbjct: 279 ALHASRLCLYHPVTKHLMEWNSTLPRDMLNLIALLNK 315
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>Y1567_MYCBO (P0A5T3) Hypothetical RNA pseudouridine synthase Mb1567 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 308

 Score = 42.0 bits (97), Expect(2) = 4e-04
 Identities = 29/92 (31%), Positives = 34/92 (36%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H   L +P  GD  YG    +   L                   +DR  LHA
Sbjct: 232 GRTHQIRVHFAALHHPCCGDLVYGADPKLAKRL------------------GLDRQWLHA 273

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 383
             L F HP  G+ +E   P P D    L  LR
Sbjct: 274 RSLAFAHPADGRRVEIVSPYPADLQHALKILR 305



 Score = 21.6 bits (44), Expect(2) = 4e-04
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 689 SALVEWRLETGRTH 648
           ++L++  LETGRTH
Sbjct: 222 ASLLDVHLETGRTH 235
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>Y1540_MYCTU (P0A5T2) Hypothetical RNA pseudouridine synthase Rv1540/MT1592 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 308

 Score = 42.0 bits (97), Expect(2) = 4e-04
 Identities = 29/92 (31%), Positives = 34/92 (36%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H   L +P  GD  YG    +   L                   +DR  LHA
Sbjct: 232 GRTHQIRVHFAALHHPCCGDLVYGADPKLAKRL------------------GLDRQWLHA 273

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 383
             L F HP  G+ +E   P P D    L  LR
Sbjct: 274 RSLAFAHPADGRRVEIVSPYPADLQHALKILR 305



 Score = 21.6 bits (44), Expect(2) = 4e-04
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 689 SALVEWRLETGRTH 648
           ++L++  LETGRTH
Sbjct: 222 ASLLDVHLETGRTH 235
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>RLUC_VIBCH (Q9KQH0) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 315

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 28/93 (30%), Positives = 40/93 (43%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H +Y+G+P+  D+ YG  +                 D       I+R  LHA
Sbjct: 238 GRTHQIRVHTQYMGHPIAWDDRYGDRRF----------------DAYTAQFGIERLFLHA 281

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELRR 380
           A + F HP S K LE   P      + L ++R+
Sbjct: 282 ANIQFVHPASEKKLEIHAPLEAHLEQALTKMRQ 314
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>Y1629_SYNY3 (P74346) Hypothetical RNA pseudouridine synthase slr1629 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 327

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 31/104 (29%), Positives = 44/104 (42%)
 Frame = -3

Query: 682 W*SGDWRQGALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSK 503
           W       G   QIR H+K +G+PL+GD  Y    S+ ++L     P +           
Sbjct: 244 WLEFQLETGRTHQIRVHSKQMGHPLVGDNLYTSPGSVNVNL-----PGQ----------- 287

Query: 502 IDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELRRVTP 371
                LHA  L   HP SG+ +    P P  F ++L  LR+  P
Sbjct: 288 ----ALHAHQLSLIHPVSGEIITAIAPMPAHFEKLLVYLRQRIP 327
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>Y1758_AQUAE (O67638) Hypothetical RNA pseudouridine synthase aq_1758 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 316

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 30/96 (31%), Positives = 41/96 (42%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H   +G+P+LGD TYG   S       P+      G+ + L+         A
Sbjct: 235 GRTHQIRVHFASIGHPVLGDRTYGFKSSSV-----PKELLSLMGECNMLI---------A 280

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELRRVTP 371
             LGF HP  G+ + F    P+ F  V   L   +P
Sbjct: 281 YHLGFYHPTKGEWMVFEIEEPETFKSVYSWLEEHSP 316
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>RLUC_PASMU (Q9CM51) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 326

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 27/98 (27%), Positives = 41/98 (41%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H +Y G+P+  D+ YG                  H D       + R  LHA
Sbjct: 245 GRTHQIRVHTQYAGHPIALDDKYGDK----------------HFDEQMTQLGLTRLFLHA 288

