| Clone Name | rbags6l20 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470318.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2278 Score = 244 bits (123), Expect = 3e-61 Identities = 352/427 (82%), Gaps = 1/427 (0%) Strand = Plus / Minus Query: 308 aagaactgccaccgttgtagcagattggtgtctcttcacaatctgttttgagttgctcgc 367 ||||||| ||||| | ||||| |||||||||| | ||||||||||| |||||||||| | Sbjct: 1870 aagaacttccaccatcatagcaaattggtgtctgtccacaatctgttctgagttgctcac 1811 Query: 368 acgactctggggtcacggagttggaatacccttggatacgtgagcaattccatggatatc 427 | ||||||||| |||| ||||| ||||| |||| |||| | || |||||||| |||| Sbjct: 1810 atgactctgggatcacagagtttgaataaccttcgataagcgaacaattccagggatgca 1751 Query: 428 tggatcgtacgctgagagagacattggagatgcatatgctactgaagttgtcgccctcaa 487 | || |||| ||||| || |||||||| | ||| ||||| ||||||||||| ||||||| Sbjct: 1750 tagactgtacactgagggaaacattggacaggcaaatgctgctgaagttgtccccctcaa 1691 Query: 488 taccctccaagatgccagcaacaccaacatcaatgccaacgacgttctcaattgtaatgt 547 | || |||||||||||||| |||||||||| | ||| || || || || |||||||| | Sbjct: 1690 ttccttccaagatgccagcgacaccaacattgacgccgaccacattttcgattgtaatat 1631 Query: 548 tgcttataatggggagagcatttttgtcatacttgctatcggggtgttcgccgtagtttc 607 ||||||| || |||||||||||| | ||||| ||| ||| || ||||| || |||||| Sbjct: 1630 tgcttatcattgggagagcatttctatcatatttgtcatcaggatgttcaccaaagtttc 1571 Query: 608 cagtgatcctgatggccatcgagacattgtgcatgctcacatcagctatatacacattcc 667 | |||||||||||||||||||| ||||||| |||||||||||||| ||| ||||| ||| Sbjct: 1570 cggtgatcctgatggccatcgaaacattgtccatgctcacatcagatatgtacacgttct 1511 Query: 668 ttacatatccttccgcgtcctggagcagtcttgattctgatcccatgcaacgagttcaca 727 | ||||| || ||| || |||||||| ||||||||||||||||| |||| ||||| || Sbjct: 1510 tcacata-ccctccacgccctggagcggtcttgattctgatcccgtgcattgagttgacg 1452 Query: 728 atgcgga 734 ||||||| Sbjct: 1451 atgcgga 1445
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 244 bits (123), Expect = 3e-61 Identities = 352/427 (82%), Gaps = 1/427 (0%) Strand = Plus / Minus Query: 308 aagaactgccaccgttgtagcagattggtgtctcttcacaatctgttttgagttgctcgc 367 ||||||| ||||| | ||||| |||||||||| | ||||||||||| |||||||||| | Sbjct: 34737333 aagaacttccaccatcatagcaaattggtgtctgtccacaatctgttctgagttgctcac 34737274 Query: 368 acgactctggggtcacggagttggaatacccttggatacgtgagcaattccatggatatc 427 | ||||||||| |||| ||||| ||||| |||| |||| | || |||||||| |||| Sbjct: 34737273 atgactctgggatcacagagtttgaataaccttcgataagcgaacaattccagggatgca 34737214 Query: 428 tggatcgtacgctgagagagacattggagatgcatatgctactgaagttgtcgccctcaa 487 | || |||| ||||| || |||||||| | ||| ||||| ||||||||||| ||||||| Sbjct: 34737213 tagactgtacactgagggaaacattggacaggcaaatgctgctgaagttgtccccctcaa 34737154 Query: 488 taccctccaagatgccagcaacaccaacatcaatgccaacgacgttctcaattgtaatgt 547 | || |||||||||||||| |||||||||| | ||| || || || || |||||||| | Sbjct: 34737153 ttccttccaagatgccagcgacaccaacattgacgccgaccacattttcgattgtaatat 34737094 Query: 548 tgcttataatggggagagcatttttgtcatacttgctatcggggtgttcgccgtagtttc 607 ||||||| || |||||||||||| | ||||| ||| ||| || ||||| || |||||| Sbjct: 34737093 