Clone Information

BLAST Search Result

Clone Name	rbags7a22
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|AJ890139.1\| Triticum turgidum subsp. durum mRNA for dehydrin...	484	e-133
2	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	226	5e-56
3	dbj\|AP002902.2\| Oryza sativa (japonica cultivar-group) genomic D...	226	5e-56
4	dbj\|AP002900.2\| Oryza sativa (japonica cultivar-group) genomic D...	226	5e-56
5	dbj\|AK063645.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	226	5e-56
6	ref\|NM_188551.1\| Oryza sativa (japonica cultivar-group), predic...	224	2e-55
7	ref\|XM_475961.1\| Oryza sativa (japonica cultivar-group), predic...	82	2e-12
8	gb\|AC137608.2\| Oryza sativa (japonica cultivar-group) chromosome...	82	2e-12
9	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	82	2e-12
10	dbj\|AK066062.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	82	2e-12
11	dbj\|AK061818.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	82	2e-12
12	gb\|AC134929.2\| Oryza sativa (japonica cultivar-group) chromosome...	82	2e-12
13	gb\|AY105938.1\| Zea mays PCO134925 mRNA sequence	80	7e-12
14	gb\|AY823547.1\| Pennisetum glaucum late embryonic abundant-like p...	58	2e-05
15	gb\|AY104771.1\| Zea mays PCO087563 mRNA sequence	54	4e-04
16	ref\|NM_192875.1\| Oryza sativa (japonica cultivar-group), predic...	52	0.002
17	dbj\|AP002744.2\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
18	dbj\|AP002819.1\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
19	gb\|CP000151.1\| Burkholderia sp. 383 chromosome 1, complete sequence	46	0.093
20	ref\|XM_428380.1\| PREDICTED: Gallus gallus similar to WD repeat m...	46	0.093
21	ref\|XM_426791.1\| PREDICTED: Gallus gallus similar to WD repeat m...	46	0.093
22	gb\|CP000086.1\| Burkholderia thailandensis E264 chromosome I, com...	46	0.093
23	gb\|AY301064.1\| Aeromonas salmonicida subsp. salmonicida strain A...	44	0.37
24	dbj\|AP006618.1\| Nocardia farcinica IFM 10152 DNA, complete genome	44	0.37
25	emb\|AJ508384.1\|ASA508384 Aeromonas salmonicida subsp. salmonicid...	44	0.37
26	gb\|L40624.1\|RATSUR Rattus norvegicus sulfonylurea receptor (SUR)...	42	1.5
27	emb\|X97279.1\|RNSULFUR Rattus norvegicus mRNA for sulfonylurea re...	42	1.5
28	gb\|AF039595.1\| Rattus norvegicus sulfonylurea receptor 1B (SUR1)...	42	1.5
29	emb\|AJ511273.1\|RNO511273 Rattus norvegicus mRNA for sulphonylure...	42	1.5
30	emb\|AJ511272.1\|RNO511272 Rattus norvegicus mRNA for sulphonylure...	42	1.5
31	ref\|NM_013039.1\| Rattus norvegicus ATP-binding cassette, sub-fam...	42	1.5
32	dbj\|AB052294.1\| Rattus norvegicus SUR1 mRNA for sulphonylurea re...	42	1.5
33	gb\|CP000081.1\| Leishmania major chromosome 35, complete sequence	40	5.7
34	gb\|AE009031.1\| Agrobacterium tumefaciens str. C58 circular chrom...	40	5.7
35	ref\|XM_838462.1\| Leishmania major strain Friedlin hypothetical p...	40	5.7
36	emb\|AL591787.1\|SME591787 Sinorhizobium meliloti 1021 complete ch...	40	5.7
37	emb\|AL591785.1\|SME591785 Sinorhizobium meliloti 1021 complete ch...	40	5.7
38	emb\|CR555306.1\| Azoarcus sp. EbN1 complete genome	40	5.7
39	gb\|AE017342.1\| Cryptococcus neoformans var. neoformans JEC21 chr...	40	5.7
40	gb\|AE007869.1\| Agrobacterium tumefaciens str. C58, complete genome	40	5.7
41	gb\|CP000250.1\| Rhodopseudomonas palustris HaA2, complete genome	40	5.7
42	gb\|CP000116.1\| Thiobacillus denitrificans ATCC 25259, complete g...	40	5.7
43	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	40	5.7
44	gb\|CP000155.1\| Hahella chejuensis KCTC 2396, complete genome	40	5.7
45	gb\|AC005152.1\|AC005152 Homo sapiens chromosome 17, clone hRPC.10...	40	5.7
46	dbj\|AB034704.1\| Rubrivivax gelatinosus photosynthetic gene clust...	40	5.7

