Clone Information

BLAST Search Result

Clone Name	rbags7a24
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY110407.1\| Zea mays CL40803_1 mRNA sequence	268	2e-68
2	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	244	3e-61
3	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	244	3e-61
4	gb\|AC137547.2\| Oryza sativa (japonica cultivar-group) chromosome...	244	3e-61
5	dbj\|AK066736.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	244	3e-61
6	ref\|XM_479557.1\| Oryza sativa (japonica cultivar-group), mRNA	131	3e-27
7	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	131	3e-27
8	dbj\|AP005099.2\| Oryza sativa (japonica cultivar-group) genomic D...	131	3e-27
9	dbj\|AK103213.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	131	3e-27
10	gb\|AY111892.1\| Zea mays CL34424_1 mRNA sequence	113	8e-22
11	gb\|AC132215.1\| Genomic sequence for Oryza sativa, Nipponbare str...	58	4e-05
12	gb\|AC155890.2\| Medicago truncatula chromosome 7 BAC clone mth2-4...	56	2e-04
13	gb\|BT014535.1\| Lycopersicon esculentum clone 133949R, mRNA sequence	48	0.037
14	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.037
15	dbj\|AP005633.3\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.037
16	dbj\|AP005392.3\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.037
17	dbj\|AK100641.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	48	0.037
18	ref\|XM_468666.1\| Oryza sativa (japonica cultivar-group), mRNA	46	0.15
19	gb\|AC120529.3\| Oryza sativa (japonica cultivar-group) chromosome...	46	0.15
20	gb\|AC123519.2\| Oryza sativa (japonica cultivar-group) chromosome...	46	0.15
21	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.15
22	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.15
23	dbj\|AK105411.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	46	0.15
24	dbj\|AK100228.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	46	0.15
25	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	46	0.15
26	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	46	0.15
27	emb\|BX000506.4\|CNS08CDW Oryza sativa chromosome 12, . BAC OJ1311...	46	0.15
28	emb\|BX000495.1\|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb...	46	0.15
29	gb\|AC114583.7\| Mus musculus chromosome 1, clone RP23-195A24, com...	44	0.58
30	gb\|AC111028.10\| Mus musculus chromosome 8, clone RP23-221P20, co...	42	2.3
31	gb\|AC169370.4\| Sorghum bicolor clone SB_BBc0011I20, complete seq...	42	2.3
32	ref\|NM_125532.3\| Arabidopsis thaliana exonuclease AT5G61390 mRNA...	40	9.1
33	gb\|AC112361.5\| Rattus norvegicus 9 BAC CH230-61F12 (Children's H...	40	9.1
34	ref\|XM_651191.1\| Entamoeba histolytica HM-1:IMSS hypothetical pr...	40	9.1
35	gb\|AC146745.20\| Medicago truncatula clone mth2-53p19, complete s...	40	9.1
36	gb\|AC149637.11\| Medicago truncatula clone mth2-181h2, complete s...	40	9.1
37	emb\|AL731853.9\| Mouse DNA sequence from clone RP23-128G5 on chro...	40	9.1
38	gb\|AF332597.1\|AF332597 Clarias gariepinus male-specific DNA mark...	40	9.1
39	emb\|BX830408.1\|CNS0A1G9 Arabidopsis thaliana Full-length cDNA Co...	40	9.1
40	emb\|BX829924.1\|CNS0A1FO Arabidopsis thaliana Full-length cDNA Co...	40	9.1
41	emb\|BX829833.1\|CNS0A17O Arabidopsis thaliana Full-length cDNA Co...	40	9.1
42	gb\|AC156799.2\| Mus musculus BAC clone RP23-341L15 from chromosom...	40	9.1
43	gb\|AC024255.22\|AC024255 Homo sapiens 12 BAC RP11-31A23 (Roswell ...	40	9.1
44	emb\|BX324159.6\| Zebrafish DNA sequence from clone CH211-10O1 in ...	40	9.1
45	dbj\|AB010073.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	40	9.1
46	emb\|AJ276420.1\|CAR276420 Cicer arietinum mRNA for 68 kDa protein	40	9.1
47	gb\|AC152923.2\| Mus musculus BAC clone RP24-267O6 from 5, complet...	40	9.1

>gb|AY110407.1| Zea mays CL40803_1 mRNA sequence
          Length = 667

 Score =  268 bits (135), Expect = 2e-68
 Identities = 243/279 (87%)
 Strand = Plus / Plus

                                                                       
Query: 373 ctatggacttacattgcactcgtccatgaatcgctcatctcgtgccagaaacctcttcca 432
           |||||||||||||||||||||||||||||||| ||| |||||||  ||||||||||||||
Sbjct: 344 ctatggacttacattgcactcgtccatgaatctctcgtctcgtgtaagaaacctcttcca 403

