ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101026.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
2dbj|AK058804.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
3ref|NM_191169.1| Oryza sativa (japonica cultivar-group), predic... 70 8e-09
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 70 8e-09
5dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic D... 70 8e-09
6dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic D... 70 8e-09
7gb|AC132349.3| Mus musculus BAC clone RP24-82B7 from chromosome ... 42 1.9
8gb|AF181496.1| Lycopersicon esculentum meiotic serine proteinase... 42 1.9
9gb|U80583.1|LEU80583 Lycopersicon esculentum proteinase TMP gene... 42 1.9
10gb|AC166836.3| Mus musculus BAC clone RP23-17O23 from chromosome... 40 7.5
11ref|XM_389364.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 40 7.5
12emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g... 40 7.5
13emb|CR619042.1| full-length cDNA clone CS0DF028YK11 of Fetal bra... 40 7.5
14emb|AL121750.22|HSJ323A24 Human DNA sequence from clone RP3-323A... 40 7.5
15gb|AC009260.13| Homo sapiens 12 BAC RP11-435A10 (Roswell Park Ca... 40 7.5
16dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, co... 40 7.5
17gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete... 40 7.5
18gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co... 40 7.5
19gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl... 40 7.5
20gb|AC135862.4| Mus musculus BAC clone RP23-323B2 from chromosome... 40 7.5
21dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com... 40 7.5
22dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic... 40 7.5
23ref|XM_315682.2| Anopheles gambiae str. PEST ENSANGP00000021730 ... 40 7.5
24gb|AY104486.1| Zea mays PCO109435 mRNA sequence 40 7.5
25emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA2... 40 7.5
26emb|Z68279.1|HSL247F6 Human DNA sequence from clone LA04NC01-247... 40 7.5
27emb|AJ938182.1| Staphylococcus aureus RF122 complete genome 40 7.5
28ref|NM_003023.2| Homo sapiens SH3-domain binding protein 2 (SH3B... 40 7.5
29dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 7.5
30dbj|AB000462.1| Homo sapiens mRNA for SH3 binding protein, compl... 40 7.5 
>dbj|AK101026.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150E15, full
            insert sequence
          Length = 3313

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 116/141 (82%)
 Strand = Plus / Minus

                                                                        
Query: 359  tggctgcccgttcttcgtcaggaaaaacctggtcagtcttgatggacccttctgcgttcg 418
            |||||||||||||||||| || || || ||||| | |||||||||  | || |||| |||
Sbjct: 3010 tggctgcccgttcttcgtgagaaagaatctggttattcttgatggcgctttatgcgctcg 2951

                                                                        
Query: 419  atctgctgctggttctgaagcgctgccgatagaatactcagtttcgcctaccgagcaacc 478
             ||||||| || ||||||||| |   |   ||||||||||||||| || || ||||||||
Sbjct: 2950 ttctgctgatgtttctgaagcaccagcaggagaatactcagtttcccccactgagcaacc 2891

                                 
Query: 479  atcgtcggatgcattatcttc 499
            |||||| ||||||||||||||
Sbjct: 2890 atcgtcagatgcattatcttc 2870
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>dbj|AK058804.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-B07, full
           insert sequence
          Length = 1284

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 116/141 (82%)
 Strand = Plus / Minus

                                                                       
Query: 359 tggctgcccgttcttcgtcaggaaaaacctggtcagtcttgatggacccttctgcgttcg 418
           |||||||||||||||||| || || || ||||| | |||||||||  | || |||| |||
Sbjct: 981 tggctgcccgttcttcgtgagaaagaatctggttattcttgatggcgctttatgcgctcg 922

                                                                       
Query: 419 atctgctgctggttctgaagcgctgccgatagaatactcagtttcgcctaccgagcaacc 478
            ||||||| || ||||||||| |   |   ||||||||||||||| || || ||||||||
Sbjct: 921 ttctgctgatgtttctgaagcaccagcaggagaatactcagtttcccccactgagcaacc 862

                                
Query: 479 atcgtcggatgcattatcttc 499
           |||||| ||||||||||||||
Sbjct: 861 atcgtcagatgcattatcttc 841
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>ref|NM_191169.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2433