>emb|AJ890139.1| Triticum turgidum subsp. durum mRNA for dehydrin (dhn29b gene)
          Length = 785

 Score =  484 bits (244), Expect = e-133
 Identities = 299/316 (94%), Gaps = 1/316 (0%)
 Strand = Plus / Minus

                                                                       
Query: 110 gggtgcggcggtaagtttagaagaggtcggagagcgtggggagcttgagctcgccggcct 169
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gggtgcggcggtaagtttaaaagaggtcggagagcgtggggagcttgagctcgccggcct 501

                                                                       
Query: 170 tggtgagcggcagcgtgaagttgccgacgatggggaggtcgatggtgaggcctacgcgca 229
           |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 500 tggtgagcggcagcgtgaagttgccgacgatggggaggtcgacggtgaggccgacgcgca 441

                                                                       
Query: 230 tctcgtagtcgaggtcccagtccttcccggcgtccttcatcaggctcacaaggaagtcgt 289
           ||||||||||||||||||||||||| ||||||||||||| ||||||||  ||||||||||
Sbjct: 440 tctcgtagtcgaggtcccagtccttgccggcgtccttcaccaggctcatcaggaagtcgt 381

                                                                       
Query: 290 agggcaccttcacgggtatgtggaggctggttggtgtcgctggccaccagcgaccccggg 349
           | ||||||||||| ||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct: 380 acggcaccttcaccggtatgtcgaggccgg-tggtgtcgctggccaccagcgaccccggg 322

                                                                       
Query: 350 tccggcatcgtcccggaggcgacttcgcggccggcgctcttgagggagtagctgatctcg 409
           |||||||| ||||||||||| || |||||||||||||| |||| ||||||||||||||||
Sbjct: 321 tccggcatggtcccggaggccacgtcgcggccggcgcttttgaaggagtagctgatctcg 262

                           
Query: 410 cagatggggatggtgt 425
           ||||||||||||||||
Sbjct: 261 cagatggggatggtgt 246



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 39/39 (100%)
 Strand = Plus / Minus

                                                  
Query: 65  gaagtaaaaacagagctaggtagcgatcgatcgtcccgc 103
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaagtaaaaacagagctaggtagcgatcgatcgtcccgc 643



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 4   gcacacccacaccgtgatcccaagtcaaaacagagcta 41
           |||||||||||||| ||||| |||| ||||||||||||
Sbjct: 701 gcacacccacaccgcgatccgaagtaaaaacagagcta 664

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  226 bits (114), Expect = 5e-56
 Identities = 253/298 (84%), Gaps = 1/298 (0%)
 Strand = Plus / Plus

                                                                           
Query: 125     tttagaagaggtcggagagcgtggggagcttgagctcgccggccttggtgagcggcagcg 184
               ||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||| |
Sbjct: 6921231 tttagaagacgtcggagagggtggggagcttgagctcgccggacttggtgagcggcaggg 6921290

                                                                           
Query: 185     tgaagttgccgacgatggggaggtcgatggtgaggcctacgcgcatctcgtagtcgaggt 244
               |||||||||||| |||||||||||||| ||||||||| || | |||||||||||||| ||
Sbjct: 6921291 tgaagttgccgaggatggggaggtcgacggtgaggccgaccctcatctcgtagtcgatgt 6921350

                                                                           
Query: 245     cccagtccttcccggcgtccttcatcaggctcacaaggaagtcgtagggcaccttcacgg 304
               |||||||| | ||||||||| |    |||||||| ||||||||||| ||||||||||| |
Sbjct: 6921351 cccagtccctgccggcgtccctggcgaggctcaccaggaagtcgtacggcaccttcaccg 6921410

                                                                           
Query: 305     gtatgtggaggctggttggtgtcgctggccaccagcgaccccgggtccggcatcgtcccg 364
               | ||||  | || |  ||||||||| |||    |||||||||||||| ||||||||||| 
Sbjct: 6921411 ggatgtcca-gccgcgtggtgtcgccggcggtgagcgaccccgggtcgggcatcgtcccc 6921469