                                                                       
Query: 433 gtacttcctgtaatttggtatacccaattcaagccaaggtttcatattaccattgtagtg 492
           ||||||||| |||| |||||||||||| |||||||||||||||||||| ||||| || ||
Sbjct: 404 gtacttcctataatctggtatacccaactcaagccaaggtttcatatttccattataatg 463

                                                                       
Query: 493 caacgatgctgaagttcggataacttcttcttcaattccatagtgatagccaagcccaga 552
           ||| ||||| ||| |  | | || |||||||| ||||||||||| ||| ||||| |||||
Sbjct: 464 caatgatgcagaattctgaacaagttcttctttaattccatagtcatatccaagtccaga 523

                                                                       
Query: 553 taaagtcaacctctcatcaaggggatatacaagattctggaaggaaagcaagcttatagg 612
           |||| |||| || |||||||| ||||||| ||||| |||||| || | ||| ||||||||
Sbjct: 524 taaaatcaatctttcatcaagtggatatagaagatgctggaacgacaacaaacttatagg 583

                                                  
Query: 613 taaagctgcagctcgcagtgaggcctcatcatcattgtt 651
            ||||||| |||||| ||||||||||| |||||||||||
Sbjct: 584 caaagctgaagctcgtagtgaggcctcgtcatcattgtt 622



 Score =  113 bits (57), Expect = 8e-22
 Identities = 72/77 (93%)
 Strand = Plus / Plus

                                                                       
Query: 191 catccatcaagctcactaattcaatgaacagatggtgttggatctactctgtcaaaattg 250
           |||||||| ||||||| | |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 162 catccatcgagctcacaagttcaatgaacagatggtgctggatctactctgtcaaaattg 221

                            
Query: 251 atggctaatgactgctt 267
           ||||||| |||||||||
Sbjct: 222 atggctagtgactgctt 238



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 297 gtcctcttggtatatagtacagcagtagac 326
           |||||||| |||||||||||||||||||||
Sbjct: 269 gtcctcttagtatatagtacagcagtagac 298

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  244 bits (123), Expect = 3e-61
 Identities = 187/207 (90%), Gaps = 1/207 (0%)
 Strand = Plus / Plus

                                                                            
Query: 67       ctgttccgtaatctagatgatgagagtgacactcccttttacctgaagcctcaccactac 126
                |||| ||||| |||||| | |||||||||  |||||||| |||||||||||||| |  ||
Sbjct: 12106853 ctgtcccgtactctagaaggtgagagtgatgctcccttt-acctgaagcctcactaacac 12106911

                                                                            
Query: 127      agatcaccattgtctactgcattatccttcgacttaacactaatttctctaactgcagaa 186
                  |||| |||||||||||||||||||||||  ||||| ||||||||||||||||| ||||
Sbjct: 12106912 tcatcatcattgtctactgcattatccttcagcttaagactaatttctctaactgtagaa 12106971

                                                                            
Query: 187      aaaacatccatcaagctcactaattcaatgaacagatggtgttggatctactctgtcaaa 246
                ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 12106972 aaaccatccatcaagctcactaattcaatgaacagatggtgctggatctactctgtcaaa 12107031

                                           
Query: 247      attgatggctaatgactgctttcctgg 273
                ||||||||||||| |||||||||||||
Sbjct: 12107032 attgatggctaataactgctttcctgg 12107058



 Score =  214 bits (108), Expect = 3e-52
 Identities = 292/352 (82%), Gaps = 1/352 (0%)
 Strand = Plus / Plus

                                                                            
Query: 299      cctcttggtatatagtacagcagtagacgaaacaatctaccgtcaaatcttctggtttcc 358
                ||||| |||||||| |||||||| ||||| | ||||||||||||| || || || || ||
Sbjct: 12107090 cctctaggtatataatacagcagcagacgtagcaatctaccgtcagatattttgtttccc 12107149

                                                                            
Query: 359      aggtccaaagtatgctatggacttacattgcactcgtccatgaatcgctcatctcgtgcc 418
                ||||  || ||    |||||||||||||||||||| ||||||||||| ||||||||||  
Sbjct: 12107150 aggtttaa-gtgcattatggacttacattgcactcatccatgaatcgttcatctcgtgta 12107208

                                                                            
Query: 419      agaaacctcttccagtacttcctgtaatttggtatacccaattcaagccaaggtttcata 478
                |||||||||||||||||||||||||| |  |||||||| || ||||||||||| ||||||
Sbjct: 12107209 agaaacctcttccagtacttcctgtagtccggtatacctaactcaagccaaggcttcata 12107268

                                                                            
Query: 479      ttaccattgtagtgcaacgatgctgaagttcggataacttcttcttcaattccatagtga 538
                ||||| || || ||||| ||| | ||| | |||| || ||| ||||  ||  |||||| |
Sbjct: 12107269 ttaccgttataatgcaatgatacagaattccggacaagttcctctttgatggcatagtca 12107328