tgcttatcattgggagagcatttctatcatatttgtcatcaggatgttcaccaaagtttc 34737034 Query: 608 cagtgatcctgatggccatcgagacattgtgcatgctcacatcagctatatacacattcc 667 | |||||||||||||||||||| ||||||| |||||||||||||| ||| ||||| ||| Sbjct: 34737033 cggtgatcctgatggccatcgaaacattgtccatgctcacatcagatatgtacacgttct 34736974 Query: 668 ttacatatccttccgcgtcctggagcagtcttgattctgatcccatgcaacgagttcaca 727 | ||||| || ||| || |||||||| ||||||||||||||||| |||| ||||| || Sbjct: 34736973 tcacata-ccctccacgccctggagcggtcttgattctgatcccgtgcattgagttgacg 34736915 Query: 728 atgcgga 734 ||||||| Sbjct: 34736914 atgcgga 34736908
>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete sequence Length = 164352 Score = 244 bits (123), Expect = 3e-61 Identities = 352/427 (82%), Gaps = 1/427 (0%) Strand = Plus / Plus Query: 308 aagaactgccaccgttgtagcagattggtgtctcttcacaatctgttttgagttgctcgc 367 ||||||| ||||| | ||||| |||||||||| | ||||||||||| |||||||||| | Sbjct: 125317 aagaacttccaccatcatagcaaattggtgtctgtccacaatctgttctgagttgctcac 125376 Query: 368 acgactctggggtcacggagttggaatacccttggatacgtgagcaattccatggatatc 427 | ||||||||| |||| ||||| ||||| |||| |||| | || |||||||| |||| Sbjct: 125377 atgactctgggatcacagagtttgaataaccttcgataagcgaacaattccagggatgca 125436 Query: 428 tggatcgtacgctgagagagacattggagatgcatatgctactgaagttgtcgccctcaa 487 | || |||| ||||| || |||||||| | ||| ||||| ||||||||||| ||||||| Sbjct: 125437 tagactgtacactgagggaaacattggacaggcaaatgctgctgaagttgtccccctcaa 125496 Query: 488 taccctccaagatgccagcaacaccaacatcaatgccaacgacgttctcaattgtaatgt 547 | || |||||||||||||| |||||||||| | ||| || || || || |||||||| | Sbjct: 125497 ttccttccaagatgccagcgacaccaacattgacgccgaccacattttcgattgtaatat 125556 Query: 548 tgcttataatggggagagcatttttgtcatacttgctatcggggtgttcgccgtagtttc 607 ||||||| || |||||||||||| | ||||| ||| ||| || ||||| || |||||| Sbjct: 125557 tgcttatcattgggagagcatttctatcatatttgtcatcaggatgttcaccaaagtttc 125616 Query: 608 cagtgatcctgatggccatcgagacattgtgcatgctcacatcagctatatacacattcc 667 | |||||||||||||||||||| ||||||| |||||||||||||| ||| ||||| ||| Sbjct: 125617 cggtgatcctgatggccatcgaaacattgtccatgctcacatcagatatgtacacgttct 125676 Query: 668 ttacatatccttccgcgtcctggagcagtcttgattctgatcccatgcaacgagttcaca 727 | ||||| || ||| || |||||||| ||||||||||||||||| |||| ||||| || Sbjct: 125677 tcacata-ccctccacgccctggagcggtcttgattctgatcccgtgcattgagttgacg 125735 Query: 728 atgcgga 734 ||||||| Sbjct: 125736 atgcgga 125742
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 244 bits (123), Expect = 3e-61 Identities = 352/427 (82%), Gaps = 1/427 (0%) Strand = Plus / Minus Query: 308 aagaactgccaccgttgtagcagattggtgtctcttcacaatctgttttgagttgctcgc 367 ||||||| ||||| | ||||| |||||||||| | ||||||||||| |||||||||| | Sbjct: 34827405 aagaacttccaccatcatagcaaattggtgtctgtccacaatctgttctgagttgctcac 34827346 Query: 368 acgactctggggtcacggagttggaatacccttggatacgtgagcaattccatggatatc 427 | ||||||||| |||| ||||| ||||| |||| |||| | || |||||||| |||| Sbjct: 34827345 atgactctgggatcacagagtttgaataaccttcgataagcgaacaattccagggatgca 34827286 Query: 428 tggatcgtacgctgagagagacattggagatgcatatgctactgaagttgtcgccctcaa 