ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6l09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK063731.1| Oryza sativa (japonica cultivar-group) cDNA clon... 236 7e-59
2gb|AC123528.2| Oryza sativa chromosome 11 clone OSJNBa0078E03, ... 196 6e-47
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 196 6e-47
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 196 6e-47
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 196 6e-47
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 196 6e-47
7emb|BX000508.1|CNS08CDY Oryza sativa chromosome 12, . BAC OJ1575... 196 6e-47
8dbj|AK106395.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 6e-07
9gb|AC158220.4| Mus musculus chromosome 7, clone RP23-278M8, comp... 42 2.2
10emb|AL590346.1|ATT2K12 Arabidopsis thaliana DNA chromosome 5, BA... 42 2.2
11emb|AL391712.1|ATT5E8 Arabidopsis thaliana DNA chromosome 5, BAC... 42 2.2
12gb|AC124821.5| Mus musculus chromosome 1, clone RP24-211L16, com... 40 8.8
13gb|AC155248.2| Mus musculus BAC clone RP24-243O10 from chromosom... 40 8.8
14gb|AC146037.1| Pan troglodytes BAC clone RP43-44A5 from 7, compl... 40 8.8
15gb|AC138591.10| Mus musculus chromosome 3, clone RP24-224A19, co... 40 8.8
16emb|AL441885.9| Human DNA sequence from clone RP11-267L15 on chr... 40 8.8
17emb|Y14816.1|SAY14816 Staphylococcus aureus DNA for ORF231, ORF1... 40 8.8
18emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g... 40 8.8
19gb|AF483216.1| Mus musculus minor histocompatibility antigen H13... 40 8.8
20dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, co... 40 8.8
21gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete... 40 8.8
22gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co... 40 8.8
23gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl... 40 8.8
24dbj|AK038080.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 40 8.8
25gb|AC149286.4| Pan troglodytes BAC clone CH251-514L10 from chrom... 40 8.8
26gb|AC154535.2| Mus musculus BAC clone RP23-447M9 from chromosome... 40 8.8
27gb|AC137517.6| Homo sapiens 3 BAC RP11-671N3 (Roswell Park Cance... 40 8.8
28dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com... 40 8.8
29dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic... 40 8.8
30gb|AC004492.1|AC004492 Homo sapiens BAC clone CTA-363E19 from 7q... 40 8.8
31emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA2... 40 8.8
32gb|AF049237.1|AF049237 Bombyx mori antibacterial peptide enbocin... 40 8.8
33emb|AJ938182.1| Staphylococcus aureus RF122 complete genome 40 8.8 
>dbj|AK063731.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-E08, full
            insert sequence
          Length = 1349

 Score =  236 bits (119), Expect = 7e-59
 Identities = 173/191 (90%)
 Strand = Plus / Minus

                                                                        
Query: 225  atcaactttgctcttggaaatttggaaggcaggggtgatccagctgccacagttgcactg 284
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1087 atcaactttgctcttggaaatttggaaggctggggtgatccagctgccacagttgcactg 1028

                                                                        
Query: 285  gatccctgaccagttgaagtaccctaagcgtgctccgcagtggatacaagacagcttccc 344
            ||| |||||||||||||| || ||||  |||||||||||||||||||| || ||||||||
Sbjct: 1027 gattcctgaccagttgaaatatcctagccgtgctccgcagtggatacacgatagcttccc 968

                                                                        
Query: 345  ctccaaagcgccatcttctactggagtcatccacttgagaggctcgacatacagagagga 404
            ||||||||| || ||||| ||||||||||||||||| |||||||| ||| |||  || ||
Sbjct: 967  ctccaaagcaccgtcttccactggagtcatccacttcagaggctcaacaaacaacgatga 908

                       
Query: 405  acaatcttgtt 415
             ||||||||||
Sbjct: 907  gcaatcttgtt 897



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 83/100 (83%)
 Strand = Plus / Minus

                                                                       
Query: 451 tgccactcaaagctagagttgccctcaccaggagtgtgaccgataacattgtcctgtgct 510
           ||||||| ||||| ||| |  |||||||||||||| || |  | ||||||| ||||  | 
Sbjct: 861 tgccactgaaagcaagattcaccctcaccaggagtatggctcacaacattgccctgcaca 802

                                                   
Query: 511 gcgacaatcctcctgcatttcttgcagcggtatgctgttt 550
           || ||||| ||||||||||| |||||||||||||||||||
Sbjct: 801 gcaacaattctcctgcattttttgcagcggtatgctgttt 762