                                                                            
Query: 539      tagccaagcccagataaagtcaacctctcatcaaggggatatacaagattctggaaggaa 598
                || ||||||||||||| |||||| || ||||| || ||||||| |||||  |  |||| |
Sbjct: 12107329 tatccaagcccagatatagtcaatctttcatcgagaggatatataagatgttcaaaggca 12107388

                                                                    
Query: 599      agcaagcttataggtaaagctgcagctcgcagtgaggcctcatcatcattgt 650
                ||||||||||| || |||||||||||||||| ||| || |||||||||||||
Sbjct: 12107389 agcaagcttattggcaaagctgcagctcgcactgaagcttcatcatcattgt 12107440



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 464      agccaaggtttcatattaccattgtagtgca 494
                ||||| ||||||||||| |||||||||||||
Sbjct: 16922051 agccatggtttcatattcccattgtagtgca 16922081

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  244 bits (123), Expect = 3e-61
 Identities = 187/207 (90%), Gaps = 1/207 (0%)
 Strand = Plus / Plus

                                                                            
Query: 67       ctgttccgtaatctagatgatgagagtgacactcccttttacctgaagcctcaccactac 126
                |||| ||||| |||||| | |||||||||  |||||||| |||||||||||||| |  ||
Sbjct: 12103616 ctgtcccgtactctagaaggtgagagtgatgctcccttt-acctgaagcctcactaacac 12103674

                                                                            
Query: 127      agatcaccattgtctactgcattatccttcgacttaacactaatttctctaactgcagaa 186
                  |||| |||||||||||||||||||||||  ||||| ||||||||||||||||| ||||
Sbjct: 12103675 tcatcatcattgtctactgcattatccttcagcttaagactaatttctctaactgtagaa 12103734

                                                                            
Query: 187      aaaacatccatcaagctcactaattcaatgaacagatggtgttggatctactctgtcaaa 246
                ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 12103735 aaaccatccatcaagctcactaattcaatgaacagatggtgctggatctactctgtcaaa 12103794

                                           
Query: 247      attgatggctaatgactgctttcctgg 273
                ||||||||||||| |||||||||||||
Sbjct: 12103795 attgatggctaataactgctttcctgg 12103821



 Score =  214 bits (108), Expect = 3e-52
 Identities = 292/352 (82%), Gaps = 1/352 (0%)
 Strand = Plus / Plus

                                                                            
Query: 299      cctcttggtatatagtacagcagtagacgaaacaatctaccgtcaaatcttctggtttcc 358
                ||||| |||||||| |||||||| ||||| | ||||||||||||| || || || || ||
Sbjct: 12103853 cctctaggtatataatacagcagcagacgtagcaatctaccgtcagatattttgtttccc 12103912

                                                                            
Query: 359      aggtccaaagtatgctatggacttacattgcactcgtccatgaatcgctcatctcgtgcc 418
                ||||  || ||    |||||||||||||||||||| ||||||||||| ||||||||||  
Sbjct: 12103913 aggtttaa-gtgcattatggacttacattgcactcatccatgaatcgttcatctcgtgta 12103971

                                                                            
Query: 419      agaaacctcttccagtacttcctgtaatttggtatacccaattcaagccaaggtttcata 478
                |||||||||||||||||||||||||| |  |||||||| || ||||||||||| ||||||
Sbjct: 12103972 agaaacctcttccagtacttcctgtagtccggtatacctaactcaagccaaggcttcata 12104031

                                                                            
Query: 479      ttaccattgtagtgcaacgatgctgaagttcggataacttcttcttcaattccatagtga 538
                ||||| || || ||||| ||| | ||| | |||| || ||| ||||  ||  |||||| |
Sbjct: 12104032 ttaccgttataatgcaatgatacagaattccggacaagttcctctttgatggcatagtca 12104091

                                                                            
Query: 539      tagccaagcccagataaagtcaacctctcatcaaggggatatacaagattctggaaggaa 598
                || ||||||||||||| |||||| || ||||| || ||||||| |||||  |  |||| |
Sbjct: 12104092 tatccaagcccagatatagtcaatctttcatcgagaggatatataagatgttcaaaggca 12104151

                                                                    
Query: 599      agcaagcttataggtaaagctgcagctcgcagtgaggcctcatcatcattgt 650
                ||||||||||| || |||||||||||||||| ||| || |||||||||||||
Sbjct: 12104152 agcaagcttattggcaaagctgcagctcgcactgaagcttcatcatcattgt 12104203



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 464      agccaaggtttcatattaccattgtagtgca 494
                ||||| ||||||||||| |||||||||||||
Sbjct: 16915624 agccatggtttcatattcccattgtagtgca 16915654

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>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0052J20,
              complete sequence
          Length = 144969

