ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7a09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_194776.1| Oryza sativa (japonica cultivar-group) hypothet... 42 2.3
2ref|XM_382513.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 42 2.3
3gb|AC124482.3| Mus musculus BAC clone RP24-120B3 from chromosome... 42 2.3
4gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.3
5gb|AC074283.3| Oryza sativa chromosome 10 clone OSJNBa0087H07, c... 42 2.3
6gb|AC099733.2| Oryza sativa chromosome 10 clone OSJNAa0087H07, c... 42 2.3
7dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
8dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome 42 2.3
9emb|BX005150.5| Zebrafish DNA sequence from clone CH211-105J21 i... 42 2.3
10gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.3
11emb|CT009600.12| Mouse DNA sequence from clone RP23-76M10 on chr... 42 2.3
12ref|XM_636744.1| Dictyostelium discoideum hypothetical protein (... 40 9.3
13ref|XM_464832.1| Oryza sativa (japonica cultivar-group), mRNA 40 9.3
14gb|AC099629.6| Mus musculus chromosome 15, clone RP24-86K17, com... 40 9.3
15emb|BX950868.13| Zebrafish DNA sequence from clone DKEY-54I3 in ... 40 9.3
16emb|X64269.1|HSMTFDNA H.sapiens gene MtTF1 for mitochondrial tra... 40 9.3
17gb|AF375518.1| Melanophryniscus rubriventris 16S ribosomal RNA g... 40 9.3
18emb|AL662787.6| Human DNA sequence from clone RP11-162J2 on chro... 40 9.3
19emb|AL135940.11| Human DNA sequence from clone RP5-896L12 on chr... 40 9.3
20emb|AL604029.12| Mouse DNA sequence from clone RP23-155J3 on chr... 40 9.3
21gb|AC090914.9| Homo sapiens chromosome 18, clone RP11-739L10, co... 40 9.3
22emb|BX322231.13| Zebrafish DNA sequence from clone CH211-145C1 i... 40 9.3
23gb|AC158973.3| Mus musculus chromosome 15, clone RP24-236A19, co... 40 9.3
24gb|AC110583.3| Homo sapiens chromosome 18, clone RP11-1113L12, c... 40 9.3
25gb|AC023170.10| Homo sapiens chromosome 10 clone RP11-373P23, co... 40 9.3
26gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 40 9.3
27emb|AL116299.1|CNS01D2R Botrytis cinerea strain T4 cDNA library 40 9.3
28emb|BX537289.6| Zebrafish DNA sequence from clone DKEY-35M8 in l... 40 9.3
29dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
30gb|AC093759.3| Homo sapiens BAC clone RP11-67M1 from 4, complete... 40 9.3
31gb|AC114800.5| Homo sapiens BAC clone RP11-776M7 from 2, complet... 40 9.3
32gb|AC020889.3|AC020889 Genomic sequence for Arabidopsis thaliana... 40 9.3
33dbj|AP005511.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
34dbj|AP004018.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
35emb|AL929134.20| Zebrafish DNA sequence from clone CH211-11I22 i... 40 9.3
36dbj|AK106350.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.3
37emb|Z60192.1|HS193E9R H.sapiens CpG island DNA genomic Mse1 frag... 40 9.3
38emb|BX649263.6| Zebrafish DNA sequence from clone DKEY-21O22 in ... 40 9.3
39gb|L27075.1|RATACITLY Rattus norvegicus ATP-citrate lyase gene, ... 40 9.3 
>ref|NM_194776.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0087H07.13), mRNA
          Length = 972

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 608 atcacagctaggctttgcttctccaaatcaaactcaagaat 648
           |||||||| ||| ||||| | ||||||||||||| ||||||
Sbjct: 515 atcacagcaagggtttgcctatccaaatcaaactgaagaat 475
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>ref|XM_382513.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02337.1)
           partial mRNA
          Length = 1218