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                    
Query: 588 attaggctgtcgagtaaccccaggatcgtcttcaaatacatggttccctattttctc 644
           ||||||||||| || ||  |||||||| ||||||||||||| | | |||||||||||
Sbjct: 724 attaggctgtccagaaagaccaggatcatcttcaaatacatagcttcctattttctc 668
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>gb|AC123528.2| Oryza sativa chromosome 11 clone  OSJNBa0078E03, complete sequence
          Length = 149493

 Score =  196 bits (99), Expect = 6e-47
 Identities = 132/143 (92%)
 Strand = Plus / Plus

                                                                         
Query: 225   atcaactttgctcttggaaatttggaaggcaggggtgatccagctgccacagttgcactg 284
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 53743 atcaactttgctcttggaaatttggaaggctggggtgatccagctgccacagttgcactg 53802

                                                                         
Query: 285   gatccctgaccagttgaagtaccctaagcgtgctccgcagtggatacaagacagcttccc 344
             ||| |||||||||||||| || ||||  |||||||||||||||||||| || ||||||||
Sbjct: 53803 gattcctgaccagttgaaatatcctagccgtgctccgcagtggatacacgatagcttccc 53862

                                    
Query: 345   ctccaaagcgccatcttctactg 367
             ||||||||| || ||||| ||||
Sbjct: 53863 ctccaaagcaccgtcttccactg 53885



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 83/100 (83%)
 Strand = Plus / Plus

                                                                         
Query: 451   tgccactcaaagctagagttgccctcaccaggagtgtgaccgataacattgtcctgtgct 510
             ||||||| ||||| ||| |  |||||||||||||| || |  | ||||||| ||||  | 
Sbjct: 54215 tgccactgaaagcaagattcaccctcaccaggagtatggctcacaacattgccctgcaca 54274

                                                     
Query: 511   gcgacaatcctcctgcatttcttgcagcggtatgctgttt 550
             || ||||| ||||||||||| |||||||||||||||||||
Sbjct: 54275 gcaacaattctcctgcattttttgcagcggtatgctgttt 54314



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                      
Query: 588   attaggctgtcgagtaaccccaggatcgtcttcaaatacatggttccctattttctc 644
             ||||||||||| || ||  |||||||| ||||||||||||| | | |||||||||||
Sbjct: 54352 attaggctgtccagaaagaccaggatcatcttcaaatacatagcttcctattttctc 54408



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                
Query: 365   ctggagtcatccacttgagaggctcgacatacagagaggaacaatcttgtt 415
             |||||||||||||||| |||||||| ||| |||  || || ||||||||||
Sbjct: 54129 ctggagtcatccacttcagaggctcaacaaacaacgatgagcaatcttgtt 54179
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  196 bits (99), Expect = 6e-47
 Identities = 132/143 (92%)
 Strand = Plus / Plus

                                                                           
Query: 225     atcaactttgctcttggaaatttggaaggcaggggtgatccagctgccacagttgcactg 284
               |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 1651848 atcaactttgctcttggaaatttggaaggctggggtgatccaactgccacagttgcactg 1651907

                                                                           
Query: 285     gatccctgaccagttgaagtaccctaagcgtgctccgcagtggatacaagacagcttccc 344
               ||| |||||||||||||| || ||||  |||||||||||||||||||| || ||||||||
Sbjct: 1651908 gattcctgaccagttgaaatatcctagccgtgctccgcagtggatacacgatagcttccc 1651967

                                      
Query: 345     ctccaaagcgccatcttctactg 367
               ||||||||| |||||||| ||||
Sbjct: 1651968 ctccaaagcaccatcttccactg 1651990



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 92/112 (82%)
 Strand = Plus / Plus

                                                                           
Query: 436     cctttcctcttgtcgtgccactcaaagctagagttgccctcaccaggagtgtgaccgata 495
               ||||| |||||||  ||||||| ||||| ||| |  ||||||||||||||||| |  | |
Sbjct: 1652243 ccttttctcttgttttgccactgaaagcaagattcaccctcaccaggagtgtggctcaca 1652302

                                                                   
Query: 496     acattgtcctgtgctgcgacaatcctcctgcatttcttgcagcggtatgctg 547
               |||||| ||||  | || | ||| ||||||||||| ||||||||||||||||
Sbjct: 1652303 acattgccctgcacagcaataattctcctgcattttttgcagcggtatgctg 1652354



