ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags6l20 |
|---|---|
| Clone Library Name | barley_pub |
>Y750_METJA (Q58160) Hypothetical protein MJ0750| Length = 238 Score = 35.4 bits (80), Expect = 0.18 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%) Frame = -2 Query: 280 IISLVATYY*ILYCICSRCNVGRYRCLLFVAKGLCIMGCVLLVMY---ISFLHQFCLDCS 110 I+SLV TYY +Y C C +G L L I+ L + + ++F FC + Sbjct: 110 ILSLVLTYYLSIYAFCQVCPIGFLTNLYGTVISLIILIFFLSLSFFVPMAFCRYFCPLGA 169 Query: 109 FLHVYSSEP 83 FL ++S +P Sbjct: 170 FLSIFSIKP 178
>PGLR_GOSHI (Q39786) Polygalacturonase precursor (EC 3.2.1.15) (PG) (Pectinase)| Length = 407 Score = 30.8 bits (68), Expect(2) = 0.63 Identities = 16/52 (30%), Positives = 28/52 (53%) Frame = -1 Query: 677 GYVRNVYIADVSMHNVSMAIRITGNYGEHPDSKYDKNALPIISNITIENVVG 522 G V ++ D++M+NVS I I Y K ++ + +SNI+ +N+ G Sbjct: 288 GAVSEIHFEDITMNNVSSPILIDQQYCPWNKCKKNEESKVKLSNISFKNIRG 339 Score = 21.6 bits (44), Expect(2) = 0.63 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -3 Query: 729 IVNSLHGIRIKTAPG 685 I N+ +G RIKT PG Sbjct: 270 ITNTSNGARIKTWPG 284
>PGLR_GOSBA (Q39766) Polygalacturonase precursor (EC 3.2.1.15) (PG) (Pectinase)| Length = 407 Score = 30.8 bits (68), Expect(2) = 0.63 Identities = 16/52 (30%), Positives = 28/52 (53%) Frame = -1 Query: 677 GYVRNVYIADVSMHNVSMAIRITGNYGEHPDSKYDKNALPIISNITIENVVG 522 G V ++ D++M+NVS I I Y K ++ + +SNI+ +N+ G Sbjct: 288 GAVSEIHFEDITMNNVSSPILIDQQYCPWNKCKKNEESKVKLSNISFKNIRG 339 Score = 21.6 bits (44), Expect(2) = 0.63 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -3 Query: 729 IVNSLHGIRIKTAPG 685 I N+ +G RIKT PG Sbjct: 270 ITNTSNGARIKTWPG 284
>PGLR2_ARATH (P49063) Exopolygalacturonase clone GBGA483 precursor (EC 3.2.1.67)| (ExoPG) (Pectinase) (Galacturan 1,4-alpha-galacturonidase) Length = 444 Score = 30.4 bits (67), Expect(2) = 0.81 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%) Frame = -1 Query: 677 GYVRNVYIADVSMHNVSMAIRITGNYGEHPDSKYDKNALPIISNITIENVVGID-VGVAG 501 G N+ D++M NVS+ + I Y + K + +S++TI+ + G VA Sbjct: 328 GIASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSQVKLSDVTIKGIKGTSATKVAV 387 Query: 500 ILEGIEGDNFSSICISNVSL 441 L +G ++I +S+++L Sbjct: 388 KLMCSKGVPCTNIALSDINL 407 Score = 21.6 bits (44), Expect(2) = 0.81 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = -3 Query: 729 IVNSLHGIRIKTAPG 685 I N+ +G+RIKT PG Sbjct: 310 IKNTDNGVRIKTWPG 324
>ATP6_TRYBB (P24499) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)| Length = 229 Score = 33.1 bits (74), Expect = 0.91 Identities = 16/62 (25%), Positives = 30/62 (48%) Frame = -2 Query: 211 YRCLLFVAKGLCIMGCVLLVMYISFLHQFCLDCSFLHVYSSEPGLXLLPXFDLYXVCC*X 32 Y C+ ++ L ++ C++ ++YI+FL FC C F + G + F + + C Sbjct: 73 YYCITYL--NLYLLFCIVFLLYIAFLFLFCFLCDFFLFNNLLVGDSFMDVFFIRFLLCFL 130 Query: 31 PC 26 C Sbjct: 131 EC 132
>PARC_STAES (Q8CSN8) DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase| IV subunit A) Length = 800 Score = 32.3 bits (72), Expect = 1.6 Identities = 21/72 (29%), Positives = 34/72 (47%) Frame = -1 Query: 695 LLQDAEGYVRNVYIADVSMHNVSMAIRITGNYGEHPDSKYDKNALPIISNITIENVVGID 516 LL + + + Y D+ HN++ I+ T Y + PD I N ++ + G D Sbjct: 163 LLINGSTGISSGYATDIPPHNLAEVIQGTLKYIDQPD---------ITINQLMKYIKGPD 213 Query: 515 VGVAGILEGIEG 480 GI++GIEG Sbjct: 214 FPTGGIIQGIEG 225
>PARC_STAEQ (Q5HPI5) DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase| IV subunit A) Length = 800 Score = 32.3 bits (72), Expect = 1.6 Identities = 21/72 (29%), Positives = 34/72 (47%) Frame = -1 Query: 695 LLQDAEGYVRNVYIADVSMHNVSMAIRITGNYGEHPDSKYDKNALPIISNITIENVVGID 516 LL + + + Y D+ HN++ I+ T Y + PD I N ++ + G D Sbjct: 163 LLINGSTGISSGYATDIPPHNLAEVIQGTLKYIDQPD---------ITINQLMKYIKGPD 213 Query: 515 VGVAGILEGIEG 480 GI++GIEG Sbjct: 214 FPTGGIIQGIEG 225