                                                                         
Query: 365     gaggcgacttcgcggccggcgctcttgagggagtagctgatctcgcagatggggatgg 422
               || || || || |  ||||||||||| || |||||||| | ||||||||| |||||||
Sbjct: 6921470 gacgccacctccctcccggcgctcttcagcgagtagctcacctcgcagatcgggatgg 6921527



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 184      gtgaagttgccgacgatggggaggtcgatggtga 217
                |||||| ||||||||| |||||||||||||||||
Sbjct: 24929618 gtgaagctgccgacgacggggaggtcgatggtga 24929585



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                      
Query: 384      cgctcttgagggagtagctgatctcgcagatggggatg 421
                ||||||||| || |||| ||| ||||||||||||||||
Sbjct: 24929295 cgctcttgaaggtgtaggtgagctcgcagatggggatg 24929258

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>dbj|AP002902.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0492F05
          Length = 159242

 Score =  226 bits (114), Expect = 5e-56
 Identities = 253/298 (84%), Gaps = 1/298 (0%)
 Strand = Plus / Plus

                                                                         
Query: 125   tttagaagaggtcggagagcgtggggagcttgagctcgccggccttggtgagcggcagcg 184
             ||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||| |
Sbjct: 88955 tttagaagacgtcggagagggtggggagcttgagctcgccggacttggtgagcggcaggg 89014

                                                                         
Query: 185   tgaagttgccgacgatggggaggtcgatggtgaggcctacgcgcatctcgtagtcgaggt 244
             |||||||||||| |||||||||||||| ||||||||| || | |||||||||||||| ||
Sbjct: 89015 tgaagttgccgaggatggggaggtcgacggtgaggccgaccctcatctcgtagtcgatgt 89074

                                                                         
Query: 245   cccagtccttcccggcgtccttcatcaggctcacaaggaagtcgtagggcaccttcacgg 304
             |||||||| | ||||||||| |    |||||||| ||||||||||| ||||||||||| |
Sbjct: 89075 cccagtccctgccggcgtccctggcgaggctcaccaggaagtcgtacggcaccttcaccg 89134

                                                                         
Query: 305   gtatgtggaggctggttggtgtcgctggccaccagcgaccccgggtccggcatcgtcccg 364
             | ||||  | || |  ||||||||| |||    |||||||||||||| ||||||||||| 
Sbjct: 89135 ggatgtcca-gccgcgtggtgtcgccggcggtgagcgaccccgggtcgggcatcgtcccc 89193

                                                                       
Query: 365   gaggcgacttcgcggccggcgctcttgagggagtagctgatctcgcagatggggatgg 422
             || || || || |  ||||||||||| || |||||||| | ||||||||| |||||||
Sbjct: 89194 gacgccacctccctcccggcgctcttcagcgagtagctcacctcgcagatcgggatgg 89251

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>dbj|AP002900.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0443E07
          Length = 159440

 Score =  226 bits (114), Expect = 5e-56
 Identities = 253/298 (84%), Gaps = 1/298 (0%)
 Strand = Plus / Plus

                                                                         
Query: 125   tttagaagaggtcggagagcgtggggagcttgagctcgccggccttggtgagcggcagcg 184
             ||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||| |
Sbjct: 43049 tttagaagacgtcggagagggtggggagcttgagctcgccggacttggtgagcggcaggg 43108

                                                                         
Query: 185   tgaagttgccgacgatggggaggtcgatggtgaggcctacgcgcatctcgtagtcgaggt 244
             |||||||||||| |||||||||||||| ||||||||| || | |||||||||||||| ||
Sbjct: 43109 tgaagttgccgaggatggggaggtcgacggtgaggccgaccctcatctcgtagtcgatgt 43168

                                                                         
Query: 245   cccagtccttcccggcgtccttcatcaggctcacaaggaagtcgtagggcaccttcacgg 304
             |||||||| | ||||||||| |    |||||||| ||||||||||| ||||||||||| |
Sbjct: 43169 cccagtccctgccggcgtccctggcgaggctcaccaggaagtcgtacggcaccttcaccg 43228