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELRRVTPTN 365
             + F+HP +G+ L  + P   +  ++L  LR    +N
Sbjct: 289 FSIRFEHPKTGETLRINAPLDPEMKKILGALREQKSSN 326
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>RLUC_SALTY (Q8ZQ16) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 319

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 26/92 (28%), Positives = 39/92 (42%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H +Y G+P+  D+ YG  +              +   L+   + + R  LHA
Sbjct: 239 GRTHQIRVHTQYAGHPIAFDDRYGDRE--------------FDQQLTEAGTGLKRLFLHA 284

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 383
           A L F HP +G+ +    P  +     L  LR
Sbjct: 285 AALKFTHPGTGEVMRIEAPMDNALKRCLQVLR 316
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>RLUC_SALTI (Q8Z7J7) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 319

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 26/92 (28%), Positives = 38/92 (41%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H +Y G+P+  D+ YG  +              +   L+   + + R  LHA
Sbjct: 239 GRTHQIRVHTQYAGHPIAFDDRYGDRE--------------FDQQLTEAGTGLKRLFLHA 284

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 383
           A L F HP +G  +    P        L+ LR
Sbjct: 285 AALKFTHPGTGDVMRIEAPMDKQLKRCLEVLR 316
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>Y745_HELPY (O25441) Hypothetical RNA pseudouridine synthase HP0745 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 327

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKID-RPCLH 482
           G   QIRAH +YL   ++GD  YG                     L+  + K + R  LH
Sbjct: 235 GRTHQIRAHLEYLNRHIIGDNLYG---------------------LNGALPKEEIRIMLH 273

Query: 481 AALLGFKHPHSGKALEFSCPPPDDFTEVLDEL 386
           A L+ FKHP S + L F  P   D  E L ++
Sbjct: 274 AYLIEFKHPRSEQKLRFKVPLLKDMLEYLKKV 305
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>RLUC_VIBVU (Q8D8G1) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 315

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 26/92 (28%), Positives = 42/92 (45%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H +Y G+P+  D+ YG  +    +          HG        ++R  LHA
Sbjct: 237 GRTHQIRVHTQYSGHPIAWDDRYGDRRFDAYTA--------QHG--------LNRLFLHA 280

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 383
           A + F HP + + +E + P  +   +V+  LR
Sbjct: 281 ANIRFTHPATEQPMEINAPMGEQLEKVVQSLR 312
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>RLUC_HAEIN (P44433) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 322

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 26/92 (28%), Positives = 41/92 (44%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H +Y G+P+  D+ YG            +   K   +L      ++R  LHA
Sbjct: 244 GRTHQIRVHTQYAGHPIALDDKYGD-----------KDFDKQMNELG-----LNRLFLHA 287

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 383
             + F+HP +G+ L F+         +L +LR
Sbjct: 288 FSIRFEHPKNGETLRFNASLDHQMKAILQKLR 319
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>Y1592_SYNY3 (P72970) Hypothetical RNA pseudouridine synthase slr1592 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 291

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
 Frame = -3

Query: 682 W*SGDWRQGALTQIRAHAKYLGNPLLGDETYG-GTKSMTLSLLRPRTPSKYHGDLSNLVS 506
           W   + R G   QIR H   LG PLLGD  YG G   +     RP               
Sbjct: 199 WLEVEIRTGRPHQIRIHLASLGYPLLGDRLYGPGGVPINCRTARPSDGGY---------- 248

Query: 505 KIDRPCLHAALLGFKHPHSGKALEFSCPPPDD 410
                 LH+  LGF H H+ +A++ + P P +
Sbjct: 249 -----TLHSYQLGFLHLHTQQAIKLTAPLPPE 275
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>TRUC_ECO57 (Q8X6T6) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 260

 Score = 39.7 bits (91), Expect = 0.009
 Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
 Frame = -3

Query: 664 RQGALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCL 485
           + G   Q+R H  +L +P++GD  +G        L + R+ +++ G        + R  L
Sbjct: 157 KTGRKHQLRRHLAHLRHPIIGDSKHG-------DLRQNRSGAEHFG--------LQRLML 201

