| Clone Name | rbags7a20 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK073696.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033063H10, full insert sequence Length = 1236 Score = 353 bits (178), Expect = 5e-94 Identities = 360/422 (85%), Gaps = 9/422 (2%) Strand = Plus / Minus Query: 287 ttttcattgccgatggccctctgggagcgcaaccactctgtaaaatggaacagctctctc 346 |||||| ||||| |||||||| ||||| | ||||||||| || || || |||||||| | Sbjct: 1016 ttttcactgccggtggccctccgggagaggaaccactctatagaacggcacagctctttg 957 Query: 347 tggtagattcccatcctcttcgtcatcatcaaataagagattgtaatcatcagatttcct 406 ||||||||| |||||||| |||||||||||||| ||||| ||||| ||||||||||| Sbjct: 956 tggtagatttccatcctcctcgtcatcatcaaacaagagtagataatcgtcagatttcct 897 Query: 407 cttacgatgagaggctacggtggccctatatagtgctgttgtgccaggataaacagctaa 466 |||||||| |||||| || || || ||||||||||||||||||| ||||||||||||||| Sbjct: 896 cttacgattagaggcaacagtagctctatatagtgctgttgtgctaggataaacagctaa 837 Query: 467 gacttgccgaccctgtccaaaatcctgagcactagacggatctcctttctttggaaatgg 526 |||||| |||||||| |||||||| | ||||| || ||||| ||| ||||||||||||| Sbjct: 836 gacttgtcgaccctgcccaaaatctggggcactggaaggatcccctctctttggaaatgg 777 Query: 527 aataatatatgacataggtaacttgtacttcctctcaaacttttgggcgctctcttcatc 586 |||||||| ||||||||| ||||||||||| ||||||||| ||||||||||| Sbjct: 776 aataatatctgacataggcaacttgtactt---------cttttgggcactctcttcatc 726 Query: 587 atcaccaggctcctcatccagtacttcaaattcttttgtttccttatcgaaatgtatgac 646 ||||| ||||||||||| ||||| ||| |||||||||||||||||||||||||||| || Sbjct: 725 gtcacctggctcctcatcaagtacctcatattcttttgtttccttatcgaaatgtatcac 666 Query: 647 cttcaccacaaaccactcgtctttttcatcatccgactttaccctcgctgcaacctgctc 706 ||||||||||||||| || |||||||| || || || || ||| | ||||||||||| || Sbjct: 665 cttcaccacaaaccattcatctttttcttcgtctgatttgaccttagctgcaacctgttc 606 Query: 707 tc 708 || Sbjct: 605 tc 604
>gb|BT018456.1| Zea mays clone EL01N0409A08.d mRNA sequence Length = 1170 Score = 252 bits (127), Expect = 1e-63 Identities = 270/319 (84%), Gaps = 9/319 (2%) Strand = Plus / Minus Query: 390 taatcatcagatttcctcttacgatgagaggctacggtggccctatatagtgctgttgtg 449 ||||||||||| ||||||||||||||||| ||||||| || || |||| |||||||||| Sbjct: 816 taatcatcagacttcctcttacgatgagaagctacgggagctctgtataatgctgttgtg 757 Query: 450 ccaggataaacagctaagacttgccgaccctgtccaaaatcctgagcactagacggatct 509 ||||||||||||||||| ||||| |||||||| |||||||| | ||||| || ||||| Sbjct: 756 ccaggataaacagctaaaacttgtcgaccctgcccaaaatctggggcactcgaaggatcc 697 Query: 510 cctttctttggaaatggaataatatatgacataggtaacttgtacttcctctcaaacttt 569 |||||||| |||||||||||||| || |||||||| ||||||||||| |||| Sbjct: 696 cctttcttcggaaatggaataatgtaagacataggcaacttgtactt---------cttt 646 Query: 570 tgggcgctctcttcatcatcaccaggctcctcatccagtacttcaaattcttttgtttcc 629 || | ||||||||| |||||||| || || || || ||||||||| | |||||||| ||| Sbjct: 645 tgagtgctctcttcgtcatcacctggttcttcgtcaagtacttcatactcttttgtctcc 586 Query: 630 ttatcgaaatgtatgaccttcaccacaaaccactcgtctttttcatcatccgactttacc 689 |||||||||| | ||||||||| |||||||||||||||||||| ||||| || |||||| Sbjct: 585 ttatcgaaataaaggaccttcacgacaaaccactcgtctttttcgtcatctgattttacc 526 Query: 690 ctcgctgcaacctgctctc 708 || || ||||||||||||| Sbjct: 525 ctagcagcaacctgctctc 507
>gb|AY106324.1| Zea mays PCO133117 mRNA sequence Length = 711 Score = 228 bits (115), Expect = 2e-56 Identities = 225/263 (85%), Gaps = 9/263 (3%) Strand = Plus / Minus Query: 390 taatcatcagatttcctcttacgatgagaggctacggtggccctatatagtgctgttgtg 449 ||||||||||| ||||||||||||||||| |||||||| || || |||| |||||||||| Sbjct: 274 taatcatcagacttcctcttacgatgagaagctacggtagctctgtataatgctgttgtg 215 Query: 450 ccaggataaacagctaagacttgccgaccctgtccaaaatcctgagcactagacggatct 509 ||||||||||||||||| ||||| |||||||| ||||||||| | ||||| || ||||| Sbjct: 214 ccaggataaacagctaaaacttgtcgaccctgcccaaaatccggggcactcgaaggatcc 155 Query: 510 cctttctttggaaatggaataatatatgacataggtaacttgtacttcctctcaaacttt 569 |||||||| |||||||||||||| || |||||||| ||||||||||| |||| Sbjct: 154 cctttcttcggaaatggaataatgtaagacataggcaacttgtactt---------cttt 104 Query: 570 tgggcgctctcttcatcatcaccaggctcctcatccagtacttcaaattcttttgtttcc 629 || | ||||||||| |||||||| || || || || ||||||||| | |||||||| ||| Sbjct: 103 tgagtgctctcttcgtcatcacctggttcttcgtcaagtacttcatactcttttgtctcc 44 Query: 630 ttatcgaaatgtatgaccttcac 652 ||||||||||||||||||||||| Sbjct: 43 ttatcgaaatgtatgaccttcac 21