                                                                         
Query: 305   gtatgtggaggctggttggtgtcgctggccaccagcgaccccgggtccggcatcgtcccg 364
             | ||||  | || |  ||||||||| |||    |||||||||||||| ||||||||||| 
Sbjct: 43229 ggatgtcca-gccgcgtggtgtcgccggcggtgagcgaccccgggtcgggcatcgtcccc 43287

                                                                       
Query: 365   gaggcgacttcgcggccggcgctcttgagggagtagctgatctcgcagatggggatgg 422
             || || || || |  ||||||||||| || |||||||| | ||||||||| |||||||
Sbjct: 43288 gacgccacctccctcccggcgctcttcagcgagtagctcacctcgcagatcgggatgg 43345

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>dbj|AK063645.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-H06, full
           insert sequence
          Length = 745

 Score =  226 bits (114), Expect = 5e-56
 Identities = 253/298 (84%), Gaps = 1/298 (0%)
 Strand = Plus / Minus

                                                                       
Query: 125 tttagaagaggtcggagagcgtggggagcttgagctcgccggccttggtgagcggcagcg 184
           ||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||| |
Sbjct: 654 tttagaagacgtcggagagggtggggagcttgagctcgccggacttggtgagcggcaggg 595

                                                                       
Query: 185 tgaagttgccgacgatggggaggtcgatggtgaggcctacgcgcatctcgtagtcgaggt 244
           |||||||||||| |||||||||||||| ||||||||| || | |||||||||||||| ||
Sbjct: 594 tgaagttgccgaggatggggaggtcgacggtgaggccgaccctcatctcgtagtcgatgt 535

                                                                       
Query: 245 cccagtccttcccggcgtccttcatcaggctcacaaggaagtcgtagggcaccttcacgg 304
           |||||||| | ||||||||| |    |||||||| ||||||||||| ||||||||||| |
Sbjct: 534 cccagtccctgccggcgtccctggcgaggctcaccaggaagtcgtacggcaccttcaccg 475

                                                                       
Query: 305 gtatgtggaggctggttggtgtcgctggccaccagcgaccccgggtccggcatcgtcccg 364
           | ||||  | || |  ||||||||| |||    |||||||||||||| ||||||||||| 
Sbjct: 474 ggatgtcca-gccgcgtggtgtcgccggcggtgagcgaccccgggtcgggcatcgtcccc 416

                                                                     
Query: 365 gaggcgacttcgcggccggcgctcttgagggagtagctgatctcgcagatggggatgg 422
           || || || || |  ||||||||||| || |||||||| | ||||||||| |||||||
Sbjct: 415 gacgccacctccctcccggcgctcttcagcgagtagctcacctcgcagatcgggatgg 358

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>ref|NM_188551.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 456

 Score =  224 bits (113), Expect = 2e-55
 Identities = 252/297 (84%), Gaps = 1/297 (0%)
 Strand = Plus / Minus

                                                                       
Query: 126 ttagaagaggtcggagagcgtggggagcttgagctcgccggccttggtgagcggcagcgt 185
           |||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 456 ttagaagacgtcggagagggtggggagcttgagctcgccggacttggtgagcggcagggt 397

                                                                       
Query: 186 gaagttgccgacgatggggaggtcgatggtgaggcctacgcgcatctcgtagtcgaggtc 245
           ||||||||||| |||||||||||||| ||||||||| || | |||||||||||||| |||
Sbjct: 396 gaagttgccgaggatggggaggtcgacggtgaggccgaccctcatctcgtagtcgatgtc 337

                                                                       
Query: 246 ccagtccttcccggcgtccttcatcaggctcacaaggaagtcgtagggcaccttcacggg 305
           ||||||| | ||||||||| |    |||||||| ||||||||||| ||||||||||| ||
Sbjct: 336 ccagtccctgccggcgtccctggcgaggctcaccaggaagtcgtacggcaccttcaccgg 277

                                                                       
Query: 306 tatgtggaggctggttggtgtcgctggccaccagcgaccccgggtccggcatcgtcccgg 365
            ||||  | || |  ||||||||| |||    |||||||||||||| ||||||||||| |
Sbjct: 276 gatgtcca-gccgcgtggtgtcgccggcggtgagcgaccccgggtcgggcatcgtccccg 218

                                                                    
Query: 366 aggcgacttcgcggccggcgctcttgagggagtagctgatctcgcagatggggatgg 422
           | || || || |  ||||||||||| || |||||||| | ||||||||| |||||||
Sbjct: 217 acgccacctccctcccggcgctcttcagcgagtagctcacctcgcagatcgggatgg 161