Query: 484 HAALLGFKHPHSGKALEFSCPPPDDFTEVLDEL--RRVTPTNE--------GQDSDNAA 338
           HA+ L   HP +G+ L       D + + L +   R + P NE        GQD + ++
Sbjct: 202 HASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLLPENERVEFSAPSGQDGERSS 260
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>RLUC_BUCAP (Q8K9J8) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 314

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 26/93 (27%), Positives = 41/93 (44%)
 Frame = -3

Query: 664 RQGALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCL 485
           + G   QIR H  + G+P+L D+ YG  + +  ++                 +KI+R  L
Sbjct: 236 KTGRTHQIRVHTLHAGHPILFDKRYG-KRDLDCNIKNK--------------TKINRLLL 280

Query: 484 HAALLGFKHPHSGKALEFSCPPPDDFTEVLDEL 386
           HA  + F HP +GK +    P    F   L+ L
Sbjct: 281 HATSINFIHPETGKKMHIVAPLDVYFKNYLNTL 313
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>RLUC_YERPE (Q8ZFU1) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 320

 Score = 38.9 bits (89), Expect = 0.015
 Identities = 26/93 (27%), Positives = 40/93 (43%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR HA + G+P+  D+ YG  +                 D     + + R  LHA
Sbjct: 239 GRTHQIRVHALHAGHPIAFDDRYGYREF----------------DQQLQGTGLHRLFLHA 282

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELRR 380
           A L F+HP++G+ +    P  +     L  LR+
Sbjct: 283 AALRFEHPNTGETMRIEAPLDNQLRHCLLALRK 315
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>TRUC_SHIFL (P0AA42) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 260

 Score = 38.9 bits (89), Expect = 0.015
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
 Frame = -3

Query: 664 RQGALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCL 485
           + G   Q+R H  +L +P++GD  +G        L + R+ +++ G        + R  L
Sbjct: 157 KTGRKHQLRRHLAHLRHPIIGDSKHG-------DLRQNRSGAEHFG--------LQRLML 201

Query: 484 HAALLGFKHPHSGKALEFSCPPPDDFTEVLDEL--RRVTPTNE 362
           HA+ L   HP +G+ L       D + + L +   R + P NE
Sbjct: 202 HASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLLPENE 244
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>TRUC_ECOLI (P0AA41) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 260

 Score = 38.9 bits (89), Expect = 0.015
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
 Frame = -3

Query: 664 RQGALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCL 485
           + G   Q+R H  +L +P++GD  +G        L + R+ +++ G        + R  L
Sbjct: 157 KTGRKHQLRRHLAHLRHPIIGDSKHG-------DLRQNRSGAEHFG--------LQRLML 201

Query: 484 HAALLGFKHPHSGKALEFSCPPPDDFTEVLDEL--RRVTPTNE 362
           HA+ L   HP +G+ L       D + + L +   R + P NE
Sbjct: 202 HASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLLPENE 244
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>TRUC_ECOL6 (Q8FEF9) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 260

 Score = 38.9 bits (89), Expect = 0.015
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
 Frame = -3

Query: 664 RQGALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCL 485
           + G   Q+R H  +L +P++GD  +G        L + R+ +++ G        + R  L
Sbjct: 157 KTGRKHQLRRHLAHLRHPIIGDSKHG-------DLRQNRSGAEHFG--------LQRLML 201

Query: 484 HAALLGFKHPHSGKALEFSCPPPDDFTEVLDEL--RRVTPTNE 362
           HA+ L   HP +G+ L       D + + L +   R + P NE
Sbjct: 202 HASQLSLTHPFTGEPLAIHAGLDDTWMQALSQFGWRGLLPENE 244
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>RLUC_BUCAI (P57430) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 314

 Score = 38.9 bits (89), Expect = 0.015
 Identities = 26/93 (27%), Positives = 41/93 (44%)
 Frame = -3