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                        
Query: 588     attaggctgtcgagtaaccccaggatcgtcttcaaatacatggttccctattttctc 644
               ||||||||||| || ||  |||||||| ||||||||||||| | | |||||||||||
Sbjct: 1652395 attaggctgtccagaaagaccaggatcatcttcaaatacatagcttcctattttctc 1652451



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                  
Query: 365     ctggagtcatccacttgagaggctcgacatacagagaggaacaatcttgtt 415
               |||||||||||||||| |||||||| ||| |||  || || ||||||||||
Sbjct: 1652172 ctggagtcatccacttcagaggctcaacaaacaacgatgagcaatcttgtt 1652222
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  196 bits (99), Expect = 6e-47
 Identities = 132/143 (92%)
 Strand = Plus / Plus

                                                                           
Query: 225     atcaactttgctcttggaaatttggaaggcaggggtgatccagctgccacagttgcactg 284
               |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1698736 atcaactttgctcttggaaatttggaaggctggggtgatccagctgccacagttgcactg 1698795

                                                                           
Query: 285     gatccctgaccagttgaagtaccctaagcgtgctccgcagtggatacaagacagcttccc 344
               ||| |||||||||||||| || ||||  |||||||||||||||||||| || ||||||||
Sbjct: 1698796 gattcctgaccagttgaaatatcctagccgtgctccgcagtggatacacgatagcttccc 1698855

                                      
Query: 345     ctccaaagcgccatcttctactg 367
               ||||||||| || ||||| ||||
Sbjct: 1698856 ctccaaagcaccgtcttccactg 1698878



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 83/100 (83%)
 Strand = Plus / Plus

                                                                           
Query: 451     tgccactcaaagctagagttgccctcaccaggagtgtgaccgataacattgtcctgtgct 510
               ||||||| ||||| ||| |  |||||||||||||| || |  | ||||||| ||||  | 
Sbjct: 1699208 tgccactgaaagcaagattcaccctcaccaggagtatggctcacaacattgccctgcaca 1699267

                                                       
Query: 511     gcgacaatcctcctgcatttcttgcagcggtatgctgttt 550
               || ||||| ||||||||||| |||||||||||||||||||
Sbjct: 1699268 gcaacaattctcctgcattttttgcagcggtatgctgttt 1699307



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                        
Query: 588     attaggctgtcgagtaaccccaggatcgtcttcaaatacatggttccctattttctc 644
               ||||||||||| || ||  |||||||| ||||||||||||| | | |||||||||||
Sbjct: 1699345 attaggctgtccagaaagaccaggatcatcttcaaatacatagcttcctattttctc 1699401



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                  
Query: 365     ctggagtcatccacttgagaggctcgacatacagagaggaacaatcttgtt 415
               |||||||||||||||| |||||||| ||| |||  || || ||||||||||
Sbjct: 1699122 ctggagtcatccacttcagaggctcaacaaacaacgatgagcaatcttgtt 1699172
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  196 bits (99), Expect = 6e-47
 Identities = 132/143 (92%)
 Strand = Plus / Plus

                                                                           
Query: 225     atcaactttgctcttggaaatttggaaggcaggggtgatccagctgccacagttgcactg 284
               |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1696457 atcaactttgctcttggaaatttggaaggctggggtgatccagctgccacagttgcactg 1696516

                                                                           
Query: 285     gatccctgaccagttgaagtaccctaagcgtgctccgcagtggatacaagacagcttccc 344
               ||| |||||||||||||| || ||||  |||||||||||||||||||| || ||||||||
Sbjct: 1696517 gattcctgaccagttgaaatatcctagccgtgctccgcagtggatacacgatagcttccc 1696576

                                      
Query: 345     ctccaaagcgccatcttctactg 367
               ||||||||| || ||||| ||||
Sbjct: 1696577 ctccaaagcaccgtcttccactg 1696599



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 83/100 (83%)
 Strand = Plus / Plus

                                                                           
Query: 451     tgccactcaaagctagagttgccctcaccaggagtgtgaccgataacattgtcctgtgct 510
               ||||||| ||||| ||| |  |||||||||||||| || |  | ||||||| ||||  | 
Sbjct: 1696929 tgccactgaaagcaagattcaccctcaccaggagtatggctcacaacattgccctgcaca 1696988

                                                       
Query: 511     gcgacaatcctcctgcatttcttgcagcggtatgctgttt 550
               || ||||| ||||||||||| |||||||||||||||||||
Sbjct: 1696989 gcaacaattctcctgcattttttgcagcggtatgctgttt 1697028