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>ref|XM_475961.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 456

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                       
Query: 184 gtgaagttgccgacgatggggaggtcgatggtgaggcctacgcgcatctcgtagtcgagg 243
           |||||||||||||||||||||||||||||||||||||| |||   | || |||||||| |
Sbjct: 398 gtgaagttgccgacgatggggaggtcgatggtgaggccgacgtcgagctggtagtcgatg 339

                    
Query: 244 tcccagtcc 252
           |||||||||
Sbjct: 338 tcccagtcc 330



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                       
Query: 342 accccgggtccggcatcgtcccggaggcgacttcgcggccggcgctcttgagggagtagc 401
           ||||||| || |||||||| ||||| || ||  ||  |||||||| |||||||| |||| 
Sbjct: 241 accccggatcgggcatcgtgccggacgccacaacgttgccggcgcacttgagggtgtagg 182

                             
Query: 402 tgatctcgcagatgggga 419
           ||| ||||||||||||||
Sbjct: 181 tgagctcgcagatgggga 164

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>gb|AC137608.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBa0009C07, complete sequence
          Length = 148731

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                        
Query: 184  gtgaagttgccgacgatggggaggtcgatggtgaggcctacgcgcatctcgtagtcgagg 243
            |||||||||||||||||||||||||||||||||||||| |||   | || |||||||| |
Sbjct: 3538 gtgaagttgccgacgatggggaggtcgatggtgaggccgacgtcgagctggtagtcgatg 3597

                     
Query: 244  tcccagtcc 252
            |||||||||
Sbjct: 3598 tcccagtcc 3606



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                     
Query: 379  gccggcgctcttgagggagtagctgatctcgcagatgggga 419
            |||||||| |||||||| |||| ||| ||||||||||||||
Sbjct: 3844 gccggcgcacttgagggtgtaggtgagctcgcagatgggga 3884

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                            
Query: 184      gtgaagttgccgacgatggggaggtcgatggtgaggcctacgcgcatctcgtagtcgagg 243
                |||||||||||||||||||||||||||||||||||||| |||   | || |||||||| |
Sbjct: 28849245 gtgaagttgccgacgatggggaggtcgatggtgaggccgacgtcgagctggtagtcgatg 28849304

                         
Query: 244      tcccagtcc 252
                |||||||||
Sbjct: 28849305 tcccagtcc 28849313



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                         
Query: 379      gccggcgctcttgagggagtagctgatctcgcagatgggga 419
                |||||||| |||||||| |||| ||| ||||||||||||||
Sbjct: 28849551 gccggcgcacttgagggtgtaggtgagctcgcagatgggga 28849591

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>dbj|AK066062.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050C18, full
           insert sequence
          Length = 947

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                       
Query: 184 gtgaagttgccgacgatggggaggtcgatggtgaggcctacgcgcatctcgtagtcgagg 243
           |||||||||||||||||||||||||||||||||||||| |||   | || |||||||| |
Sbjct: 700 gtgaagttgccgacgatggggaggtcgatggtgaggccgacgtcgagctggtagtcgatg 641

                    
Query: 244 tcccagtcc 252
           |||||||||
Sbjct: 640 tcccagtcc 632



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                       
Query: 342 accccgggtccggcatcgtcccggaggcgacttcgcggccggcgctcttgagggagtagc 401
           ||||||| || |||||||| ||||| || ||  ||  |||||||| |||||||| |||| 
Sbjct: 543 accccggatcgggcatcgtgccggacgccacaacgttgccggcgcacttgagggtgtagg 484

                             
Query: 402 tgatctcgcagatgggga 419
           ||| ||||||||||||||
Sbjct: 483 tgagctcgcagatgggga 466

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>dbj|AK061818.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-B08, full
           insert sequence
          Length = 1125

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                       
Query: 184 gtgaagttgccgacgatggggaggtcgatggtgaggcctacgcgcatctcgtagtcgagg 243
           |||||||||||||||||||||||||||||||||||||| |||   | || |||||||| |
Sbjct: 878 gtgaagttgccgacgatggggaggtcgatggtgaggccgacgtcgagctggtagtcgatg 819