 Score =  244 bits (123), Expect = 3e-61
 Identities = 187/207 (90%), Gaps = 1/207 (0%)
 Strand = Plus / Plus

                                                                          
Query: 67     ctgttccgtaatctagatgatgagagtgacactcccttttacctgaagcctcaccactac 126
              |||| ||||| |||||| | |||||||||  |||||||| |||||||||||||| |  ||
Sbjct: 127433 ctgtcccgtactctagaaggtgagagtgatgctcccttt-acctgaagcctcactaacac 127491

                                                                          
Query: 127    agatcaccattgtctactgcattatccttcgacttaacactaatttctctaactgcagaa 186
                |||| |||||||||||||||||||||||  ||||| ||||||||||||||||| ||||
Sbjct: 127492 tcatcatcattgtctactgcattatccttcagcttaagactaatttctctaactgtagaa 127551

                                                                          
Query: 187    aaaacatccatcaagctcactaattcaatgaacagatggtgttggatctactctgtcaaa 246
              ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 127552 aaaccatccatcaagctcactaattcaatgaacagatggtgctggatctactctgtcaaa 127611

                                         
Query: 247    attgatggctaatgactgctttcctgg 273
              ||||||||||||| |||||||||||||
Sbjct: 127612 attgatggctaataactgctttcctgg 127638



 Score =  214 bits (108), Expect = 3e-52
 Identities = 292/352 (82%), Gaps = 1/352 (0%)
 Strand = Plus / Plus

                                                                          
Query: 299    cctcttggtatatagtacagcagtagacgaaacaatctaccgtcaaatcttctggtttcc 358
              ||||| |||||||| |||||||| ||||| | ||||||||||||| || || || || ||
Sbjct: 127670 cctctaggtatataatacagcagcagacgtagcaatctaccgtcagatattttgtttccc 127729

                                                                          
Query: 359    aggtccaaagtatgctatggacttacattgcactcgtccatgaatcgctcatctcgtgcc 418
              ||||  || ||    |||||||||||||||||||| ||||||||||| ||||||||||  
Sbjct: 127730 aggtttaa-gtgcattatggacttacattgcactcatccatgaatcgttcatctcgtgta 127788

                                                                          
Query: 419    agaaacctcttccagtacttcctgtaatttggtatacccaattcaagccaaggtttcata 478
              |||||||||||||||||||||||||| |  |||||||| || ||||||||||| ||||||
Sbjct: 127789 agaaacctcttccagtacttcctgtagtccggtatacctaactcaagccaaggcttcata 127848

                                                                          
Query: 479    ttaccattgtagtgcaacgatgctgaagttcggataacttcttcttcaattccatagtga 538
              ||||| || || ||||| ||| | ||| | |||| || ||| ||||  ||  |||||| |
Sbjct: 127849 ttaccgttataatgcaatgatacagaattccggacaagttcctctttgatggcatagtca 127908

                                                                          
Query: 539    tagccaagcccagataaagtcaacctctcatcaaggggatatacaagattctggaaggaa 598
              || ||||||||||||| |||||| || ||||| || ||||||| |||||  |  |||| |
Sbjct: 127909 tatccaagcccagatatagtcaatctttcatcgagaggatatataagatgttcaaaggca 127968

                                                                  
Query: 599    agcaagcttataggtaaagctgcagctcgcagtgaggcctcatcatcattgt 650
              ||||||||||| || |||||||||||||||| ||| || |||||||||||||
Sbjct: 127969 agcaagcttattggcaaagctgcagctcgcactgaagcttcatcatcattgt 128020

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>dbj|AK066736.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088O16, full
            insert sequence
          Length = 2822

 Score =  244 bits (123), Expect = 3e-61
 Identities = 187/207 (90%), Gaps = 1/207 (0%)
 Strand = Plus / Minus

                                                                        
Query: 67   ctgttccgtaatctagatgatgagagtgacactcccttttacctgaagcctcaccactac 126
            |||| ||||| |||||| | |||||||||  |||||||| |||||||||||||| |  ||
Sbjct: 2566 ctgtcccgtactctagaaggtgagagtgatgctcccttt-acctgaagcctcactaacac 2508

                                                                        
Query: 127  agatcaccattgtctactgcattatccttcgacttaacactaatttctctaactgcagaa 186
              |||| |||||||||||||||||||||||  ||||| ||||||||||||||||| ||||
Sbjct: 2507 tcatcatcattgtctactgcattatccttcagcttaagactaatttctctaactgtagaa 2448

                                                                        
Query: 187  aaaacatccatcaagctcactaattcaatgaacagatggtgttggatctactctgtcaaa 246
            ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2447 aaaccatccatcaagctcactaattcaatgaacagatggtgctggatctactctgtcaaa 2388