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 163 agatcctgcaccaccagtctt 183
           |||||||||||||||||||||
Sbjct: 222 agatcctgcaccaccagtctt 202
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>gb|AC124482.3| Mus musculus BAC clone RP24-120B3 from chromosome 14, complete sequence
          Length = 165934

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 58     aatgatggtggtgatacaagt 78
              |||||||||||||||||||||
Sbjct: 134793 aatgatggtggtgatacaagt 134773
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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                        
Query: 608     atcacagctaggctttgcttctccaaatcaaactcaagaat 648
               |||||||| ||| ||||| | ||||||||||||| ||||||
Sbjct: 2271263 atcacagcaagggtttgcctatccaaatcaaactgaagaat 2271303
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>gb|AC074283.3| Oryza sativa chromosome 10 clone OSJNBa0087H07, complete sequence
          Length = 156654

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 608   atcacagctaggctttgcttctccaaatcaaactcaagaat 648
             |||||||| ||| ||||| | ||||||||||||| ||||||
Sbjct: 96917 atcacagcaagggtttgcctatccaaatcaaactgaagaat 96957
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>gb|AC099733.2| Oryza sativa chromosome 10 clone OSJNAa0087H07, complete sequence
          Length = 132268

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 608 atcacagctaggctttgcttctccaaatcaaactcaagaat 648
           |||||||| ||| ||||| | ||||||||||||| ||||||
Sbjct: 263 atcacagcaagggtttgcctatccaaatcaaactgaagaat 303
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                        
Query: 608     atcacagctaggctttgcttctccaaatcaaactcaagaat 648
               |||||||| ||| ||||| | ||||||||||||| ||||||
Sbjct: 2271263 atcacagcaagggtttgcctatccaaatcaaactgaagaat 2271303
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>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome
          Length = 4202352

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 330     ccataaagacgacgccgtgtg 350
               |||||||||||||||||||||
Sbjct: 3968568 ccataaagacgacgccgtgtg 3968548
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>emb|BX005150.5| Zebrafish DNA sequence from clone CH211-105J21 in linkage group 6,
             complete sequence
          Length = 167946

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 654   caaaattcccaacaagaatcc 674
             |||||||||||||||||||||
Sbjct: 53205 caaaattcccaacaagaatcc 53185
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                        
Query: 608     atcacagctaggctttgcttctccaaatcaaactcaagaat 648
               |||||||| ||| ||||| | ||||||||||||| ||||||
Sbjct: 2271214 atcacagcaagggtttgcctatccaaatcaaactgaagaat 2271254
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>emb|CT009600.12| Mouse DNA sequence from clone RP23-76M10 on chromosome 14, complete
              sequence
          Length = 217257

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 58     aatgatggtggtgatacaagt 78
              |||||||||||||||||||||
Sbjct: 195986 aatgatggtggtgatacaagt 196006
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>ref|XM_636744.1| Dictyostelium discoideum hypothetical protein (DDB0220595), partial
            mRNA
          Length = 1882

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 632  aaatcaaactcaagaattccaacaaaat 659
            |||||||| |||| ||||||||||||||
Sbjct: 1291 aaatcaaaatcaacaattccaacaaaat 1318
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>ref|XM_464832.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1403

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 303  tcttgaactgcaaagactgaagatggaccataaaga 338
            ||||||||| || ||||| |||||||||||| ||||
Sbjct: 1126 tcttgaactccatagactcaagatggaccatgaaga 1091
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>gb|AC099629.6| Mus musculus chromosome 15, clone RP24-86K17, complete sequence
          Length = 175809

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   aaagtgagaaaagcaatcag 164
             ||||||||||||||||||||
Sbjct: 15053 aaagtgagaaaagcaatcag 15072
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>emb|BX950868.13| Zebrafish DNA sequence from clone DKEY-54I3 in linkage group 5, complete
              sequence
          Length = 204339

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 620    ctttgcttctccaaatcaaa 639
              ||||||||||||||||||||
Sbjct: 149870 ctttgcttctccaaatcaaa 149889
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>emb|X64269.1|HSMTFDNA H.sapiens gene MtTF1 for mitochondrial transcription factor 1
          Length = 2774