                    
Query: 244 tcccagtcc 252
           |||||||||
Sbjct: 818 tcccagtcc 810



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                       
Query: 342 accccgggtccggcatcgtcccggaggcgacttcgcggccggcgctcttgagggagtagc 401
           ||||||| || |||||||| ||||| || ||  ||  |||||||| |||||||| |||| 
Sbjct: 721 accccggatcgggcatcgtgccggacgccacaacgttgccggcgcacttgagggtgtagg 662

                             
Query: 402 tgatctcgcagatgggga 419
           ||| ||||||||||||||
Sbjct: 661 tgagctcgcagatgggga 644

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>gb|AC134929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0035N21, complete sequence
          Length = 128331

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                         
Query: 184   gtgaagttgccgacgatggggaggtcgatggtgaggcctacgcgcatctcgtagtcgagg 243
             |||||||||||||||||||||||||||||||||||||| |||   | || |||||||| |
Sbjct: 24223 gtgaagttgccgacgatggggaggtcgatggtgaggccgacgtcgagctggtagtcgatg 24164

                      
Query: 244   tcccagtcc 252
             |||||||||
Sbjct: 24163 tcccagtcc 24155



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 379   gccggcgctcttgagggagtagctgatctcgcagatgggga 419
             |||||||| |||||||| |||| ||| ||||||||||||||
Sbjct: 23917 gccggcgcacttgagggtgtaggtgagctcgcagatgggga 23877

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>gb|AY105938.1| Zea mays PCO134925 mRNA sequence
          Length = 913

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 91/108 (84%)
 Strand = Plus / Minus

                                                                       
Query: 145 gtggggagcttgagctcgccggccttggtgagcggcagcgtgaagttgccgacgatgggg 204
           ||||||||||||| |||||| |   ||| |||||| |  |||||||||||||||||||||
Sbjct: 675 gtggggagcttgaactcgccagaggtggagagcgggatggtgaagttgccgacgatgggg 616

                                                           
Query: 205 aggtcgatggtgaggcctacgcgcatctcgtagtcgaggtcccagtcc 252
           ||||||| |||||| || ||  | | ||||||||||| ||||||||||
Sbjct: 615 aggtcgacggtgagcccgacctggagctcgtagtcgatgtcccagtcc 568

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>gb|AY823547.1| Pennisetum glaucum late embryonic abundant-like protein mRNA,
           complete cds
          Length = 670

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 57/65 (87%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                       
Query: 184 gtgaagttgccgacgatggggaggtcgatggtgaggcctacgcgcatctcgtagtcgagg 243
           |||||||||||||||||||||| |||||||||||| || ||  | | ||||||||||| |
Sbjct: 529 gtgaagttgccgacgatgggga-gtcgatggtgagccccacctggagctcgtagtcgatg 471

                
Query: 244 tccca 248
           |||||
Sbjct: 470 tccca 466



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 380 ccggcgctcttgagggagtagctgatctcgcagatgggga 419
           ||||||| |||||||| |||| ||| ||||||||||||||
Sbjct: 334 ccggcgcacttgagggtgtaggtgacctcgcagatgggga 295



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 280 aggaagtcgtagggcacctt 299
           ||||||||||||||||||||
Sbjct: 433 aggaagtcgtagggcacctt 414

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>gb|AY104771.1| Zea mays PCO087563 mRNA sequence
          Length = 629

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 379 gccggcgctcttgagggagtagctgatctcgcagatggggatg 421
           ||||||||||||||  | |||| ||||||||||||||||||||
Sbjct: 483 gccggcgctcttgaacgtgtaggtgatctcgcagatggggatg 441



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 57/69 (82%)
 Strand = Plus / Minus

                                                                       
Query: 234 gtagtcgaggtcccagtccttcccggcgtccttcatcaggctcacaaggaagtcgtaggg 293
           |||||||| |||||||||| | |||   |||||||||||   ||| | ||||||||| ||
Sbjct: 627 gtagtcgatgtcccagtcccttccgagatccttcatcagcgacacgatgaagtcgtacgg 568

                    
Query: 294 caccttcac 302
           |||||||||
Sbjct: 567 caccttcac 559

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>ref|NM_192875.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 543

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 184 gtgaagttgccgacgatggggaggtcgatggtga 217
           |||||| ||||||||| |||||||||||||||||
Sbjct: 482 gtgaagctgccgacgacggggaggtcgatggtga 449