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 168 bits (85), Expect = 2e-38 Identities = 136/153 (88%) Strand = Plus / Plus Query: 407 cttacgatgagaggctacggtggccctatatagtgctgttgtgccaggataaacagctaa 466 |||||||| |||||| || || || ||||||||||||||||||| ||||||||||||||| Sbjct: 11221428 cttacgattagaggcaacagtagctctatatagtgctgttgtgctaggataaacagctaa 11221487 Query: 467 gacttgccgaccctgtccaaaatcctgagcactagacggatctcctttctttggaaatgg 526 |||||| |||||||| |||||||| | ||||| || ||||| ||| ||||||||||||| Sbjct: 11221488 gacttgtcgaccctgcccaaaatctggggcactggaaggatcccctctctttggaaatgg 11221547 Query: 527 aataatatatgacataggtaacttgtacttcct 559 |||||||| ||||||||| |||||||||||||| Sbjct: 11221548 aataatatctgacataggcaacttgtacttcct 11221580 Score = 91.7 bits (46), Expect = 3e-15 Identities = 76/86 (88%) Strand = Plus / Plus Query: 618 tcttttgtttccttatcgaaatgtatgaccttcaccacaaaccactcgtctttttcatca 677 |||||||||||||||||||||||||| ||||||||||||||||| || |||||||| || Sbjct: 11224743 tcttttgtttccttatcgaaatgtatcaccttcaccacaaaccattcatctttttcttcg 11224802 Query: 678 tccgactttaccctcgctgcaacctg 703 || || || ||| | ||||||||||| Sbjct: 11224803 tctgatttgaccttagctgcaacctg 11224828 Score = 85.7 bits (43), Expect = 2e-13 Identities = 85/99 (85%) Strand = Plus / Plus Query: 287 ttttcattgccgatggccctctgggagcgcaaccactctgtaaaatggaacagctctctc 346 |||||| ||||| |||||||| ||||| | ||||||||| || || || |||||||| | Sbjct: 11218026 ttttcactgccggtggccctccgggagaggaaccactctatagaacggcacagctctttg 11218085 Query: 347 tggtagattcccatcctcttcgtcatcatcaaataagag 385 ||||||||| |||||||| |||||||||||||| ||||| Sbjct: 11218086 tggtagatttccatcctcctcgtcatcatcaaacaagag 11218124 Score = 63.9 bits (32), Expect = 7e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 559 tctcaaacttttgggcgctctcttcatcatcaccaggctcctcatccagtac 610 ||||| |||||||||| ||||||||||| ||||| ||||||||||| ||||| Sbjct: 11223659 tctcatacttttgggcactctcttcatcgtcacctggctcctcatcaagtac 11223710
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 168 bits (85), Expect = 2e-38 Identities = 136/153 (88%) Strand = Plus / Plus Query: 407 cttacgatgagaggctacggtggccctatatagtgctgttgtgccaggataaacagctaa 466 |||||||| |||||| || || || ||||||||||||||||||| ||||||||||||||| Sbjct: 11221099 cttacgattagaggcaacagtagctctatatagtgctgttgtgctaggataaacagctaa 11221158 Query: 467 gacttgccgaccctgtccaaaatcctgagcactagacggatctcctttctttggaaatgg 526 |||||| |||||||| |||||||| | ||||| || ||||| ||| ||||||||||||| Sbjct: 11221159 gacttgtcgaccctgcccaaaatctggggcactggaaggatcccctctctttggaaatgg 11221218 Query: 527 aataatatatgacataggtaacttgtacttcct 559 |||||||| ||||||||| |||||||||||||| Sbjct: 11221219 aataatatctgacataggcaacttgtacttcct 11221251 Score = 91.7 bits (46), Expect = 3e-15 Identities = 76/86 (88%) Strand = Plus / Plus Query: 618 tcttttgtttccttatcgaaatgtatgaccttcaccacaaaccactcgtctttttcatca 677 |||||||||||||||||||||||||| ||||||||||||||||| || |||||||| || Sbjct: 11224414 tcttttgtttccttatcgaaatgtatcaccttcaccacaaaccattcatctttttcttcg 11224473 Query: 678 tccgactttaccctcgctgcaacctg 703 || || || ||| | ||||||||||| Sbjct: 11224474 tctgatttgaccttagctgcaacctg 11224499 Score = 85.7 bits (43), Expect = 2e-13 Identities = 85/99 (85%) Strand = Plus / Plus Query: 287 ttttcattgccgatggccctctgggagcgcaaccactctgtaaaatggaacagctctctc 346 |||||| ||||| |||||||| ||||| | ||||||||| || || || |||||||| | Sbjct: 11217697 ttttcactgccggtggccctccgggagaggaaccactctatagaacggcacagctctttg 11217756 Query: 347 tggtagattcccatcctcttcgtcatcatcaaataagag 385 ||||||||| |||||||| |||||||||||||| ||||| Sbjct: 11217757 tggtagatttccatcctcctcgtcatcatcaaacaagag 11217795 Score = 63.9 bits (32), Expect = 7e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 559 tctcaaacttttgggcgctctcttcatcatcaccaggctcctcatccagtac 610 ||||| |||||||||| ||||||||||| ||||| ||||||||||| ||||| Sbjct: 11223330 tctcatacttttgggcactctcttcatcgtcacctggctcctcatcaagtac 11223381