487 | || |||| ||||| || |||||||| | ||| ||||| ||||||||||| ||||||| Sbjct: 34827285 tagactgtacactgagggaaacattggacaggcaaatgctgctgaagttgtccccctcaa 34827226 Query: 488 taccctccaagatgccagcaacaccaacatcaatgccaacgacgttctcaattgtaatgt 547 | || |||||||||||||| |||||||||| | ||| || || || || |||||||| | Sbjct: 34827225 ttccttccaagatgccagcgacaccaacattgacgccgaccacattttcgattgtaatat 34827166 Query: 548 tgcttataatggggagagcatttttgtcatacttgctatcggggtgttcgccgtagtttc 607 ||||||| || |||||||||||| | ||||| ||| ||| || ||||| || |||||| Sbjct: 34827165 tgcttatcattgggagagcatttctatcatatttgtcatcaggatgttcaccaaagtttc 34827106 Query: 608 cagtgatcctgatggccatcgagacattgtgcatgctcacatcagctatatacacattcc 667 | |||||||||||||||||||| ||||||| |||||||||||||| ||| ||||| ||| Sbjct: 34827105 cggtgatcctgatggccatcgaaacattgtccatgctcacatcagatatgtacacgttct 34827046 Query: 668 ttacatatccttccgcgtcctggagcagtcttgattctgatcccatgcaacgagttcaca 727 | ||||| || ||| || |||||||| ||||||||||||||||| |||| ||||| || Sbjct: 34827045 tcacata-ccctccacgccctggagcggtcttgattctgatcccgtgcattgagttgacg 34826987 Query: 728 atgcgga 734 ||||||| Sbjct: 34826986 atgcgga 34826980
>dbj|AK066209.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058D09, full insert sequence Length = 2279 Score = 244 bits (123), Expect = 3e-61 Identities = 352/427 (82%), Gaps = 1/427 (0%) Strand = Plus / Minus Query: 308 aagaactgccaccgttgtagcagattggtgtctcttcacaatctgttttgagttgctcgc 367 ||||||| ||||| | ||||| |||||||||| | ||||||||||| |||||||||| | Sbjct: 1871 aagaacttccaccatcatagcaaattggtgtctgtccacaatctgttctgagttgctcac 1812 Query: 368 acgactctggggtcacggagttggaatacccttggatacgtgagcaattccatggatatc 427 | ||||||||| |||| ||||| ||||| |||| |||| | || |||||||| |||| Sbjct: 1811 atgactctgggatcacagagtttgaataaccttcgataagcgaacaattccagggatgca 1752 Query: 428 tggatcgtacgctgagagagacattggagatgcatatgctactgaagttgtcgccctcaa 487 | || |||| ||||| || |||||||| | ||| ||||| ||||||||||| ||||||| Sbjct: 1751 tagactgtacactgagggaaacattggacaggcaaatgctgctgaagttgtccccctcaa 1692 Query: 488 taccctccaagatgccagcaacaccaacatcaatgccaacgacgttctcaattgtaatgt 547 | || |||||||||||||| |||||||||| | ||| || || || || |||||||| | Sbjct: 1691 ttccttccaagatgccagcgacaccaacattgacgccgaccacattttcgattgtaatat 1632 Query: 548 tgcttataatggggagagcatttttgtcatacttgctatcggggtgttcgccgtagtttc 607 ||||||| || |||||||||||| | ||||| ||| ||| || ||||| || |||||| Sbjct: 1631 tgcttatcattgggagagcatttctatcatatttgtcatcaggatgttcaccaaagtttc 1572 Query: 608 cagtgatcctgatggccatcgagacattgtgcatgctcacatcagctatatacacattcc 667 | |||||||||||||||||||| ||||||| |||||||||||||| ||| ||||| ||| Sbjct: 1571 cggtgatcctgatggccatcgaaacattgtccatgctcacatcagatatgtacacgttct 1512 Query: 668 ttacatatccttccgcgtcctggagcagtcttgattctgatcccatgcaacgagttcaca 727 | ||||| || ||| || |||||||| ||||||||||||||||| |||| ||||| || Sbjct: 1511 tcacata-ccctccacgccctggagcggtcttgattctgatcccgtgcattgagttgacg 1453 Query: 728 atgcgga 734 ||||||| Sbjct: 1452 atgcgga 1446