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 384 cgctcttgagggagtagctgatctcgcagatggggatg 421
           ||||||||| || |||| ||| ||||||||||||||||
Sbjct: 283 cgctcttgaaggtgtaggtgagctcgcagatggggatg 246

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>dbj|AP002744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0006C01
          Length = 153865

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 184  gtgaagttgccgacgatggggaggtcgatggtga 217
            |||||| ||||||||| |||||||||||||||||
Sbjct: 2141 gtgaagctgccgacgacggggaggtcgatggtga 2108



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 384  cgctcttgagggagtagctgatctcgcagatggggatg 421
            ||||||||| || |||| ||| ||||||||||||||||
Sbjct: 1818 cgctcttgaaggtgtaggtgagctcgcagatggggatg 1781

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>dbj|AP002819.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0501G01
          Length = 154561

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                
Query: 184    gtgaagttgccgacgatggggaggtcgatggtga 217
              |||||| ||||||||| |||||||||||||||||
Sbjct: 152738 gtgaagctgccgacgacggggaggtcgatggtga 152705



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 384    cgctcttgagggagtagctgatctcgcagatggggatg 421
              ||||||||| || |||| ||| ||||||||||||||||
Sbjct: 152415 cgctcttgaaggtgtaggtgagctcgcagatggggatg 152378

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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 174     gagcggcagcgtgaagttgccga 196
               |||||||||||||||||||||||
Sbjct: 2161550 gagcggcagcgtgaagttgccga 2161572

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>ref|XM_428380.1| PREDICTED: Gallus gallus similar to WD repeat membrane protein
           (LOC430829), partial mRNA
          Length = 4794

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 139 gagagcgtggggagcttgagctcgccg 165
           |||||||||||||||| ||||||||||
Sbjct: 303 gagagcgtggggagctggagctcgccg 329

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>ref|XM_426791.1| PREDICTED: Gallus gallus similar to WD repeat membrane protein
           PWDMP (LOC429235), partial mRNA
          Length = 1068

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 139 gagagcgtggggagcttgagctcgccg 165
           |||||||||||||||| ||||||||||
Sbjct: 294 gagagcgtggggagctggagctcgccg 320

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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 174     gagcggcagcgtgaagttgccga 196
               |||||||||||||||||||||||
Sbjct: 2506678 gagcggcagcgtgaagttgccga 2506656

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>gb|AY301064.1| Aeromonas salmonicida subsp. salmonicida strain A449 plasmid pAsa2,
            complete sequence
          Length = 5247

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 138  ggagagcgtggggagcttgagc 159
            ||||||||||||||||||||||
Sbjct: 5083 ggagagcgtggggagcttgagc 5104

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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 364     ggaggcgacttcgcggccggcg 385
               ||||||||||||||||||||||
Sbjct: 3114613 ggaggcgacttcgcggccggcg 3114592

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>emb|AJ508384.1|ASA508384 Aeromonas salmonicida subsp. salmonicida pAsal3 plasmid
          Length = 5249

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 138  ggagagcgtggggagcttgagc 159
            ||||||||||||||||||||||
Sbjct: 4562 ggagagcgtggggagcttgagc 4583

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>gb|L40624.1|RATSUR Rattus norvegicus sulfonylurea receptor (SUR) mRNA, complete cds
          Length = 5099

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 315  gctggttggtgtcgctggccaccag 339
            |||||||||||||| ||||||||||
Sbjct: 1541 gctggttggtgtcgatggccaccag 1517

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>emb|X97279.1|RNSULFUR Rattus norvegicus mRNA for sulfonylurea receptor
          Length = 4749

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 315  gctggttggtgtcgctggccaccag 339
            |||||||||||||| ||||||||||
Sbjct: 1282 gctggttggtgtcgatggccaccag 1258

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>gb|AF039595.1| Rattus norvegicus sulfonylurea receptor 1B (SUR1) mRNA, complete cds
          Length = 4635

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 315  gctggttggtgtcgctggccaccag 339
            |||||||||||||| ||||||||||
Sbjct: 1282 gctggttggtgtcgatggccaccag 1258

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>emb|AJ511273.1|RNO511273 Rattus norvegicus mRNA for sulphonylurea receptor 1 (sur1 gene),
            isoform E
          Length = 4728

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 315  gctggttggtgtcgctggccaccag 339
            |||||||||||||| ||||||||||
Sbjct: 1261 gctggttggtgtcgatggccaccag 1237