                                       
Query: 247  attgatggctaatgactgctttcctgg 273
            ||||||||||||| |||||||||||||
Sbjct: 2387 attgatggctaataactgctttcctgg 2361



 Score =  214 bits (108), Expect = 3e-52
 Identities = 292/352 (82%), Gaps = 1/352 (0%)
 Strand = Plus / Minus

                                                                        
Query: 299  cctcttggtatatagtacagcagtagacgaaacaatctaccgtcaaatcttctggtttcc 358
            ||||| |||||||| |||||||| ||||| | ||||||||||||| || || || || ||
Sbjct: 2329 cctctaggtatataatacagcagcagacgtagcaatctaccgtcagatattttgtttccc 2270

                                                                        
Query: 359  aggtccaaagtatgctatggacttacattgcactcgtccatgaatcgctcatctcgtgcc 418
            ||||  || ||    |||||||||||||||||||| ||||||||||| ||||||||||  
Sbjct: 2269 aggtttaa-gtgcattatggacttacattgcactcatccatgaatcgttcatctcgtgta 2211

                                                                        
Query: 419  agaaacctcttccagtacttcctgtaatttggtatacccaattcaagccaaggtttcata 478
            |||||||||||||||||||||||||| |  |||||||| || ||||||||||| ||||||
Sbjct: 2210 agaaacctcttccagtacttcctgtagtccggtatacctaactcaagccaaggcttcata 2151

                                                                        
Query: 479  ttaccattgtagtgcaacgatgctgaagttcggataacttcttcttcaattccatagtga 538
            ||||| || || ||||| ||| | ||| | |||| || ||| ||||  ||  |||||| |
Sbjct: 2150 ttaccgttataatgcaatgatacagaattccggacaagttcctctttgatggcatagtca 2091

                                                                        
Query: 539  tagccaagcccagataaagtcaacctctcatcaaggggatatacaagattctggaaggaa 598
            || ||||||||||||| |||||| || ||||| || ||||||| |||||  |  |||| |
Sbjct: 2090 tatccaagcccagatatagtcaatctttcatcgagaggatatataagatgttcaaaggca 2031

                                                                
Query: 599  agcaagcttataggtaaagctgcagctcgcagtgaggcctcatcatcattgt 650
            ||||||||||| || |||||||||||||||| ||| || |||||||||||||
Sbjct: 2030 agcaagcttattggcaaagctgcagctcgcactgaagcttcatcatcattgt 1979

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>ref|XM_479557.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2768

 Score =  131 bits (66), Expect = 3e-27
 Identities = 135/158 (85%)
 Strand = Plus / Minus

                                                                        
Query: 422  aacctcttccagtacttcctgtaatttggtatacccaattcaagccaaggtttcatatta 481
            ||||||||||||||  |||||||  |||||||||| ||||||||||||||||||||||| 
Sbjct: 2051 aacctcttccagtatctcctgtagcttggtatacctaattcaagccaaggtttcatattg 1992

                                                                        
Query: 482  ccattgtagtgcaacgatgctgaagttcggataacttcttcttcaattccatagtgatag 541
            |||||||||||||| | ||| ||| | ||   ||| ||||| |||||| |||| | ||| 
Sbjct: 1991 ccattgtagtgcaatgctgcagaactccgtgcaacgtcttcatcaattgcataatcatat 1932

                                                  
Query: 542  ccaagcccagataaagtcaacctctcatcaaggggata 579
            ||||| ||||||| | ||||||||||||||||||||||
Sbjct: 1931 ccaagtccagatagaatcaacctctcatcaaggggata 1894

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  131 bits (66), Expect = 3e-27
 Identities = 135/158 (85%)
 Strand = Plus / Minus

                                                                            
Query: 422      aacctcttccagtacttcctgtaatttggtatacccaattcaagccaaggtttcatatta 481
                ||||||||||||||  |||||||  |||||||||| ||||||||||||||||||||||| 
Sbjct: 28859732 aacctcttccagtatctcctgtagcttggtatacctaattcaagccaaggtttcatattg 28859673

                                                                            
Query: 482      ccattgtagtgcaacgatgctgaagttcggataacttcttcttcaattccatagtgatag 541
                |||||||||||||| | ||| ||| | ||   ||| ||||| |||||| |||| | ||| 
Sbjct: 28859672 ccattgtagtgcaatgctgcagaactccgtgcaacgtcttcatcaattgcataatcatat 28859613

                                                      
Query: 542      ccaagcccagataaagtcaacctctcatcaaggggata 579
                ||||| ||||||| | ||||||||||||||||||||||
Sbjct: 28859612 ccaagtccagatagaatcaacctctcatcaaggggata 28859575

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>dbj|AP005099.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0008J01
          Length = 159900

 Score =  131 bits (66), Expect = 3e-27
 Identities = 135/158 (85%)
 Strand = Plus / Minus