>PARC_STAAW (Q8NWU8) DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase| IV subunit A) Length = 800 Score = 32.3 bits (72), Expect = 1.6 Identities = 18/60 (30%), Positives = 30/60 (50%) Frame = -1 Query: 659 YIADVSMHNVSMAIRITGNYGEHPDSKYDKNALPIISNITIENVVGIDVGVAGILEGIEG 480 Y D+ HN++ I+ T Y ++PD I N ++ + G D GI++GI+G Sbjct: 175 YATDIPPHNLAEVIQATLKYIDNPD---------ITVNQLMKYIKGPDFPTGGIIQGIDG 225
>PARC_STAAU (P50073) DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase| IV subunit A) Length = 800 Score = 32.3 bits (72), Expect = 1.6 Identities = 18/60 (30%), Positives = 30/60 (50%) Frame = -1 Query: 659 YIADVSMHNVSMAIRITGNYGEHPDSKYDKNALPIISNITIENVVGIDVGVAGILEGIEG 480 Y D+ HN++ I+ T Y ++PD I N ++ + G D GI++GI+G Sbjct: 175 YATDIPPHNLAEVIQATLKYIDNPD---------ITVNQLMKYIKGPDFPTGGIIQGIDG 225
>PARC_STAAS (Q6G9K4) DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase| IV subunit A) Length = 800 Score = 32.3 bits (72), Expect = 1.6 Identities = 18/60 (30%), Positives = 30/60 (50%) Frame = -1 Query: 659 YIADVSMHNVSMAIRITGNYGEHPDSKYDKNALPIISNITIENVVGIDVGVAGILEGIEG 480 Y D+ HN++ I+ T Y ++PD I N ++ + G D GI++GI+G Sbjct: 175 YATDIPPHNLAEVIQATLKYIDNPD---------ITVNQLMKYIKGPDFPTGGIIQGIDG 225
>PARC_STAAR (Q6GH50) DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase| IV subunit A) Length = 800 Score = 32.3 bits (72), Expect = 1.6 Identities = 18/60 (30%), Positives = 30/60 (50%) Frame = -1 Query: 659 YIADVSMHNVSMAIRITGNYGEHPDSKYDKNALPIISNITIENVVGIDVGVAGILEGIEG 480 Y D+ HN++ I+ T Y ++PD I N ++ + G D GI++GI+G Sbjct: 175 YATDIPPHNLAEVIQATLKYIDNPD---------ITVNQLMKYIKGPDFPTGGIIQGIDG 225
>PARC_STAAN (Q93KF4) DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase| IV subunit A) Length = 800 Score = 32.3 bits (72), Expect = 1.6 Identities = 18/60 (30%), Positives = 30/60 (50%) Frame = -1 Query: 659 YIADVSMHNVSMAIRITGNYGEHPDSKYDKNALPIISNITIENVVGIDVGVAGILEGIEG 480 Y D+ HN++ I+ T Y ++PD I N ++ + G D GI++GI+G Sbjct: 175 YATDIPPHNLAEVIQATLKYIDNPD---------ITVNQLMKYIKGPDFPTGGIIQGIDG 225
>PARC_STAAM (Q931S2) DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase| IV subunit A) Length = 800 Score = 32.3 bits (72), Expect = 1.6 Identities = 18/60 (30%), Positives = 30/60 (50%) Frame = -1 Query: 659 YIADVSMHNVSMAIRITGNYGEHPDSKYDKNALPIISNITIENVVGIDVGVAGILEGIEG 480 Y D+ HN++ I+ T Y ++PD I N ++ + G D GI++GI+G Sbjct: 175 YATDIPPHNLAEVIQATLKYIDNPD---------ITVNQLMKYIKGPDFPTGGIIQGIDG 225
>PARC_STAAC (Q5HG64) DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase| IV subunit A) Length = 800 Score = 32.3 bits (72), Expect = 1.6 Identities = 18/60 (30%), Positives = 30/60 (50%) Frame = -1 Query: 659 YIADVSMHNVSMAIRITGNYGEHPDSKYDKNALPIISNITIENVVGIDVGVAGILEGIEG 480 Y D+ HN++ I+ T Y ++PD I N ++ + G D GI++GI+G Sbjct: 175 YATDIPPHNLAEVIQATLKYIDNPD---------ITVNQLMKYIKGPDFPTGGIIQGIDG 225
>PGLR_PERAE (Q02096) Polygalacturonase precursor (EC 3.2.1.15) (PG) (Pectinase)| Length = 462 Score = 30.0 bits (66), Expect = 7.7 Identities = 16/63 (25%), Positives = 29/63 (46%) Frame = -1 Query: 710 GSESRLLQDAEGYVRNVYIADVSMHNVSMAIRITGNYGEHPDSKYDKNALPIISNITIEN 531 G + Q G +N+ ++ MHNV+ I I Y + D ++ + +SN+ N Sbjct: 333 GLRIKTWQGGSGSAKNIKFQNIVMHNVTNPIIIDQYYCDSKDPCPEQESAVKVSNVAYMN 392 Query: 530 VVG 522 + G Sbjct: 393 IRG 395 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,916,909 Number of Sequences: 219361 Number of extensions: 2080149 Number of successful extensions: 6550 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 6045 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6538 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7649585595 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