Query: 664 RQGALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCL 485
           + G   QIR HA + G+P+  D+ YG               +    D+ N   KI+R  L
Sbjct: 236 KTGRTHQIRVHALHAGHPIFFDKRYG--------------KNDLDADIKN-NHKINRLLL 280

Query: 484 HAALLGFKHPHSGKALEFSCPPPDDFTEVLDEL 386
           H++ + F HP +G  +    P   DF   L+ +
Sbjct: 281 HSSGVHFIHPKNGNKIYIKAPLDIDFQNYLNTI 313
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>YHCT_BACSU (P54604) Hypothetical RNA pseudouridine synthase yhcT (EC 5.4.99.-)|
           (RNA-uridine isomerase) (RNA pseudouridylate synthase)
          Length = 302

 Score = 33.5 bits (75), Expect(2) = 0.022
 Identities = 23/83 (27%), Positives = 31/83 (37%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H   LG+PL GD  YGG   +                       ++R  LHA
Sbjct: 233 GRTHQIRVHLASLGHPLTGDSLYGGGSKL-----------------------LNRQALHA 269

Query: 478 ALLGFKHPHSGKALEFSCPPPDD 410
             +   HP + + +    P P D
Sbjct: 270 NKVQAVHPITDELIVAEAPFPAD 292



 Score = 23.9 bits (50), Expect(2) = 0.022
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -2

Query: 686 ALVEWRLETGRTH 648
           +LVE  LETGRTH
Sbjct: 224 SLVELELETGRTH 236
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>RLUA_SALTI (Q8Z9J5) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 218

 Score = 37.0 bits (84), Expect = 0.057
 Identities = 23/79 (29%), Positives = 35/79 (44%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   Q+R H   LG+P+LGD+ Y   ++++L+   PR                    LHA
Sbjct: 158 GRSHQLRVHMLALGHPILGDQFYASPEALSLA---PRLQ------------------LHA 196

Query: 478 ALLGFKHPHSGKALEFSCP 422
            +L   HP  G ++ F  P
Sbjct: 197 EMLTITHPAYGNSMTFKVP 215
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>RLUC_RICCN (Q92IS6) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 303

 Score = 36.6 bits (83), Expect = 0.074
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLS 563
           G + Q+R HAK LG P+LGD+ YG  + M  S
Sbjct: 236 GRMHQLRLHAKLLGCPILGDDKYGNKEIMPYS 267
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>RLUA_SALTY (Q8ZRV9) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 218

 Score = 36.2 bits (82), Expect = 0.097
 Identities = 23/79 (29%), Positives = 34/79 (43%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   Q+R H   LG+P+LGD  Y   ++++L+   PR                    LHA
Sbjct: 158 GRSHQLRVHMLALGHPILGDRFYASPEALSLA---PRLQ------------------LHA 196

Query: 478 ALLGFKHPHSGKALEFSCP 422
            +L   HP  G ++ F  P
Sbjct: 197 EMLTITHPAYGNSMTFKVP 215
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>RLUA_HAEDU (P59831) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 222

 Score = 36.2 bits (82), Expect = 0.097
 Identities = 22/80 (27%), Positives = 34/80 (42%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   Q+R H+  LG+P++GD+ Y    + +L+                      R CLHA
Sbjct: 162 GRSHQLRVHSLALGHPIIGDKFYANPLAKSLA---------------------PRLCLHA 200

Query: 478 ALLGFKHPHSGKALEFSCPP 419
             L   HP S + + F+  P
Sbjct: 201 ESLTIAHPISAELMTFNTEP 220
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>RLUA_HAEIN (P44782) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 219

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 22/77 (28%), Positives = 33/77 (42%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   Q+R H   LG+P+LGD+ Y   ++  +S                      R CLHA
Sbjct: 159 GRSHQLRLHMLALGHPILGDKFYSHPQAKVMS---------------------PRLCLHA 197

Query: 478 ALLGFKHPHSGKALEFS 428
             L   HP +G+ + F+
Sbjct: 198 EELTITHPITGETMTFN 214
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>RLUD_BORBU (P70870) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 326