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   aaggccttggaatctgcatt 53
            ||||||||||||||||||||
Sbjct: 1785 aaggccttggaatctgcatt 1804
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>gb|AF375518.1| Melanophryniscus rubriventris 16S ribosomal RNA gene, partial
           sequence; mitochondrial gene for mitochondrial product
          Length = 828

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 571 ataatacccattttcaagaa 590
           ||||||||||||||||||||
Sbjct: 556 ataatacccattttcaagaa 575
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>emb|AL662787.6| Human DNA sequence from clone RP11-162J2 on chromosome 9 Contains the
             3' end of the gene for protein kinase anchoring protein
             GKAP42 (FKSG21), complete sequence
          Length = 63605

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   ctggtctcaccaagtttctt 306
             ||||||||||||||||||||
Sbjct: 56716 ctggtctcaccaagtttctt 56697
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>emb|AL135940.11| Human DNA sequence from clone RP5-896L12 on chromosome 20 Contains STSs
             and GSSs, complete sequence
          Length = 105964

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 640   ctcaagaattccaacaaaattccc 663
             ||||||||||||||||| ||||||
Sbjct: 58196 ctcaagaattccaacaatattccc 58173
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>emb|AL604029.12| Mouse DNA sequence from clone RP23-155J3 on chromosome 11 Contains an
             H3 histone family 3A (H3f3a) pseudogene, the Zfp179 gene
             for zinc finger protein 179, the gene for the possible
             ortholog of H. sapiens microfibrillar-associated protein 4
             (MFAP4) (1110007F23Rik), the Mapk7 gene for
             mitogen-activated kinase 7, a novel gene (3110043A19Rik),
             the Eppb9 gene for endothelial precursor protein B9, the
             Epn2 gene for epsin 2, a novel gene and three CpG islands,
             complete sequence
          Length = 204653

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   ctgtaacataaaaagtgaga 153
             ||||||||||||||||||||
Sbjct: 46448 ctgtaacataaaaagtgaga 46467
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>gb|AC090914.9| Homo sapiens chromosome 18, clone RP11-739L10, complete sequence
          Length = 144425

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 140   cataaaaagtgagaaaagcaatca 163
             |||||||||||||||||| |||||
Sbjct: 93899 cataaaaagtgagaaaagaaatca 93876
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>emb|BX322231.13| Zebrafish DNA sequence from clone CH211-145C1 in linkage group 9,
              complete sequence
          Length = 166681

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 140    cataaaaagtgagaaaagcaatca 163
              |||||||||| |||||||||||||
Sbjct: 164094 cataaaaagttagaaaagcaatca 164117
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>gb|AC158973.3| Mus musculus chromosome 15, clone RP24-236A19, complete sequence
          Length = 187091

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 145    aaagtgagaaaagcaatcag 164
              ||||||||||||||||||||
Sbjct: 186194 aaagtgagaaaagcaatcag 186213
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>gb|AC110583.3| Homo sapiens chromosome 18, clone RP11-1113L12, complete sequence
          Length = 131701

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 140    cataaaaagtgagaaaagcaatca 163
              |||||||||||||||||| |||||
Sbjct: 110907 cataaaaagtgagaaaagaaatca 110930
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>gb|AC023170.10| Homo sapiens chromosome 10 clone RP11-373P23, complete sequence
          Length = 195448

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 34     aaggccttggaatctgcatt 53
              ||||||||||||||||||||
Sbjct: 138181 aaggccttggaatctgcatt 138162
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>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 196     gacaacacggacgacctcat 215
               ||||||||||||||||||||
Sbjct: 1048778 gacaacacggacgacctcat 1048759
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>emb|AL116299.1|CNS01D2R Botrytis cinerea strain T4 cDNA library
          Length = 636