>emb|AL731875.2|CNS08C8F Oryza sativa chromosome 12, . BAC OJ1060_G11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 108805 Score = 168 bits (85), Expect = 2e-38 Identities = 136/153 (88%) Strand = Plus / Minus Query: 407 cttacgatgagaggctacggtggccctatatagtgctgttgtgccaggataaacagctaa 466 |||||||| |||||| || || || ||||||||||||||||||| ||||||||||||||| Sbjct: 35230 cttacgattagaggcaacagtagctctatatagtgctgttgtgctaggataaacagctaa 35171 Query: 467 gacttgccgaccctgtccaaaatcctgagcactagacggatctcctttctttggaaatgg 526 |||||| |||||||| |||||||| | ||||| || ||||| ||| ||||||||||||| Sbjct: 35170 gacttgtcgaccctgcccaaaatctggggcactggaaggatcccctctctttggaaatgg 35111 Query: 527 aataatatatgacataggtaacttgtacttcct 559 |||||||| ||||||||| |||||||||||||| Sbjct: 35110 aataatatctgacataggcaacttgtacttcct 35078 Score = 91.7 bits (46), Expect = 3e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 618 tcttttgtttccttatcgaaatgtatgaccttcaccacaaaccactcgtctttttcatca 677 |||||||||||||||||||||||||| ||||||||||||||||| || |||||||| || Sbjct: 31915 tcttttgtttccttatcgaaatgtatcaccttcaccacaaaccattcatctttttcttcg 31856 Query: 678 tccgactttaccctcgctgcaacctg 703 || || || ||| | ||||||||||| Sbjct: 31855 tctgatttgaccttagctgcaacctg 31830 Score = 85.7 bits (43), Expect = 2e-13 Identities = 85/99 (85%) Strand = Plus / Minus Query: 287 ttttcattgccgatggccctctgggagcgcaaccactctgtaaaatggaacagctctctc 346 |||||| ||||| |||||||| ||||| | ||||||||| || || || |||||||| | Sbjct: 38632 ttttcactgccggtggccctccgggagaggaaccactctatagaacggcacagctctttg 38573 Query: 347 tggtagattcccatcctcttcgtcatcatcaaataagag 385 ||||||||| |||||||| |||||||||||||| ||||| Sbjct: 38572 tggtagatttccatcctcctcgtcatcatcaaacaagag 38534 Score = 63.9 bits (32), Expect = 7e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 559 tctcaaacttttgggcgctctcttcatcatcaccaggctcctcatccagtac 610 ||||| |||||||||| ||||||||||| ||||| ||||||||||| ||||| Sbjct: 32999 tctcatacttttgggcactctcttcatcgtcacctggctcctcatcaagtac 32948
>dbj|AP004466.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT09C23, TM0001, complete sequence Length = 103397 Score = 77.8 bits (39), Expect = 4e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 575 gctctcttcatcatcaccaggctcctcatccagtacttcaaat 617 |||||||||||||||||||||||||||||| |||||||||||| Sbjct: 24591 gctctcttcatcatcaccaggctcctcatctagtacttcaaat 24549
>ref|NM_113661.3| Arabidopsis thaliana unknown protein AT3G27460 mRNA, complete cds Length = 1322 Score = 61.9 bits (31), Expect = 3e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 579 tcttcatcatcaccaggctcctcatccagtacttcaaattcttttgtttccttatcgaaa 638 ||||||||||| || || || ||||| |||||||||| |||||||||||| | ||||| Sbjct: 792 tcttcatcatctcctggttcttcatcaagtacttcaacttcttttgtttctctgtcgaag 733 Query: 639 tgtatgaccttcaccacaaacca 661 || || || |||||||||||||| Sbjct: 732 tgaataactttcaccacaaacca 710
>ref|NM_123419.2| Arabidopsis thaliana unknown protein AT5G40550 mRNA, complete cds Length = 1283 Score = 61.9 bits (31), Expect = 3e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 579 tcttcatcatcaccaggctcctcatccagtacttcaaattcttttgtttccttatcgaaa 638 ||||||||||| || || || ||||| |||||||||| |||||||||||| ||||||| Sbjct: 716 tcttcatcatctcctggttcttcatcaagtacttcaacttcttttgtttctctatcgaag 657 Query: 639 tgtatgaccttcaccacaaacca 661 || || || || ||||||||||| Sbjct: 656 tgaataactttaaccacaaacca 634 Score = 40.1 bits (20), Expect = 9.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 438 agtgctgttgtgccaggataaacagctaagac 469 ||||||||||| || ||||| ||||||||||| Sbjct: 851 agtgctgttgtcccgggatatacagctaagac 820