                                                                          
Query: 422    aacctcttccagtacttcctgtaatttggtatacccaattcaagccaaggtttcatatta 481
              ||||||||||||||  |||||||  |||||||||| ||||||||||||||||||||||| 
Sbjct: 117418 aacctcttccagtatctcctgtagcttggtatacctaattcaagccaaggtttcatattg 117359

                                                                          
Query: 482    ccattgtagtgcaacgatgctgaagttcggataacttcttcttcaattccatagtgatag 541
              |||||||||||||| | ||| ||| | ||   ||| ||||| |||||| |||| | ||| 
Sbjct: 117358 ccattgtagtgcaatgctgcagaactccgtgcaacgtcttcatcaattgcataatcatat 117299

                                                    
Query: 542    ccaagcccagataaagtcaacctctcatcaaggggata 579
              ||||| ||||||| | ||||||||||||||||||||||
Sbjct: 117298 ccaagtccagatagaatcaacctctcatcaaggggata 117261

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>dbj|AK103213.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033122M12, full
            insert sequence
          Length = 2768

 Score =  131 bits (66), Expect = 3e-27
 Identities = 135/158 (85%)
 Strand = Plus / Minus

                                                                        
Query: 422  aacctcttccagtacttcctgtaatttggtatacccaattcaagccaaggtttcatatta 481
            ||||||||||||||  |||||||  |||||||||| ||||||||||||||||||||||| 
Sbjct: 2051 aacctcttccagtatctcctgtagcttggtatacctaattcaagccaaggtttcatattg 1992

                                                                        
Query: 482  ccattgtagtgcaacgatgctgaagttcggataacttcttcttcaattccatagtgatag 541
            |||||||||||||| | ||| ||| | ||   ||| ||||| |||||| |||| | ||| 
Sbjct: 1991 ccattgtagtgcaatgctgcagaactccgtgcaacgtcttcatcaattgcataatcatat 1932

                                                  
Query: 542  ccaagcccagataaagtcaacctctcatcaaggggata 579
            ||||| ||||||| | ||||||||||||||||||||||
Sbjct: 1931 ccaagtccagatagaatcaacctctcatcaaggggata 1894

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>gb|AY111892.1| Zea mays CL34424_1 mRNA sequence
          Length = 674

 Score =  113 bits (57), Expect = 8e-22
 Identities = 105/121 (86%)
 Strand = Plus / Minus

                                                                       
Query: 381 ttacattgcactcgtccatgaatcgctcatctcgtgccagaaacctcttccagtacttcc 440
           |||| |||||||||||||| ||||| ||  ||||  | ||||||||||||||||||||| 
Sbjct: 327 ttacgttgcactcgtccataaatcgatctcctcggtcaagaaacctcttccagtacttct 268

                                                                       
Query: 441 tgtaatttggtatacccaattcaagccaaggtttcatattaccattgtagtgcaacgatg 500
           |||| |  |||||||| |||||||||||||||||||| || |||||||||||||| ||||
Sbjct: 267 tgtagtccggtatacctaattcaagccaaggtttcatgttgccattgtagtgcaatgatg 208

            
Query: 501 c 501
           |
Sbjct: 207 c 207

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>gb|AC132215.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
           OSJNBa0076E06, from chromosome 3, complete sequence
          Length = 126323

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                            
Query: 602 aagcttataggtaaagctgcagctcgcagtgaggcctcatcatcattgt 650
           |||||||| || |||||||||||||||| ||| || |||||||||||||
Sbjct: 1   aagcttattggcaaagctgcagctcgcactgaagcttcatcatcattgt 49

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>gb|AC155890.2| Medicago truncatula chromosome 7 BAC clone mth2-49p3, complete sequence
          Length = 127058

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                 
Query: 441   tgtaatttggtatacccaattcaagccaaggtttcatattaccattgtagtg 492
             |||||||||| || ||||  ||||||||||||||||| || |||||||||||
Sbjct: 32958 tgtaatttggaattcccagatcaagccaaggtttcattttcccattgtagtg 33009

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>gb|BT014535.1| Lycopersicon esculentum clone 133949R, mRNA sequence
          Length = 3004

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 455  cccaattcaagccaaggtttcatattaccatt 486
            ||||| ||||||||||||||||| ||||||||
Sbjct: 2231 cccaactcaagccaaggtttcatgttaccatt 2200

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 461      tcaagccaaggtttcatattaccattgtagtg 492
                |||||||| ||||||| |||||||||||||||
Sbjct: 18390143 tcaagccagggtttcagattaccattgtagtg 18390112

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>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0463G11
          Length = 154188

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 461    tcaagccaaggtttcatattaccattgtagtg 492
              |||||||| ||||||| |||||||||||||||
Sbjct: 104879 tcaagccagggtttcagattaccattgtagtg 104848