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                        
Query: 588     attaggctgtcgagtaaccccaggatcgtcttcaaatacatggttccctattttctc 644
               ||||||||||| || ||  |||||||| ||||||||||||| | | |||||||||||
Sbjct: 1697066 attaggctgtccagaaagaccaggatcatcttcaaatacatagcttcctattttctc 1697122



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                  
Query: 365     ctggagtcatccacttgagaggctcgacatacagagaggaacaatcttgtt 415
               |||||||||||||||| |||||||| ||| |||  || || ||||||||||
Sbjct: 1696843 ctggagtcatccacttcagaggctcaacaaacaacgatgagcaatcttgtt 1696893
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  196 bits (99), Expect = 6e-47
 Identities = 132/143 (92%)
 Strand = Plus / Plus

                                                                           
Query: 225     atcaactttgctcttggaaatttggaaggcaggggtgatccagctgccacagttgcactg 284
               |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 1651828 atcaactttgctcttggaaatttggaaggctggggtgatccaactgccacagttgcactg 1651887

                                                                           
Query: 285     gatccctgaccagttgaagtaccctaagcgtgctccgcagtggatacaagacagcttccc 344
               ||| |||||||||||||| || ||||  |||||||||||||||||||| || ||||||||
Sbjct: 1651888 gattcctgaccagttgaaatatcctagccgtgctccgcagtggatacacgatagcttccc 1651947

                                      
Query: 345     ctccaaagcgccatcttctactg 367
               ||||||||| |||||||| ||||
Sbjct: 1651948 ctccaaagcaccatcttccactg 1651970



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 92/112 (82%)
 Strand = Plus / Plus

                                                                           
Query: 436     cctttcctcttgtcgtgccactcaaagctagagttgccctcaccaggagtgtgaccgata 495
               ||||| |||||||  ||||||| ||||| ||| |  ||||||||||||||||| |  | |
Sbjct: 1652223 ccttttctcttgttttgccactgaaagcaagattcaccctcaccaggagtgtggctcaca 1652282

                                                                   
Query: 496     acattgtcctgtgctgcgacaatcctcctgcatttcttgcagcggtatgctg 547
               |||||| ||||  | || | ||| ||||||||||| ||||||||||||||||
Sbjct: 1652283 acattgccctgcacagcaataattctcctgcattttttgcagcggtatgctg 1652334



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                        
Query: 588     attaggctgtcgagtaaccccaggatcgtcttcaaatacatggttccctattttctc 644
               ||||||||||| || ||  |||||||| ||||||||||||| | | |||||||||||
Sbjct: 1652375 attaggctgtccagaaagaccaggatcatcttcaaatacatagcttcctattttctc 1652431



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                  
Query: 365     ctggagtcatccacttgagaggctcgacatacagagaggaacaatcttgtt 415
               |||||||||||||||| |||||||| ||| |||  || || ||||||||||
Sbjct: 1652152 ctggagtcatccacttcagaggctcaacaaacaacgatgagcaatcttgtt 1652202
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>emb|BX000508.1|CNS08CDY Oryza sativa chromosome 12, . BAC OJ1575_G05 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 91883

 Score =  196 bits (99), Expect = 6e-47
 Identities = 132/143 (92%)
 Strand = Plus / Minus

                                                                         
Query: 225   atcaactttgctcttggaaatttggaaggcaggggtgatccagctgccacagttgcactg 284
             |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 41076 atcaactttgctcttggaaatttggaaggctggggtgatccaactgccacagttgcactg 41017

                                                                         
Query: 285   gatccctgaccagttgaagtaccctaagcgtgctccgcagtggatacaagacagcttccc 344
             ||| |||||||||||||| || ||||  |||||||||||||||||||| || ||||||||
Sbjct: 41016 gattcctgaccagttgaaatatcctagccgtgctccgcagtggatacacgatagcttccc 40957

                                    
Query: 345   ctccaaagcgccatcttctactg 367
             ||||||||| |||||||| ||||
Sbjct: 40956 ctccaaagcaccatcttccactg 40934



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 92/112 (82%)
 Strand = Plus / Minus

                                                                         
Query: 436   cctttcctcttgtcgtgccactcaaagctagagttgccctcaccaggagtgtgaccgata 495
             ||||| |||||||  ||||||| ||||| ||| |  ||||||||||||||||| |  | |
Sbjct: 40681 ccttttctcttgttttgccactgaaagcaagattcaccctcaccaggagtgtggctcaca 40622