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -3

Query: 664 RQGALTQIRAHAKYLGNPLLGDETY----GGTKSMTLSL 560
           + G   Q+R H KYL  P+LGDE Y    G  K +TL L
Sbjct: 236 KTGRTHQLRVHMKYLNFPILGDEVYGRVDGSLKKITLML 274
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>RLUC_HAEDU (P59835) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 320

 Score = 35.0 bits (79), Expect = 0.22
 Identities = 23/92 (25%), Positives = 38/92 (41%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H +Y G+P+  D+ YG                    D     + ++R  LHA
Sbjct: 242 GRTHQIRVHTQYAGHPIACDDRYGDQAF----------------DAKLKQAGLNRLFLHA 285

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 383
             + F+HP + + +  + P       +L +LR
Sbjct: 286 HSIRFEHPKTAEQMFITAPLDHHLKTILAKLR 317
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>RLUC_RICPR (Q9ZDR7) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 303

 Score = 35.0 bits (79), Expect = 0.22
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLS 563
           G + Q+R HA+ LG P+LGD+ YG  + M  S
Sbjct: 236 GRMHQLRLHAQLLGCPILGDDKYGNKEIMPYS 267
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>RLUA_VIBVU (Q8DCG0) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 250

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 23/70 (32%), Positives = 30/70 (42%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   Q+R H + LG+P++GDE Y    + T S                     +R  LHA
Sbjct: 163 GRSHQLRVHMQALGHPIVGDEFYAQGDAFTFS---------------------ERLELHA 201

Query: 478 ALLGFKHPHS 449
           A L F HP S
Sbjct: 202 AELSFYHPKS 211
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>RLUA_SHIFL (P0AA38) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 218

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 21/79 (26%), Positives = 31/79 (39%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   Q+R H   LG+P+LGD  Y   ++  ++                      R  LHA
Sbjct: 158 GRSHQLRVHMLALGHPILGDRFYASPEARAMA---------------------PRLLLHA 196

Query: 478 ALLGFKHPHSGKALEFSCP 422
            +L   HP  G ++ F  P
Sbjct: 197 EMLTITHPAYGNSMTFKAP 215
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>RLUA_ECOLI (P0AA37) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 218

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 21/79 (26%), Positives = 31/79 (39%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   Q+R H   LG+P+LGD  Y   ++  ++                      R  LHA
Sbjct: 158 GRSHQLRVHMLALGHPILGDRFYASPEARAMA---------------------PRLLLHA 196

Query: 478 ALLGFKHPHSGKALEFSCP 422
            +L   HP  G ++ F  P
Sbjct: 197 EMLTITHPAYGNSMTFKAP 215
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>RLUA_ECOL6 (Q8FL93) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 218

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 21/79 (26%), Positives = 31/79 (39%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   Q+R H   LG+P+LGD  Y   ++  ++                      R  LHA
Sbjct: 158 GRSHQLRVHMLALGHPILGDRFYASPEARAMA---------------------PRLLLHA 196

Query: 478 ALLGFKHPHSGKALEFSCP 422
            +L   HP  G ++ F  P
Sbjct: 197 EMLTITHPAYGNSMTFKAP 215
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>RLUA_ECO57 (Q8XA10) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 218

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 21/79 (26%), Positives = 31/79 (39%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   Q+R H   LG+P+LGD  Y   ++  ++                      R  LHA
Sbjct: 158 GRSHQLRVHMLALGHPILGDRFYASPEARAMA---------------------PRLLLHA 196

Query: 478 ALLGFKHPHSGKALEFSCP 422
            +L   HP  G ++ F  P
Sbjct: 197 EMLTITHPAYGNSMTFKAP 215
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>TRUC_SALTI (Q8Z439) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 260

 Score = 34.3 bits (77), Expect = 0.37
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
 Frame = -3

Query: 664 RQGALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCL 485
           + G   Q+R H  +L +P++GD  +G         LR    +  H     L+       L
Sbjct: 157 KTGRKHQLRRHLAHLRHPIIGDSKHGD--------LRQNRSAAEHFACRRLM-------L 201