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                               
Query: 449  agaatactcagtttcgcctaccgagcaaccatcgtcggatgcattatcttc 499
            ||||||||||||||| || || |||||||||||||| ||||||||||||||
Sbjct: 2289 agaatactcagtttcccccactgagcaaccatcgtcagatgcattatcttc 2239
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                                   
Query: 449      agaatactcagtttcgcctaccgagcaaccatcgtcggatgcattatcttc 499
                ||||||||||||||| || || |||||||||||||| ||||||||||||||
Sbjct: 31098934 agaatactcagtttcccccactgagcaaccatcgtcagatgcattatcttc 31098884



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                             
Query: 359      tggctgcccgttcttcgtcaggaaaaacctggtcagtcttgatgg 403
                |||||||||||||||||| || || || ||||| | |||||||||
Sbjct: 31099615 tggctgcccgttcttcgtgagaaagaatctggttattcttgatgg 31099571
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>dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0439E07
          Length = 176486

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                                 
Query: 449    agaatactcagtttcgcctaccgagcaaccatcgtcggatgcattatcttc 499
              ||||||||||||||| || || |||||||||||||| ||||||||||||||
Sbjct: 155913 agaatactcagtttcccccactgagcaaccatcgtcagatgcattatcttc 155863



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                           
Query: 359    tggctgcccgttcttcgtcaggaaaaacctggtcagtcttgatgg 403
              |||||||||||||||||| || || || ||||| | |||||||||
Sbjct: 156594 tggctgcccgttcttcgtgagaaagaatctggttattcttgatgg 156550
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>dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0014K08
          Length = 177263

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                                
Query: 449   agaatactcagtttcgcctaccgagcaaccatcgtcggatgcattatcttc 499
             ||||||||||||||| || || |||||||||||||| ||||||||||||||
Sbjct: 25279 agaatactcagtttcccccactgagcaaccatcgtcagatgcattatcttc 25229



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 359   tggctgcccgttcttcgtcaggaaaaacctggtcagtcttgatgg 403
             |||||||||||||||||| || || || ||||| | |||||||||
Sbjct: 25960 tggctgcccgttcttcgtgagaaagaatctggttattcttgatgg 25916
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>gb|AC132349.3| Mus musculus BAC clone RP24-82B7 from chromosome 16, complete sequence
          Length = 216783

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 345    ggcctggaagcagctggctgc 365
              |||||||||||||||||||||
Sbjct: 102456 ggcctggaagcagctggctgc 102476
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>gb|AF181496.1| Lycopersicon esculentum meiotic serine proteinase (TMP) mRNA,
            complete cds
          Length = 2430

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 520  caatggaccctgatattagtt 540
            |||||||||||||||||||||
Sbjct: 1376 caatggaccctgatattagtt 1396
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>gb|U80583.1|LEU80583 Lycopersicon esculentum proteinase TMP gene, complete cds
          Length = 5337

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 520  caatggaccctgatattagtt 540
            |||||||||||||||||||||
Sbjct: 3295 caatggaccctgatattagtt 3315
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>gb|AC166836.3| Mus musculus BAC clone RP23-17O23 from chromosome 10, complete sequence
          Length = 202804

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 160   caagacaaaaactatccaagcctc 183
             ||||||||||||| ||||||||||
Sbjct: 31013 caagacaaaaactctccaagcctc 31036
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>ref|XM_389364.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09188.1)
           partial mRNA
          Length = 1119

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 536 tagttggttctgttggcttg 555
           ||||||||||||||||||||
Sbjct: 556 tagttggttctgttggcttg 537
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>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 480     tcgtcggatgcattatcttc 499
               ||||||||||||||||||||
Sbjct: 2496165 tcgtcggatgcattatcttc 2496146
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>emb|CR619042.1| full-length cDNA clone CS0DF028YK11 of Fetal brain of Homo sapiens
           (human)
          Length = 1844

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 347 cctggaagcagctggctgcc 366
           ||||||||||||||||||||
Sbjct: 224 cctggaagcagctggctgcc 205
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>emb|AL121750.22|HSJ323A24 Human DNA sequence from clone RP3-323A24 on chromosome 4, complete
             sequence
          Length = 149969