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>dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0463D04
          Length = 145828

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 461   tcaagccaaggtttcatattaccattgtagtg 492
             |||||||| ||||||| |||||||||||||||
Sbjct: 52017 tcaagccagggtttcagattaccattgtagtg 51986

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>dbj|AK100641.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110G15, full
            insert sequence
          Length = 2535

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 461  tcaagccaaggtttcatattaccattgtagtg 492
            |||||||| ||||||| |||||||||||||||
Sbjct: 2190 tcaagccagggtttcagattaccattgtagtg 2159

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>ref|XM_468666.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2282

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 464  agccaaggtttcatattaccattgtagtgca 494
            ||||| ||||||||||| |||||||||||||
Sbjct: 1677 agccatggtttcatattcccattgtagtgca 1647

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>gb|AC120529.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0039N21, complete sequence
          Length = 151732

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 464   agccaaggtttcatattaccattgtagtgca 494
             ||||| ||||||||||| |||||||||||||
Sbjct: 65055 agccatggtttcatattcccattgtagtgca 65085

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>gb|AC123519.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0017B18, complete sequence
          Length = 150279

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                        
Query: 450   gtatacccaattcaagccaaggtttcatattaccattgtagtg 492
             |||| ||||| |||||||||||||||||   ||||||||||||
Sbjct: 33859 gtatgcccaaatcaagccaaggtttcatgacaccattgtagtg 33901

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                          
Query: 450     gtatacccaattcaagccaaggtttcatattaccattgtagtg 492
               |||| ||||| |||||||||||||||||   ||||||||||||
Sbjct: 1069690 gtatgcccaaatcaagccaaggtttcatgacaccattgtagtg 1069732

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                          
Query: 450     gtatacccaattcaagccaaggtttcatattaccattgtagtg 492
               |||| ||||| |||||||||||||||||   ||||||||||||
Sbjct: 1138053 gtatgcccaaatcaagccaaggtttcatgacaccattgtagtg 1138095

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>dbj|AK105411.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-G06, full
            insert sequence
          Length = 2799

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 450  gtatacccaattcaagccaaggtttcatattaccattgtagtg 492
            |||| ||||| |||||||||||||||||   ||||||||||||
Sbjct: 2096 gtatgcccaaatcaagccaaggtttcatgacaccattgtagtg 2054

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>dbj|AK100228.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048J06, full
            insert sequence
          Length = 2280

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 464  agccaaggtttcatattaccattgtagtgca 494
            ||||| ||||||||||| |||||||||||||
Sbjct: 1675 agccatggtttcatattcccattgtagtgca 1645

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                          
Query: 450     gtatacccaattcaagccaaggtttcatattaccattgtagtg 492
               |||| ||||| |||||||||||||||||   ||||||||||||
Sbjct: 1135774 gtatgcccaaatcaagccaaggtttcatgacaccattgtagtg 1135816

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                          
Query: 450     gtatacccaattcaagccaaggtttcatattaccattgtagtg 492
               |||| ||||| |||||||||||||||||   ||||||||||||
Sbjct: 1069690 gtatgcccaaatcaagccaaggtttcatgacaccattgtagtg 1069732

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>emb|BX000506.4|CNS08CDW Oryza sativa chromosome 12, . BAC OJ1311_G04 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 97056

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                        
Query: 450   gtatacccaattcaagccaaggtttcatattaccattgtagtg 492
             |||| ||||| |||||||||||||||||   ||||||||||||
Sbjct: 64961 gtatgcccaaatcaagccaaggtttcatgacaccattgtagtg 65003

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>emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 126974

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                       
Query: 450  gtatacccaattcaagccaaggtttcatattaccattgtagtg 492
            |||| ||||| |||||||||||||||||   ||||||||||||
Sbjct: 8673 gtatgcccaaatcaagccaaggtttcatgacaccattgtagtg 8715

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>gb|AC114583.7| Mus musculus chromosome 1, clone RP23-195A24, complete sequence
          Length = 227529

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 197   tcaagctcactaattcaatgaacaga 222
             |||||||||| |||||||||||||||
Sbjct: 92047 tcaagctcaccaattcaatgaacaga 92072

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>gb|AC111028.10| Mus musculus chromosome 8, clone RP23-221P20, complete sequence
          Length = 193256

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 177    aactgcagaaaaaacatccatcaag 201
              |||||||||||||| ||||||||||
Sbjct: 123328 aactgcagaaaaaaaatccatcaag 123304

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>gb|AC169370.4| Sorghum bicolor clone SB_BBc0011I20, complete sequence
          Length = 135209

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 450   gtatacccaattcaagccaaggtttcatattaccattgtagtgca 494
             |||| ||||| |||||||||||||||||   |||||| |||||||
Sbjct: 77692 gtatccccaagtcaagccaaggtttcatcacaccattatagtgca 77648