                                                                 
Query: 496   acattgtcctgtgctgcgacaatcctcctgcatttcttgcagcggtatgctg 547
             |||||| ||||  | || | ||| ||||||||||| ||||||||||||||||
Sbjct: 40621 acattgccctgcacagcaataattctcctgcattttttgcagcggtatgctg 40570



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                      
Query: 588   attaggctgtcgagtaaccccaggatcgtcttcaaatacatggttccctattttctc 644
             ||||||||||| || ||  |||||||| ||||||||||||| | | |||||||||||
Sbjct: 40529 attaggctgtccagaaagaccaggatcatcttcaaatacatagcttcctattttctc 40473



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                                
Query: 365   ctggagtcatccacttgagaggctcgacatacagagaggaacaatcttgtt 415
             |||||||||||||||| |||||||| ||| |||  || || ||||||||||
Sbjct: 40752 ctggagtcatccacttcagaggctcaacaaacaacgatgagcaatcttgtt 40702
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>dbj|AK106395.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-F06, full
            insert sequence
          Length = 1346

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 83/100 (83%)
 Strand = Plus / Minus

                                                                        
Query: 451  tgccactcaaagctagagttgccctcaccaggagtgtgaccgataacattgtcctgtgct 510
            ||||||| ||||| ||| |  |||||||||||||| || |  | ||||||| ||||  | 
Sbjct: 1090 tgccactgaaagcaagattcaccctcaccaggagtatggctcacaacattgccctgcaca 1031

                                                    
Query: 511  gcgacaatcctcctgcatttcttgcagcggtatgctgttt 550
            || ||||| ||||||||||| |||||||||||||||||||
Sbjct: 1030 gcaacaattctcctgcattttttgcagcggtatgctgttt 991



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                    
Query: 588 attaggctgtcgagtaaccccaggatcgtcttcaaatacatggttccctattttctc 644
           ||||||||||| || ||  |||||||| ||||||||||||| | | |||||||||||
Sbjct: 953 attaggctgtccagaaagaccaggatcatcttcaaatacatagcttcctattttctc 897



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 365  ctggagtcatccacttgagaggctcgacatacagagaggaacaatcttgtt 415
            |||||||||||||||| |||||||| ||| |||  || || ||||||||||
Sbjct: 1176 ctggagtcatccacttcagaggctcaacaaacaacgatgagcaatcttgtt 1126
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>gb|AC158220.4| Mus musculus chromosome 7, clone RP23-278M8, complete sequence
          Length = 189304

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 267    gctgccacagttgcactggat 287
              |||||||||||||||||||||
Sbjct: 145247 gctgccacagttgcactggat 145227
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>emb|AL590346.1|ATT2K12 Arabidopsis thaliana DNA chromosome 5, BAC clone T2K12 (ESSA project)
          Length = 82896

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 407   aatcttgttgttccttgttgtgtgtgtgg 435
             |||||||||||||||| |||| |||||||
Sbjct: 79191 aatcttgttgttcctttttgtttgtgtgg 79219
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>emb|AL391712.1|ATT5E8 Arabidopsis thaliana DNA chromosome 5, BAC clone T5E8 (ESSA project)
          Length = 103534

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 407   aatcttgttgttccttgttgtgtgtgtgg 435
             |||||||||||||||| |||| |||||||
Sbjct: 18521 aatcttgttgttcctttttgtttgtgtgg 18549
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>gb|AC124821.5| Mus musculus chromosome 1, clone RP24-211L16, complete sequence
          Length = 185212

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 427   tgtgtgtggcctttcctctt 446
             ||||||||||||||||||||
Sbjct: 87542 tgtgtgtggcctttcctctt 87561
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>gb|AC155248.2| Mus musculus BAC clone RP24-243O10 from chromosome 13, complete
            sequence
          Length = 181818

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 56   tgtaagctgttgtatttcag 75
            ||||||||||||||||||||
Sbjct: 3975 tgtaagctgttgtatttcag 3956
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>gb|AC146037.1| Pan troglodytes BAC clone RP43-44A5 from 7, complete sequence
          Length = 177637

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 271   ccacagttgcactggatccc 290
             ||||||||||||||||||||
Sbjct: 47839 ccacagttgcactggatccc 47858
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>gb|AC138591.10| Mus musculus chromosome 3, clone RP24-224A19, complete sequence
          Length = 147525

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 232   ttgctcttggaaatttggaaggca 255
             ||||||||||||| ||||||||||
Sbjct: 74785 ttgctcttggaaagttggaaggca 74808
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>emb|AL441885.9| Human DNA sequence from clone RP11-267L15 on chromosome 10 Contains the
             5' end of a novel gene, complete sequence
          Length = 97352