Query: 484 HAALLGFKHPHSGKALEFSCPPPDDFTEVLDEL--RRVTPTNE 362
           HA+ L   HP +G+ L       + + +VL +   R + P NE
Sbjct: 202 HASRLELTHPFTGQPLIIQAGLDETWMQVLTQFGWRGLLPDNE 244
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>TRUC_YERPE (Q8ZH72) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 257

 Score = 33.9 bits (76), Expect = 0.48
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   Q+R H  ++ +P++GD T+G         LR       H   S L+       LHA
Sbjct: 159 GRKHQLRRHMAHIRHPIIGDSTHGD--------LRQNRGVAQHFGCSRLM-------LHA 203

Query: 478 ALLGFKHPHSGKAL 437
           + L   HP +G+AL
Sbjct: 204 SHLHLNHPVTGEAL 217
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>TRUC_HAEDU (P59840) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 243

 Score = 33.1 bits (74), Expect = 0.82
 Identities = 24/79 (30%), Positives = 37/79 (46%)
 Frame = -3

Query: 664 RQGALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCL 485
           + G   Q+R H K+L +P++GD  YG        L + R  ++  G         +R  L
Sbjct: 157 KTGRKHQLRRHMKHLFHPIMGDTKYG-------DLHQNRRLTEKTG--------CNRLML 201

Query: 484 HAALLGFKHPHSGKALEFS 428
           HA LL F HP + + +  S
Sbjct: 202 HARLLHFTHPKTLQKITIS 220
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>RLUA_VIBCH (Q9KP71) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 245

 Score = 33.1 bits (74), Expect = 0.82
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   Q+R H + LG+P++GD+ Y   +++  +                     DR  LHA
Sbjct: 158 GRSHQLRVHMQSLGHPIVGDDLYAPPEAVEFA---------------------DRLQLHA 196

Query: 478 ALLGFKHPHS 449
           A L F HP S
Sbjct: 197 AELCFYHPRS 206
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>TRUC_PECCC (Q47417) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 376

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 10/115 (8%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   Q+R H  ++ +P++GD  +G         LR     + H     L+       LHA
Sbjct: 273 GRKHQLRRHMSHIHHPIIGDTAHGD--------LRHNRGMESHFSCGRLM-------LHA 317

Query: 478 ALLGFKHPHSGKAL----EFSCPPPDDFTE-----VLDELRRVT-PTNEGQDSDN 344
           + L   HP SG+ L     +  P     T+     +L E   V  P + GQDS++
Sbjct: 318 SELQLNHPVSGQPLTLQARWDAPWQGVVTQFGWKGILPEFEGVEFPADSGQDSEH 372
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>TRUC_SALTY (Q8ZMD5) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 260

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
 Frame = -3

Query: 664 RQGALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCL 485
           + G   Q+R H  +L +P++GD  +G         LR    +  H     L+       L
Sbjct: 157 KTGRKHQLRRHLAHLRHPIIGDSKHGD--------LRQNRSAAEHFACRRLM-------L 201

Query: 484 HAALLGFKHPHSGKALEFSCPPPDDFTEVLDEL--RRVTPTNE 362
           HA+ L   HP +G+ L       + + + L +   R + P NE
Sbjct: 202 HASRLELTHPFTGQPLIIQAGLDETWMQALTQFGWRGLLPDNE 244
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>TRUC_PASMU (Q9CNF3) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 243

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 23/68 (33%), Positives = 31/68 (45%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   Q+R H K+L +P+LGD  YG        L + R  + + G        + R  LHA
Sbjct: 160 GRKHQLRRHMKHLFHPILGDTQYG-------DLHQNRALTTHTG--------VQRLMLHA 204

Query: 478 ALLGFKHP 455
             L F HP
Sbjct: 205 ERLIFTHP 212
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>TRUC_VIBVU (Q8DBG5) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 245