>gb|AY122985.1| Arabidopsis thaliana unknown protein (At3g27460) mRNA, complete cds Length = 844 Score = 61.9 bits (31), Expect = 3e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 579 tcttcatcatcaccaggctcctcatccagtacttcaaattcttttgtttccttatcgaaa 638 ||||||||||| || || || ||||| |||||||||| |||||||||||| | ||||| Sbjct: 527 tcttcatcatctcctggttcttcatcaagtacttcaacttcttttgtttctctgtcgaag 468 Query: 639 tgtatgaccttcaccacaaacca 661 || || || |||||||||||||| Sbjct: 467 tgaataactttcaccacaaacca 445
>gb|AY080609.1| Arabidopsis thaliana unknown protein (At3g27460) mRNA, complete cds Length = 1355 Score = 61.9 bits (31), Expect = 3e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 579 tcttcatcatcaccaggctcctcatccagtacttcaaattcttttgtttccttatcgaaa 638 ||||||||||| || || || ||||| |||||||||| |||||||||||| | ||||| Sbjct: 797 tcttcatcatctcctggttcttcatcaagtacttcaacttcttttgtttctctgtcgaag 738 Query: 639 tgtatgaccttcaccacaaacca 661 || || || |||||||||||||| Sbjct: 737 tgaataactttcaccacaaacca 715
>gb|BT024494.1| Arabidopsis thaliana At5g40550 mRNA, complete cds Length = 822 Score = 61.9 bits (31), Expect = 3e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 579 tcttcatcatcaccaggctcctcatccagtacttcaaattcttttgtttccttatcgaaa 638 ||||||||||| || || || ||||| |||||||||| |||||||||||| ||||||| Sbjct: 536 tcttcatcatctcctggttcttcatcaagtacttcaacttcttttgtttctctatcgaag 477 Query: 639 tgtatgaccttcaccacaaacca 661 || || || || ||||||||||| Sbjct: 476 tgaataactttaaccacaaacca 454 Score = 40.1 bits (20), Expect = 9.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 438 agtgctgttgtgccaggataaacagctaagac 469 ||||||||||| || ||||| ||||||||||| Sbjct: 671 agtgctgttgtcccgggatatacagctaagac 640
>gb|BT022070.1| Arabidopsis thaliana unknown protein (At5g40550) mRNA, complete cds Length = 1181 Score = 61.9 bits (31), Expect = 3e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 579 tcttcatcatcaccaggctcctcatccagtacttcaaattcttttgtttccttatcgaaa 638 ||||||||||| || || || ||||| |||||||||| |||||||||||| ||||||| Sbjct: 753 tcttcatcatctcctggttcttcatcaagtacttcaacttcttttgtttctctatcgaag 694 Query: 639 tgtatgaccttcaccacaaacca 661 || || || || ||||||||||| Sbjct: 693 tgaataactttaaccacaaacca 671 Score = 40.1 bits (20), Expect = 9.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 438 agtgctgttgtgccaggataaacagctaagac 469 ||||||||||| || ||||| ||||||||||| Sbjct: 888 agtgctgttgtcccgggatatacagctaagac 857
>gb|U53337.2| Caenorhabditis elegans cosmid R02E12, complete sequence Length = 39151 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Plus Query: 615 aattcttttgtttccttatcga 636 |||||||||||||||||||||| Sbjct: 703 aattcttttgtttccttatcga 724
>ref|XM_780100.1| PREDICTED: Strongylocentrotus purpuratus similar to solute carrier family 28 (sodium-coupled nucleoside transporter), member 1 (LOC580019), mRNA Length = 1621 Score = 44.1 bits (22), Expect = 0.62 Identities = 28/30 (93%) Strand = Plus / Plus Query: 576 ctctcttcatcatcaccaggctcctcatcc 605 |||||||||||||||||| |||||||||| Sbjct: 5 ctctcttcatcatcaccaccctcctcatcc 34
>gb|AC103632.8| Mus musculus chromosome 1, clone RP24-555D5, complete sequence Length = 177269 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 611 ttcaaattcttttgtttcctt 631 ||||||||||||||||||||| Sbjct: 30207 ttcaaattcttttgtttcctt 30227
>gb|AC009391.16| Drosophila melanogaster clone BACR21I23, complete sequence Length = 189254 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 185 gtgggctgcaggtaaaataag 205 ||||||||||||||||||||| Sbjct: 89347 gtgggctgcaggtaaaataag 89367
>gb|AC123551.5| Mus musculus BAC clone RP24-330P10 from chromosome 1, complete sequence Length = 167597 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 611 ttcaaattcttttgtttcctt 631 ||||||||||||||||||||| Sbjct: 68417 ttcaaattcttttgtttcctt 68397
>emb|AL157777.5| Human DNA sequence from clone RP11-76H14 on chromosome 6 Contains the HTR1E gene for 5-hydroxytryptamine (serotonin) receptor, a pseudogene similar to the 5' end of ST13 (suppression of tumorigenicity 13, a Hsp70-interacting protein), a pseudogene similar to the 5' end of a Tec protein-tyrosine kinase, a pseudogene similar to 60S ribosomal protein L7,a pseudogene similar to the bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase mitochondria and two CpG islands, complete sequence Length = 169669 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 cttgaaaactgtcatcttcgt 243 ||||||||||||||||||||| Sbjct: 116998 cttgaaaactgtcatcttcgt 116978