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 425   tgtgtgtgtggcctttcctc 444
             ||||||||||||||||||||
Sbjct: 84535 tgtgtgtgtggcctttcctc 84554
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>emb|Y14816.1|SAY14816 Staphylococcus aureus DNA for ORF231, ORF141, ORF470, ORF283, ORF242,
            ORF215, ORF259
          Length = 8240

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 34   tatgatgtgttaaaacttct 53
            ||||||||||||||||||||
Sbjct: 5315 tatgatgtgttaaaacttct 5296
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>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 34      tatgatgtgttaaaacttct 53
               ||||||||||||||||||||
Sbjct: 1817612 tatgatgtgttaaaacttct 1817631
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>gb|AF483216.1| Mus musculus minor histocompatibility antigen H13 isoform 1 (H13) gene,
             partial cds
          Length = 28847

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   tccagcttttgatccttgtg 124
             ||||||||||||||||||||
Sbjct: 10575 tccagcttttgatccttgtg 10556
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>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 34      tatgatgtgttaaaacttct 53
               ||||||||||||||||||||
Sbjct: 1878525 tatgatgtgttaaaacttct 1878544
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>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 34      tatgatgtgttaaaacttct 53
               ||||||||||||||||||||
Sbjct: 1846886 tatgatgtgttaaaacttct 1846905
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>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 34      tatgatgtgttaaaacttct 53
               ||||||||||||||||||||
Sbjct: 1772927 tatgatgtgttaaaacttct 1772946
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>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 34      tatgatgtgttaaaacttct 53
               ||||||||||||||||||||
Sbjct: 1869367 tatgatgtgttaaaacttct 1869386
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>dbj|AK038080.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A130076P16 product:unclassifiable, full
            insert sequence
          Length = 2624

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 56   tgtaagctgttgtatttcag 75
            ||||||||||||||||||||
Sbjct: 2248 tgtaagctgttgtatttcag 2267
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>gb|AC149286.4| Pan troglodytes BAC clone CH251-514L10 from chromosome 7, complete
              sequence
          Length = 180713

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 271    ccacagttgcactggatccc 290
              ||||||||||||||||||||
Sbjct: 178065 ccacagttgcactggatccc 178046
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>gb|AC154535.2| Mus musculus BAC clone RP23-447M9 from chromosome 13, complete sequence
          Length = 179176

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    tgtaagctgttgtatttcag 75
             ||||||||||||||||||||
Sbjct: 10827 tgtaagctgttgtatttcag 10846
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>gb|AC137517.6| Homo sapiens 3 BAC RP11-671N3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 105622

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 244   atttggaaggcaggggtgat 263
             ||||||||||||||||||||
Sbjct: 69257 atttggaaggcaggggtgat 69276
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>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 34      tatgatgtgttaaaacttct 53
               ||||||||||||||||||||
Sbjct: 1838277 tatgatgtgttaaaacttct 1838296
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>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 34      tatgatgtgttaaaacttct 53
               ||||||||||||||||||||
Sbjct: 1800611 tatgatgtgttaaaacttct 1800630
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>gb|AC004492.1|AC004492 Homo sapiens BAC clone CTA-363E19 from 7q31.1, complete sequence
          Length = 165608

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 271    ccacagttgcactggatccc 290
              ||||||||||||||||||||
Sbjct: 107930 ccacagttgcactggatccc 107911
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>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome
          Length = 2902619

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 34      tatgatgtgttaaaacttct 53
               ||||||||||||||||||||
Sbjct: 1916200 tatgatgtgttaaaacttct 1916219
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>gb|AF049237.1|AF049237 Bombyx mori antibacterial peptide enbocin (Enbocin) gene, complete
            cds
          Length = 6793

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 50   ttctattgtaagctgttgta 69
            ||||||||||||||||||||
Sbjct: 6217 ttctattgtaagctgttgta 6236
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>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 34      tatgatgtgttaaaacttct 53
               ||||||||||||||||||||
Sbjct: 1748070 tatgatgtgttaaaacttct 1748089


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,403,989
Number of Sequences: 3902068
Number of extensions: 5403989
Number of successful extensions: 90813
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90517
Number of HSP's gapped (non-prelim): 288
length of query: 644
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 621
effective length of database: 17,143,297,704
effective search space: 10645987874184
effective search space used: 10645987874184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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