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = -3

Query: 664 RQGALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCL 485
           + G   Q+R H  +L +P++GD T+G  K               H  L        R  L
Sbjct: 157 KTGRKHQLRRHMAHLRHPIVGDTTHGDGK---------------HNKLFREEFDAPRLLL 201

Query: 484 HAALLGFKHPHS 449
           HA+ L F HP++
Sbjct: 202 HASELRFVHPYT 213
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>RLUA_VIBPA (Q87LD3) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 250

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   Q+R H + LG+P++GDE Y   ++   S                     +R  LHA
Sbjct: 163 GRSHQLRVHMQALGHPIVGDEFYATEEAKVFS---------------------ERLELHA 201

Query: 478 ALLGFKHPHS 449
           + L F HP S
Sbjct: 202 SELSFYHPKS 211
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>I10R2_MOUSE (Q61190) Interleukin-10 receptor beta chain precursor (IL-10R-B)|
           (IL-10R2) (Cytokine receptor family 2 member 4)
           (Cytokine receptor class-II member 4) (CRF2-4) (CDw210b
           antigen)
          Length = 349

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -3

Query: 460 HPHSGKALEFSCPPPDDFTEVLDELRRVTPTNEG---QDSDNAA 338
           HPH    L FS PPP++  EV D+L  ++  +EG      DN A
Sbjct: 272 HPHHSTFLLFSFPPPEE-AEVFDKLSIISEESEGSKQSPEDNCA 314
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>RLUA_YERPE (Q8ZIK1) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 206

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 21/78 (26%), Positives = 30/78 (38%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   Q+R H   +G+P+LGD  Y                   H +   + S++    LHA
Sbjct: 146 GRSHQLRVHMLAMGHPILGDGFYA------------------HPEAKAMASRLQ---LHA 184

Query: 478 ALLGFKHPHSGKALEFSC 425
             L   HP  G  + F C
Sbjct: 185 QQLCITHPEFGTPMHFKC 202
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>VG48_SHV21 (Q01033) Hypothetical gene 48 protein|
          Length = 797

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 275 LKVFGLV-ASLSEWPN*WSGRQAFPHVQREIGATPR 171
           L VFG+  A+  EW N W   Q FP+V R +G   R
Sbjct: 12  LPVFGVTQANKEEWDNIWKNFQQFPNVSRTLGLLRR 47
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>RLUC_PSEAE (Q9HZM9) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 318

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 27/91 (29%), Positives = 37/91 (40%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR HAK+ G+ + GD  YG                 +  ++  L  K  R  LHA
Sbjct: 243 GRTHQIRVHAKHAGHAIAGDPKYG--------------DEDFSREIRELGGK--RLFLHA 286

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDEL 386
           A L    P  G+ LE   P  + +   L+ L
Sbjct: 287 AQLRVPLP-DGQVLELEAPVDEMWQRSLERL 316
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>TRUC_VIBCH (Q9KTL4) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 244

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 21/76 (27%), Positives = 32/76 (42%)
 Frame = -3

Query: 664 RQGALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCL 485
           + G   Q+R H  +L +P++GD T+G                  H  L        R  L
Sbjct: 157 KTGRKHQLRRHMAHLRHPIVGDTTHG---------------DGVHNRLFREHFSAQRLML 201

Query: 484 HAALLGFKHPHSGKAL 437
           HA+ L F HP++ + L
Sbjct: 202 HASELRFMHPYTQQPL 217
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>Y956_HELPY (O25610) Hypothetical RNA pseudouridine synthase HP0956 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 242

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 664 RQGALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLL 557
           + G   QIR H K++ +P++GD  Y    S+   L+
Sbjct: 184 KTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAKRLM 219
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>TRUC_VIBPA (Q87MD4) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 246

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 22/89 (24%), Positives = 36/89 (40%)
 Frame = -3

Query: 664 RQGALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCL 485
           + G   Q+R H  +L +P++GD ++G  K               H  L        R  L
Sbjct: 161 KTGRKHQLRRHMAHLRHPIVGDTSHGDGK---------------HNKLFRNEFDSHRLLL 205