>gb|AF448496.1| Toxoplasma gondii cGMP dependent protein kinase (PKG) gene, complete cds Length = 20447 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 ctctcgatatatatacataca 151 ||||||||||||||||||||| Sbjct: 16710 ctctcgatatatatacataca 16730
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 150 caatggtagtagaataatatgaact 174 |||||||||||||||||| |||||| Sbjct: 12810088 caatggtagtagaataatttgaact 12810112
>dbj|AP005612.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0073A18 Length = 176755 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 150 caatggtagtagaataatatgaact 174 |||||||||||||||||| |||||| Sbjct: 29570 caatggtagtagaataatttgaact 29594
>gb|AE003780.4| Drosophila melanogaster chromosome 3R, section 118 of 118 of the complete sequence Length = 256818 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 185 gtgggctgcaggtaaaataag 205 ||||||||||||||||||||| Sbjct: 156911 gtgggctgcaggtaaaataag 156931
>gb|BC077199.1| Xenopus laevis hypothetical LOC496372, mRNA (cDNA clone MGC:78932 IMAGE:4202853), complete cds Length = 1128 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 438 agtgctgttgtgccaggataaacag 462 |||||||| |||||||||||||||| Sbjct: 726 agtgctgtggtgccaggataaacag 702
>gb|U59223.1|PHU59223 Plexaura homomalla 8(R)-lipoxygenase mRNA, complete cds Length = 2401 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 581 ttcatcatcaccaggctcctc 601 ||||||||||||||||||||| Sbjct: 254 ttcatcatcaccaggctcctc 234
>emb|AL929443.4| Mouse DNA sequence from clone RP23-467A7 on chromosome 2, complete sequence Length = 189821 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 316 caaccactctgtaaaatggaa 336 ||||||||||||||||||||| Sbjct: 104845 caaccactctgtaaaatggaa 104865
>gb|AC145545.2| Homo sapiens chromosome UNKNOWN clone RP11-1365M9, complete sequence Length = 184813 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 gatatatatacatacaatgg 155 |||||||||||||||||||| Sbjct: 172150 gatatatatacatacaatgg 172131
>ref|NM_120969.2| Arabidopsis thaliana ANAC082; transcription factor AT5G09330 (ANAC082) mRNA, complete cds Length = 1728 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 ctcttcgtcatcatcaaata 381 |||||||||||||||||||| Sbjct: 837 ctcttcgtcatcatcaaata 818
>gb|BT020263.1| Arabidopsis thaliana At5g09330 gene, complete cds Length = 2026 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 ctcttcgtcatcatcaaata 381 |||||||||||||||||||| Sbjct: 1227 ctcttcgtcatcatcaaata 1208
>ref|NM_001033950.1| Strongylocentrotus purpuratus egg permeability glycoprotein (ABCB1), mRNA Length = 3990 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 catcctcttcgtcatcatca 377 |||||||||||||||||||| Sbjct: 2095 catcctcttcgtcatcatca 2076
>gb|AC124107.8| Mus musculus chromosome 5, clone RP24-317M4, complete sequence Length = 194641 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 527 aataatatatgacataggtaactt 550 |||||||||||||||| ||||||| Sbjct: 111493 aataatatatgacataagtaactt 111516
>ref|XM_459173.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0D17237g) partial mRNA Length = 2100 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 catcctcttcgtcatcatca 377 |||||||||||||||||||| Sbjct: 340 catcctcttcgtcatcatca 321
>ref|NM_001040465.1| Gallus gallus Dicer1, Dcr-1 homolog (Drosophila) (DICER1), mRNA Length = 6152 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 catcctcttcgtcatcatca 377 |||||||||||||||||||| Sbjct: 4291 catcctcttcgtcatcatca 4272
>ref|XM_457407.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0B10659g) partial mRNA Length = 1086 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 catcctcttcgtcatcatca 377 |||||||||||||||||||| Sbjct: 440 catcctcttcgtcatcatca 459