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>emb|AJ511272.1|RNO511272 Rattus norvegicus mRNA for sulphonylurea receptor 1 (sur1 gene),
            isoform D
          Length = 4671

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 315  gctggttggtgtcgctggccaccag 339
            |||||||||||||| ||||||||||
Sbjct: 1204 gctggttggtgtcgatggccaccag 1180

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>ref|NM_013039.1| Rattus norvegicus ATP-binding cassette, sub-family C (CFTR/MRP),
            member 8 (Abcc8), mRNA
          Length = 5099

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 315  gctggttggtgtcgctggccaccag 339
            |||||||||||||| ||||||||||
Sbjct: 1541 gctggttggtgtcgatggccaccag 1517

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>dbj|AB052294.1| Rattus norvegicus SUR1 mRNA for sulphonylurea receptor 1, complete
            cds
          Length = 4780

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 315  gctggttggtgtcgctggccaccag 339
            |||||||||||||| ||||||||||
Sbjct: 1297 gctggttggtgtcgatggccaccag 1273

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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 378     ggccggcgctcttgagggag 397
               ||||||||||||||||||||
Sbjct: 1798961 ggccggcgctcttgagggag 1798942

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>gb|AE009031.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 57 of
             256 of the complete sequence
          Length = 11123

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   ccggcgtccttcatcaggct 275
             ||||||||||||||||||||
Sbjct: 10081 ccggcgtccttcatcaggct 10062

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>ref|XM_838462.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1380)
           partial mRNA
          Length = 4464

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 378 ggccggcgctcttgagggag 397
           ||||||||||||||||||||
Sbjct: 418 ggccggcgctcttgagggag 399

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>emb|AL591787.1|SME591787 Sinorhizobium meliloti 1021 complete chromosome; segment 6/12
          Length = 329100

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 227    gcatctcgtagtcgaggtcc 246
              ||||||||||||||||||||
Sbjct: 267276 gcatctcgtagtcgaggtcc 267257

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>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12
          Length = 286550

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   ccggcgtccttcatcaggct 275
             ||||||||||||||||||||
Sbjct: 62149 ccggcgtccttcatcaggct 62130

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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 147     ggggagcttgagctcgccgg 166
               ||||||||||||||||||||
Sbjct: 1234459 ggggagcttgagctcgccgg 1234478

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>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete
              sequence
          Length = 1632307

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 195    gacgatggggaggtcgatggtgag 218
              ||||||||||||| ||||||||||
Sbjct: 726644 gacgatggggaggacgatggtgag 726667

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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    ccggcgtccttcatcaggct 275
              ||||||||||||||||||||
Sbjct: 623761 ccggcgtccttcatcaggct 623742

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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 100     ccgcccggccgggtgcggcg 119
               ||||||||||||||||||||
Sbjct: 1697506 ccgcccggccgggtgcggcg 1697525

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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 177     cggcagcgtgaagttgccga 196
               ||||||||||||||||||||
Sbjct: 1033974 cggcagcgtgaagttgccga 1033993

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 256     ccggcgtccttcatcaggctcaca 279
               |||||||||||||||||| |||||
Sbjct: 3559130 ccggcgtccttcatcaggttcaca 3559107

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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 320    ttggtgtcgctggccaccagcgac 343
              |||| |||||||||||||||||||
Sbjct: 823917 ttggcgtcgctggccaccagcgac 823894

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>gb|AC005152.1|AC005152 Homo sapiens chromosome 17, clone hRPC.1037_O_7, complete sequence
          Length = 126150

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 264   cttcatcaggctcacaaggaagtc 287
             ||||||||| ||||||||||||||
Sbjct: 20095 cttcatcagtctcacaaggaagtc 20072

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>dbj|AB034704.1| Rubrivivax gelatinosus photosynthetic gene cluster, complete cds,
             stain:IL144
          Length = 58996

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   agcggcagcgtgaagttgcc 194
             ||||||||||||||||||||
Sbjct: 56249 agcggcagcgtgaagttgcc 56230


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,458,134
Number of Sequences: 3902068
Number of extensions: 2458134
Number of successful extensions: 46443
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45746
Number of HSP's gapped (non-prelim): 683
length of query: 427
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 405
effective length of database: 17,147,199,772
effective search space: 6944615907660
effective search space used: 6944615907660
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result