Query: 484 HAALLGFKHPHSGKALEFSCPPPDDFTEV 398
           HA+ L F HP + + L       D + ++
Sbjct: 206 HASELRFVHPFTNEELVMKASIDDTWQQL 234
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>Y292_MYCPN (P75485) Hypothetical RNA pseudouridine synthase MG209 homolog (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase) (H10_orf309)
          Length = 309

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 23/91 (25%), Positives = 35/91 (38%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H +++ +P+  D  YG         L+    ++Y               LHA
Sbjct: 227 GRTHQIRVHLQFIKHPVYNDPLYG---------LKSEQATEYG------------QYLHA 265

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDEL 386
             + F HP   K + F       F++ LD L
Sbjct: 266 QQISFIHPTLNKEMGFEAQLDKTFSDKLDNL 296
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>SAK1_SCHPO (P48383) Protein sak1|
          Length = 766

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 17/67 (25%)
 Frame = -1

Query: 258 CGISE*VAKLMEWSSSFSTCS--------------ARD---RRYTKKEAPGILTRLGDIF 130
           C   E VA L EW S  STCS              A D    R   ++  G+L R+ D F
Sbjct: 558 CNDKEAVAALDEWYSILSTCSNPSELLDPLKDKHEASDTSMNRVELRQIDGVLDRMADFF 617

Query: 129 LVLFSMF 109
           L L S F
Sbjct: 618 LELPSRF 624
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>YK27_CAEEL (O16686) Hypothetical protein K07E8.7 in chromosome IV|
          Length = 432

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETY 590
           G   QIR H+++LG+P+ GD+ Y
Sbjct: 292 GRTHQIRVHSQFLGHPIAGDQIY 314
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>YRM2_CAEEL (Q09600) Hypothetical RING finger protein R06F6.2 in chromosome II|
          Length = 950

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 186 DLSLNMWKSLTTTPSVWPLTQRCHKSKHLQVKHHISEAAFYVFSICIS 329
           D +L M +    TP +  +  RCHKSK L + H        +  +C S
Sbjct: 643 DAALQMAQLFDCTPVIEHILMRCHKSKELMMYHQKKRDLEAIIRLCQS 690
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>Y956_HELPJ (Q9ZKP5) Hypothetical RNA pseudouridine synthase jhp_0890 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 242

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 664 RQGALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLL 557
           + G   QIR H K++ +P++GD  Y    S    L+
Sbjct: 184 KTGRTHQIRVHLKHINHPIIGDTLYNNEPSSAKRLM 219
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>Y505_ZYMMO (O66114) Hypothetical RNA pseudouridine synthase ZMO0505 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 219

 Score = 26.6 bits (57), Expect(2) = 7.5
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 658 GALTQIRAHAKY-LGNPLLGDETYGGTKSMTLS 563
           G   Q+R HA   LG P++GD  YG  K   +S
Sbjct: 153 GRTHQLRVHAATGLGLPIVGDPFYGSHKDENIS 185



 Score = 21.9 bits (45), Expect(2) = 7.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 686 ALVEWRLETGRTH 648
           +LV +R ETGRTH
Sbjct: 144 SLVAFRPETGRTH 156
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>RLUC_BUCBP (Q89AH2) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 315

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 27/91 (29%), Positives = 37/91 (40%)
 Frame = -3

Query: 658 GALTQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLHA 479
           G   QIR H  +L  P++ D  YG  K      L     +K++         I+R  LHA
Sbjct: 239 GRTHQIRVHLLHLNYPIVLDAKYGIKK------LDYFIKNKFN---------INRLLLHA 283

Query: 478 ALLGFKHPHSGKALEFSCPPPDDFTEVLDEL 386
             + F HP   K +  + P    F  VL  L
Sbjct: 284 ESINFFHPKRKKNILITAPLDYVFKTVLKNL 314


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,182,210
Number of Sequences: 219361
Number of extensions: 2315950
Number of successful extensions: 5711
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 5411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5628
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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