>ref|XM_716947.1| Candida albicans SC5314 hypothetical protein (CaO19_11453), mRNA Length = 744 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 catcctcttcgtcatcatca 377 |||||||||||||||||||| Sbjct: 625 catcctcttcgtcatcatca 606 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 catcctcttcgtcatcatca 377 |||||||||||||||||||| Sbjct: 607 catcctcttcgtcatcatca 588
>ref|XM_716786.1| Candida albicans SC5314 hypothetical protein (CaO19_3970), mRNA Length = 744 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 catcctcttcgtcatcatca 377 |||||||||||||||||||| Sbjct: 625 catcctcttcgtcatcatca 606 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 catcctcttcgtcatcatca 377 |||||||||||||||||||| Sbjct: 607 catcctcttcgtcatcatca 588
>gb|BT013976.1| Lycopersicon esculentum clone 133021F, mRNA sequence Length = 1181 Score = 40.1 bits (20), Expect = 9.7 Identities = 35/40 (87%) Strand = Plus / Minus Query: 585 tcatcaccaggctcctcatccagtacttcaaattcttttg 624 ||||| || ||||||||||| | |||||||||||||||| Sbjct: 622 tcatctcccggctcctcatctaaaacttcaaattcttttg 583
>gb|AY701853.1| Strongylocentrotus purpuratus egg permeability glycoprotein (ABCB1) mRNA, complete cds Length = 3990 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 catcctcttcgtcatcatca 377 |||||||||||||||||||| Sbjct: 2095 catcctcttcgtcatcatca 2076
>gb|AC002433.2| Homo sapiens BAC clone CTA-317M2 from 7, complete sequence Length = 139919 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 aaaacaaccctcaatcaact 71 |||||||||||||||||||| Sbjct: 80526 aaaacaaccctcaatcaact 80507
>ref|XM_743920.1| Aspergillus fumigatus Af293 metalloreductase (Afu7g04970) partial mRNA Length = 1902 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 tgggcgctctcttcatcatc 589 |||||||||||||||||||| Sbjct: 893 tgggcgctctcttcatcatc 912
>gb|AC146510.3| Pan troglodytes BAC clone RP43-64B24 from 7, complete sequence Length = 153089 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 aaaacaaccctcaatcaact 71 |||||||||||||||||||| Sbjct: 138111 aaaacaaccctcaatcaact 138130
>gb|AC129778.5| Homo sapiens BAC clone RP11-1221G12 from UL, complete sequence Length = 236177 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 gatatatatacatacaatgg 155 |||||||||||||||||||| Sbjct: 189063 gatatatatacatacaatgg 189044
>gb|AC134592.5| Mus musculus BAC clone RP23-381O3 from chromosome 9, complete sequence Length = 184917 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 taaaacaaccctcaatcaac 70 |||||||||||||||||||| Sbjct: 14976 taaaacaaccctcaatcaac 14995
>gb|AC127269.3| Mus musculus BAC clone RP23-432B20 from chromosome 9, complete sequence Length = 212660 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 taaaacaaccctcaatcaac 70 |||||||||||||||||||| Sbjct: 50951 taaaacaaccctcaatcaac 50932
>gb|AC117616.8| Mus musculus chromosome 9, clone RP23-111P13, complete sequence Length = 242288 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 taaaacaaccctcaatcaac 70 |||||||||||||||||||| Sbjct: 51260 taaaacaaccctcaatcaac 51279
>gb|AF426384.1| Danio rerio deltaD protein gene, complete cds Length = 13352 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 taactctcgatatatatacataca 151 ||||||| |||||||||||||||| Sbjct: 8635 taactctggatatatatacataca 8658
>gb|AC117187.3| Mus musculus BAC clone RP23-41M4 from 1, complete sequence Length = 138404 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 455 ataaacagctaagacttgcc 474 |||||||||||||||||||| Sbjct: 123084 ataaacagctaagacttgcc 123103
>emb|CR727366.2|CNS0GO6K Tetraodon nigroviridis full-length cDNA Length = 1356 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 ccatcctcttcgtcatcatc 376 |||||||||||||||||||| Sbjct: 229 ccatcctcttcgtcatcatc 210
>gb|AC145920.1| Pan troglodytes BAC clone RP43-10C15 from 7, complete sequence Length = 188373 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 aaaacaaccctcaatcaact 71 |||||||||||||||||||| Sbjct: 135678 aaaacaaccctcaatcaact 135659