>ref|XM_477242.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1797 Score = 103 bits (52), Expect = 8e-19 Identities = 113/132 (85%), Gaps = 1/132 (0%) Strand = Plus / Minus Query: 592 tgttcgccgtagtttccagtgatcctgatggccatcgagacattgtgcatgctcacatca 651 ||||| || ||||||||||||||||||||||| || |||||||||| ||||||||||||| Sbjct: 1219 tgttccccatagtttccagtgatcctgatggctattgagacattgtccatgctcacatca 1160 Query: 652 gctatatacacattccttacatatccttccgcgtcctggagcagtcttgattctgatccc 711 ||||| || | || | ||||| || ||||| ||||| ||||||||||||||||| || Sbjct: 1159 gctatgtatatgtttttcacata-cccaccgcgccctggggcagtcttgattctgattcc 1101 Query: 712 atgcaacgagtt 723 ||||| |||||| Sbjct: 1100 atgcaccgagtt 1089
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 103 bits (52), Expect = 8e-19 Identities = 113/132 (85%), Gaps = 1/132 (0%) Strand = Plus / Plus Query: 592 tgttcgccgtagtttccagtgatcctgatggccatcgagacattgtgcatgctcacatca 651 ||||| || ||||||||||||||||||||||| || |||||||||| ||||||||||||| Sbjct: 8111710 tgttccccatagtttccagtgatcctgatggctattgagacattgtccatgctcacatca 8111769 Query: 652 gctatatacacattccttacatatccttccgcgtcctggagcagtcttgattctgatccc 711 ||||| || | || | ||||| || ||||| ||||| ||||||||||||||||| || Sbjct: 8111770 gctatgtatatgtttttcacata-cccaccgcgccctggggcagtcttgattctgattcc 8111828 Query: 712 atgcaacgagtt 723 ||||| |||||| Sbjct: 8111829 atgcaccgagtt 8111840
>dbj|AP003738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1058_C08 Length = 117923 Score = 103 bits (52), Expect = 8e-19 Identities = 113/132 (85%), Gaps = 1/132 (0%) Strand = Plus / Plus Query: 592 tgttcgccgtagtttccagtgatcctgatggccatcgagacattgtgcatgctcacatca 651 ||||| || ||||||||||||||||||||||| || |||||||||| ||||||||||||| Sbjct: 45482 tgttccccatagtttccagtgatcctgatggctattgagacattgtccatgctcacatca 45541 Query: 652 gctatatacacattccttacatatccttccgcgtcctggagcagtcttgattctgatccc 711 ||||| || | || | ||||| || ||||| ||||| ||||||||||||||||| || Sbjct: 45542 gctatgtatatgtttttcacata-cccaccgcgccctggggcagtcttgattctgattcc 45600 Query: 712 atgcaacgagtt 723 ||||| |||||| Sbjct: 45601 atgcaccgagtt 45612
>dbj|AK102293.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089L01, full insert sequence Length = 1798 Score = 103 bits (52), Expect = 8e-19 Identities = 113/132 (85%), Gaps = 1/132 (0%) Strand = Plus / Minus Query: 592 tgttcgccgtagtttccagtgatcctgatggccatcgagacattgtgcatgctcacatca 651 ||||| || ||||||||||||||||||||||| || |||||||||| ||||||||||||| Sbjct: 1220 tgttccccatagtttccagtgatcctgatggctattgagacattgtccatgctcacatca 1161 Query: 652 gctatatacacattccttacatatccttccgcgtcctggagcagtcttgattctgatccc 711 ||||| || | || | ||||| || ||||| ||||| ||||||||||||||||| || Sbjct: 1160 gctatgtatatgtttttcacata-cccaccgcgccctggggcagtcttgattctgattcc 1102 Query: 712 atgcaacgagtt 723 ||||| |||||| Sbjct: 1101 atgcaccgagtt 1090
>gb|CP000107.1| Ehrlichia canis str. Jake, complete genome Length = 1315030 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 231 gaacatatgcagtaaagaattta 253 ||||||||||||||||||||||| Sbjct: 925651 gaacatatgcagtaaagaattta 925673
>ref|NM_194699.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0020E23.16), mRNA Length = 2445 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 494 ccaagatgccagcaacaccaa 514 ||||||||||||||||||||| Sbjct: 1779 ccaagatgccagcaacaccaa 1759