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>ref|NM_125532.3| Arabidopsis thaliana exonuclease AT5G61390 mRNA, complete cds
          Length = 1691

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 349 tctggtttccaggtccaaagtatg 372
           ||||||||||| ||||||||||||
Sbjct: 583 tctggtttccaagtccaaagtatg 560

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>gb|AC112361.5| Rattus norvegicus 9 BAC CH230-61F12 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 216648

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 159    cttaacactaatttctctaa 178
              ||||||||||||||||||||
Sbjct: 165601 cttaacactaatttctctaa 165582

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>ref|XM_651191.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (15.t00019)
            partial mRNA
          Length = 1458

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 512  ataacttcttcttcaattcc 531
            ||||||||||||||||||||
Sbjct: 1049 ataacttcttcttcaattcc 1030

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>gb|AC146745.20| Medicago truncatula clone mth2-53p19, complete sequence
          Length = 121952

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 467    caaggtttcatattaccatt 486
              ||||||||||||||||||||
Sbjct: 103551 caaggtttcatattaccatt 103532

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>gb|AC149637.11| Medicago truncatula clone mth2-181h2, complete sequence
          Length = 116616

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 467   caaggtttcatattaccatt 486
             ||||||||||||||||||||
Sbjct: 25052 caaggtttcatattaccatt 25033

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>emb|AL731853.9| Mouse DNA sequence from clone RP23-128G5 on chromosome 11 Contains the
             5' end of the Osbp2 gene for oxysterol binding protein 2,
             a novel pseudogene, two novel genes, the Dusp18 gene for
             dual specificity phosphatase 18 and five CpG islands,
             complete sequence
          Length = 205509

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 580   tacaagattctggaaggaaa 599
             ||||||||||||||||||||
Sbjct: 98383 tacaagattctggaaggaaa 98402

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>gb|AF332597.1|AF332597 Clarias gariepinus male-specific DNA marker CgaY1, complete
           sequence
          Length = 2584

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 210 ttcaatgaacagatggtgtt 229
           ||||||||||||||||||||
Sbjct: 461 ttcaatgaacagatggtgtt 442

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>emb|BX830408.1|CNS0A1G9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB79ZD01 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1623

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 349 tctggtttccaggtccaaagtatg 372
           ||||||||||| ||||||||||||
Sbjct: 522 tctggtttccaagtccaaagtatg 499

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>emb|BX829924.1|CNS0A1FO Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB46ZD08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1598

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 349 tctggtttccaggtccaaagtatg 372
           ||||||||||| ||||||||||||
Sbjct: 501 tctggtttccaagtccaaagtatg 478

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>emb|BX829833.1|CNS0A17O Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB3ZE05 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1653

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 349 tctggtttccaggtccaaagtatg 372
           ||||||||||| ||||||||||||
Sbjct: 583 tctggtttccaagtccaaagtatg 560

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>gb|AC156799.2| Mus musculus BAC clone RP23-341L15 from chromosome 9, complete sequence
          Length = 214455

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 182    cagaaaaaacatccatcaag 201
              ||||||||||||||||||||
Sbjct: 104680 cagaaaaaacatccatcaag 104699

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>gb|AC024255.22|AC024255 Homo sapiens 12 BAC RP11-31A23 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 165236

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 99   tcccttttacctgaagcctcacca 122
            ||||||||||||||| ||||||||
Sbjct: 6456 tcccttttacctgaaacctcacca 6433

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>emb|BX324159.6| Zebrafish DNA sequence from clone CH211-10O1 in linkage group 21,
             complete sequence
          Length = 178610

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 364   caaagtatgctatggacttacatt 387
             ||||||||||| ||||||||||||
Sbjct: 27658 caaagtatgctttggacttacatt 27681

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>dbj|AB010073.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFB13
          Length = 80376

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 349   tctggtttccaggtccaaagtatg 372
             ||||||||||| ||||||||||||
Sbjct: 50619 tctggtttccaagtccaaagtatg 50642

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>emb|AJ276420.1|CAR276420 Cicer arietinum mRNA for 68 kDa protein
          Length = 2376

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 473  ttcatattaccattgtagtg 492
            ||||||||||||||||||||
Sbjct: 1884 ttcatattaccattgtagtg 1865

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>gb|AC152923.2| Mus musculus BAC clone RP24-267O6 from 5, complete sequence
          Length = 187438

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 267    ttcctggtcttttcactgaa 286
              ||||||||||||||||||||
Sbjct: 143125 ttcctggtcttttcactgaa 143106


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,589,591
Number of Sequences: 3902068
Number of extensions: 5589591
Number of successful extensions: 101412
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101001
Number of HSP's gapped (non-prelim): 398
length of query: 663
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 640
effective length of database: 17,143,297,704
effective search space: 10971710530560
effective search space used: 10971710530560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result