>emb|BX255923.13| Human DNA sequence from clone RP11-115J7 on chromosome 9 Contains the 5' end of a pseudogene similar to part of phosphoglucomutase 5 (PGRM) (PGM5), a novel gene, the gene for a novel forkhead box D4 (FOXD4) protein, the gene for a novel protein similar to COBW domain containing 1 (CBWD1) and four CpG islands, complete sequence Length = 179342 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 gatatatatacatacaatgg 155 |||||||||||||||||||| Sbjct: 69937 gatatatatacatacaatgg 69956
>emb|BX284632.11| Human DNA sequence from clone RP11-460E7 on chromosome 9 Contains a gene similar to COBW-like protein (LOC55871), the FOXD4L4 gene for forkhead box D4 like 4, an immunoglobulin kappa variable 1-5 (IGKV1-5) pseudogene, three novel pseudogenes, a pseudogene similar to part of tripartite motif-containing protein family, a pseudogene similar to part of BMS1-like, ribosome assembly protein (yeast) (BMS1L) and three CpG islands, complete sequence Length = 187806 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 gatatatatacatacaatgg 155 |||||||||||||||||||| Sbjct: 117166 gatatatatacatacaatgg 117147
>emb|AL512605.13| Human DNA sequence from clone RP11-15J10 on chromosome 9 Contains a pseudogene similar to part of COBW doamin family protein, the FOXD4L2 gene for forkhead box D4 like 2, an immunoglobulin kappa variable 1-5 (IGKV1-5) pseudogene, three novel pseudogenes, a pseudogene similar to part of cytochrome P450 family protein, a pseudogene similar to part of BMS1-like, ribosome assembly protein (yeast) (BMS1L) and four CpG islands, complete sequence Length = 158187 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 gatatatatacatacaatgg 155 |||||||||||||||||||| Sbjct: 124439 gatatatatacatacaatgg 124420
>gb|AC110176.8| Mus musculus, clone RP23-304C24, complete sequence Length = 234714 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 608 tacttcaaattcttttgtttcctt 631 |||||||| ||||||||||||||| Sbjct: 156391 tacttcaacttcttttgtttcctt 156414
>emb|AL353608.20| Human DNA sequence from clone RP11-561O23 on chromosome 9 Contains four novel genes, the CBWD3 gene for COBW domain containing 3, the FOXD4L3 gene for forkhead box D4 like 3, the 5' end of the PGM5 gene for phosphoglucomutase 5, and four CpG islands, complete sequence Length = 172991 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 gatatatatacatacaatgg 155 |||||||||||||||||||| Sbjct: 75549 gatatatatacatacaatgg 75568
>gb|AC158912.3| Mus musculus chromosome 5, clone RP23-131C17, complete sequence Length = 182161 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 527 aataatatatgacataggtaactt 550 |||||||||||||||| ||||||| Sbjct: 162531 aataatatatgacataagtaactt 162554
>gb|AC167968.5| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940121D9, complete sequence Length = 108830 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 ccatcctcttcgtcatcatc 376 |||||||||||||||||||| Sbjct: 6217 ccatcctcttcgtcatcatc 6236
>ref|XM_786036.1| PREDICTED: Strongylocentrotus purpuratus similar to ATP-binding cassette, sub-family B (MDR/TAP), member 1 (LOC586248), partial mRNA Length = 1011 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 catcctcttcgtcatcatca 377 |||||||||||||||||||| Sbjct: 637 catcctcttcgtcatcatca 618
>emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS767 of Debaryomyces hansenii Length = 1602771 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 catcctcttcgtcatcatca 377 |||||||||||||||||||| Sbjct: 1327449 catcctcttcgtcatcatca 1327430
>emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS767 of Debaryomyces hansenii Length = 1349926 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 catcctcttcgtcatcatca 377 |||||||||||||||||||| Sbjct: 825981 catcctcttcgtcatcatca 826000
>emb|AL391712.1|ATT5E8 Arabidopsis thaliana DNA chromosome 5, BAC clone T5E8 (ESSA project) Length = 103534 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 ctcttcgtcatcatcaaata 381 |||||||||||||||||||| Sbjct: 34317 ctcttcgtcatcatcaaata 34336