>gb|AC137615.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0053F13, from chromosome 5, complete sequence Length = 149538 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 494 ccaagatgccagcaacaccaa 514 ||||||||||||||||||||| Sbjct: 143151 ccaagatgccagcaacaccaa 143131
>gb|AC137607.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0006O14, complete sequence Length = 142764 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 494 ccaagatgccagcaacaccaa 514 ||||||||||||||||||||| Sbjct: 26622 ccaagatgccagcaacaccaa 26602
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 494 ccaagatgccagcaacaccaa 514 ||||||||||||||||||||| Sbjct: 1713038 ccaagatgccagcaacaccaa 1713058
>gb|AC025098.5| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0020E23, complete sequence Length = 151359 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 494 ccaagatgccagcaacaccaa 514 ||||||||||||||||||||| Sbjct: 110135 ccaagatgccagcaacaccaa 110155
>gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome Length = 1176248 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 231 gaacatatgcagtaaagaatt 251 ||||||||||||||||||||| Sbjct: 341365 gaacatatgcagtaaagaatt 341345
>gb|AC008699.6| Homo sapiens chromosome 5 clone CTB-73D21, complete sequence Length = 169349 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 ggttcagagctatatacatga 104 ||||||||||||||||||||| Sbjct: 116449 ggttcagagctatatacatga 116469
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 494 ccaagatgccagcaacaccaa 514 ||||||||||||||||||||| Sbjct: 1713038 ccaagatgccagcaacaccaa 1713058
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 494 ccaagatgccagcaacaccaa 514 ||||||||||||||||||||| Sbjct: 10243057 ccaagatgccagcaacaccaa 10243037
>dbj|AK072882.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149K11, full insert sequence Length = 2633 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 494 ccaagatgccagcaacaccaa 514 ||||||||||||||||||||| Sbjct: 1860 ccaagatgccagcaacaccaa 1840
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 494 ccaagatgccagcaacaccaa 514 ||||||||||||||||||||| Sbjct: 1712989 ccaagatgccagcaacaccaa 1713009
>gb|L21975.1|PUMPRHPA Petroselinum crispum homeodomain protein (PRHP) mRNA, complete cds Length = 4104 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 698 ttgattctgatcccatgcaac 718 ||||||||||||||||||||| Sbjct: 406 ttgattctgatcccatgcaac 426 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,372,013 Number of Sequences: 3902068 Number of extensions: 5372013 Number of successful extensions: 110435 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 110144 Number of HSP's gapped (non-prelim): 276 length of query: 734 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 711 effective length of database: 17,143,297,704 effective search space: 12188884667544 effective search space used: 12188884667544 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)