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 645 gaattccaacaaaattcccaacaa 668
           ||||| ||||||||||||||||||
Sbjct: 339 gaattgcaacaaaattcccaacaa 362
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>emb|BX537289.6| Zebrafish DNA sequence from clone DKEY-35M8 in linkage group 5,
             complete sequence
          Length = 135274

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 140   cataaaaagtgagaaaagcaatca 163
             |||||||||| |||||||||||||
Sbjct: 54150 cataaaaagttagaaaagcaatca 54173
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                   
Query: 303     tcttgaactgcaaagactgaagatggaccataaaga 338
               ||||||||| || ||||| |||||||||||| ||||
Sbjct: 8453910 tcttgaactccatagactcaagatggaccatgaaga 8453945
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>gb|AC093759.3| Homo sapiens BAC clone RP11-67M1 from 4, complete sequence
          Length = 177807

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 434    agttcaatagttcttccaag 453
              ||||||||||||||||||||
Sbjct: 147490 agttcaatagttcttccaag 147471
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>gb|AC114800.5| Homo sapiens BAC clone RP11-776M7 from 2, complete sequence
          Length = 18311

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   aacataaaaagtgagaaaag 157
             ||||||||||||||||||||
Sbjct: 13623 aacataaaaagtgagaaaag 13642
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>gb|AC020889.3|AC020889 Genomic sequence for Arabidopsis thaliana BAC T1N15 from chromosome I,
             complete sequence
          Length = 95295

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 427   attgttcagttcaatagttc 446
             ||||||||||||||||||||
Sbjct: 58126 attgttcagttcaatagttc 58107
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>dbj|AP005511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0011N12
          Length = 158586

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 303    tcttgaactgcaaagactgaagatggaccataaaga 338
              ||||||||| || ||||| |||||||||||| ||||
Sbjct: 106760 tcttgaactccatagactcaagatggaccatgaaga 106795
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>dbj|AP004018.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1113_G05
          Length = 131445

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 303  tcttgaactgcaaagactgaagatggaccataaaga 338
            ||||||||| || ||||| |||||||||||| ||||
Sbjct: 3180 tcttgaactccatagactcaagatggaccatgaaga 3215
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>emb|AL929134.20| Zebrafish DNA sequence from clone CH211-11I22 in linkage group 25,
             complete sequence
          Length = 162177

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 638   aactcaagaattccaacaaa 657
             ||||||||||||||||||||
Sbjct: 34205 aactcaagaattccaacaaa 34224
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>dbj|AK106350.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-H10, full
            insert sequence
          Length = 1403

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 303  tcttgaactgcaaagactgaagatggaccataaaga 338
            ||||||||| || ||||| |||||||||||| ||||
Sbjct: 1126 tcttgaactccatagactcaagatggaccatgaaga 1091
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>emb|Z60192.1|HS193E9R H.sapiens CpG island DNA genomic Mse1 fragment, clone 193e9,
          reverse read cpg193e9.rt1a
          Length = 178

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 34 aaggccttggaatctgcatt 53
          ||||||||||||||||||||
Sbjct: 12 aaggccttggaatctgcatt 31
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>emb|BX649263.6| Zebrafish DNA sequence from clone DKEY-21O22 in linkage group 4, complete
              sequence
          Length = 143254

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 140    cataaaaagtgagaaaagcaatca 163
              |||||||||| |||||||||||||
Sbjct: 140271 cataaaaagtaagaaaagcaatca 140248
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>gb|L27075.1|RATACITLY Rattus norvegicus ATP-citrate lyase gene, exons 1 through 7
          Length = 13553

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 111  ccccatagaatttactagaa 130
            ||||||||||||||||||||
Sbjct: 1845 ccccatagaatttactagaa 1826


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,519,005
Number of Sequences: 3902068
Number of extensions: 6519005
Number of successful extensions: 130760
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 130541
Number of HSP's gapped (non-prelim): 219
length of query: 677
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 654
effective length of database: 17,143,297,704
effective search space: 11211716698416
effective search space used: 11211716698416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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