>emb|CR931802.8| Zebrafish DNA sequence from clone CH211-223A10 in linkage group 13, complete sequence Length = 136909 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 catcctcttcgtcatcatca 377 |||||||||||||||||||| Sbjct: 117019 catcctcttcgtcatcatca 117000
>gb|AC105933.2| Homo sapiens chromosome 3 clone RP11-454I5, complete sequence Length = 175370 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 608 tacttcaaattcttttgttt 627 |||||||||||||||||||| Sbjct: 96312 tacttcaaattcttttgttt 96331
>gb|AC099484.4| Homo sapiens chromosome 5 clone CTD-2004P1, complete sequence Length = 134760 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 gatatatatacatacaatgg 155 |||||||||||||||||||| Sbjct: 119630 gatatatatacatacaatgg 119649
>dbj|AB253768.1| Gallus gallus Dicer mRNA for Dicer protein, complete cds Length = 6152 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 catcctcttcgtcatcatca 377 |||||||||||||||||||| Sbjct: 4291 catcctcttcgtcatcatca 4272
>gb|AC005885.1| Homo sapiens 12q24.2 PAC RPCI5-1135M4 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 84780 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 609 acttcaaattcttttgtttcctta 632 ||||||||| |||||||||||||| Sbjct: 53472 acttcaaatgcttttgtttcctta 53449
>gb|AC016884.10| Homo sapiens chromosome , clone RP11-350M7, complete sequence Length = 209320 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 322 ctctgtaaaatggaacagctctct 345 |||||||||||||| ||||||||| Sbjct: 28852 ctctgtaaaatggaccagctctct 28875
>gb|AC021269.4|AC021269 Homo sapiens, clone RP11-15D14, complete sequence Length = 144609 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 322 ctctgtaaaatggaacagctctct 345 |||||||||||||| ||||||||| Sbjct: 35674 ctctgtaaaatggaccagctctct 35651
>gb|AY772740.1| Listonella pelagia phage phiHSIC, complete genome Length = 37966 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 accgcatcatcaggcttgaa 228 |||||||||||||||||||| Sbjct: 3542 accgcatcatcaggcttgaa 3523
>gb|AC016447.5|AC016447 Arabidopsis thaliana chromosome 1 BAC T22E19 genomic sequence, complete sequence Length = 107816 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 atatatatacatacaatggt 156 |||||||||||||||||||| Sbjct: 63636 atatatatacatacaatggt 63655
>gb|AC084447.1|AC084447 Caenorhabditis briggsae cosmid CB019G12, complete sequence Length = 88839 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 617 ttcttttgtttccttatcga 636 |||||||||||||||||||| Sbjct: 24741 ttcttttgtttccttatcga 24760
>dbj|AB009052.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNF13 Length = 85992 Score = 40.1 bits (20), Expect = 9.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 438 agtgctgttgtgccaggataaacagctaagac 469 ||||||||||| || ||||| ||||||||||| Sbjct: 17512 agtgctgttgtcccgggatatacagctaagac 17481
>emb|AL731809.17| Human DNA sequence from clone RP13-354N4 on chromosome 9, complete sequence Length = 202611 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 gatatatatacatacaatgg 155 |||||||||||||||||||| Sbjct: 110457 gatatatatacatacaatgg 110476
>gb|AC006115.1|AC006115 Homo sapiens chromosome 19, BAC CIT-B-470f8 (BC330812), complete sequence Length = 178367 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 atatatatacatacaatggt 156 |||||||||||||||||||| Sbjct: 44216 atatatatacatacaatggt 44235 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,520,016 Number of Sequences: 3902068 Number of extensions: 7520016 Number of successful extensions: 192011 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 191661 Number of HSP's gapped (non-prelim): 349 length of query: 708 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 685 effective length of database: 17,143,297,704 effective search space: 11743158927240 effective search space used: 11743158927240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)