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 347   cctggaagcagctggctgcc 366
             ||||||||||||||||||||
Sbjct: 61621 cctggaagcagctggctgcc 61640
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>gb|AC009260.13| Homo sapiens 12 BAC RP11-435A10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 99727

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 271   cggtcggggcctggctggct 290
             ||||||||||||||||||||
Sbjct: 96424 cggtcggggcctggctggct 96405
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>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 480     tcgtcggatgcattatcttc 499
               ||||||||||||||||||||
Sbjct: 2574728 tcgtcggatgcattatcttc 2574709
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>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 480     tcgtcggatgcattatcttc 499
               ||||||||||||||||||||
Sbjct: 2504110 tcgtcggatgcattatcttc 2504091
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>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 480     tcgtcggatgcattatcttc 499
               ||||||||||||||||||||
Sbjct: 2514775 tcgtcggatgcattatcttc 2514756
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>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 480     tcgtcggatgcattatcttc 499
               ||||||||||||||||||||
Sbjct: 2567671 tcgtcggatgcattatcttc 2567652
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>gb|AC135862.4| Mus musculus BAC clone RP23-323B2 from chromosome 10, complete sequence
          Length = 203324

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 160    caagacaaaaactatccaagcctc 183
              ||||||||||||| ||||||||||
Sbjct: 203093 caagacaaaaactctccaagcctc 203116
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>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 480     tcgtcggatgcattatcttc 499
               ||||||||||||||||||||
Sbjct: 2516997 tcgtcggatgcattatcttc 2516978
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>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 480     tcgtcggatgcattatcttc 499
               ||||||||||||||||||||
Sbjct: 2503534 tcgtcggatgcattatcttc 2503515
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>ref|XM_315682.2| Anopheles gambiae str. PEST ENSANGP00000021730
           (ENSANGG00000019241), partial mRNA
          Length = 585

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 206 gcagcagcccctcgtcgtcc 225
           ||||||||||||||||||||
Sbjct: 314 gcagcagcccctcgtcgtcc 333
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>gb|AY104486.1| Zea mays PCO109435 mRNA sequence
          Length = 992

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 248 cgggggcttgatcgaagatg 267
           ||||||||||||||||||||
Sbjct: 62  cgggggcttgatcgaagatg 81
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>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome
          Length = 2902619

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 480     tcgtcggatgcattatcttc 499
               ||||||||||||||||||||
Sbjct: 2608704 tcgtcggatgcattatcttc 2608685
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>emb|Z68279.1|HSL247F6 Human DNA sequence from clone LA04NC01-247F6 on chromosome 4,
            complete sequence
          Length = 22970

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 347  cctggaagcagctggctgcc 366
            ||||||||||||||||||||
Sbjct: 3540 cctggaagcagctggctgcc 3559
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>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 480     tcgtcggatgcattatcttc 499
               ||||||||||||||||||||
Sbjct: 2456157 tcgtcggatgcattatcttc 2456138
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>ref|NM_003023.2| Homo sapiens SH3-domain binding protein 2 (SH3BP2), mRNA
          Length = 7300

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 347  cctggaagcagctggctgcc 366
            ||||||||||||||||||||
Sbjct: 3493 cctggaagcagctggctgcc 3474
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 423     gctgctggttctgaagcgct 442
               ||||||||||||||||||||
Sbjct: 3375313 gctgctggttctgaagcgct 3375294
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>dbj|AB000462.1| Homo sapiens mRNA for SH3 binding protein, complete cds,
            clone:RES4-23A
          Length = 7300

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 347  cctggaagcagctggctgcc 366
            ||||||||||||||||||||
Sbjct: 3493 cctggaagcagctggctgcc 3474


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,273,511
Number of Sequences: 3902068
Number of extensions: 3273511
Number of successful extensions: 56817
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56692
Number of HSP's gapped (non-prelim): 125
length of query: 555
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 532
effective length of database: 17,143,297,704
effective search space: 9120234378528
effective search space used: 9120234378528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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