ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR734254.2|CNS0GTBX Tetraodon nigroviridis full-length cDNA 38 2.3
2emb|CR723721.2|CNS0GLDB Tetraodon nigroviridis full-length cDNA 38 2.3
3emb|CR701018.2|CNS0G3UU Tetraodon nigroviridis full-length cDNA 38 2.3
4emb|CR697486.2|CNS0G14Q Tetraodon nigroviridis full-length cDNA 38 2.3
5emb|CR685407.2|CNS0FRT7 Tetraodon nigroviridis full-length cDNA 38 2.3
6gb|AF199154.1|AF199154 Oedipina parvipes MVZ 210404 cytochrome b... 38 2.3
7emb|AL611986.15| Mouse DNA sequence from clone RP23-74I9 on chro... 38 2.3
8gb|BC077566.1| Xenopus laevis tubulin, gamma complex associated ... 36 9.3
9gb|AC117594.8| Mus musculus chromosome 3, clone RP23-335D16, com... 36 9.3
10emb|AL589947.3| Human DNA sequence from clone RP11-127B16 on chr... 36 9.3
11gb|AC012099.4|AC012099 Homo sapiens chromosome 14 clone RP11-45G... 36 9.3
12gb|AC132438.3| Mus musculus BAC clone RP23-234G15 from 3, comple... 36 9.3

>emb|CR734254.2|CNS0GTBX Tetraodon nigroviridis full-length cDNA
          Length = 741

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 1   tcccaacggggaggaacgc 19
           |||||||||||||||||||
Sbjct: 256 tcccaacggggaggaacgc 274



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>emb|CR723721.2|CNS0GLDB Tetraodon nigroviridis full-length cDNA
          Length = 743

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 1   tcccaacggggaggaacgc 19
           |||||||||||||||||||
Sbjct: 256 tcccaacggggaggaacgc 274



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>emb|CR701018.2|CNS0G3UU Tetraodon nigroviridis full-length cDNA
          Length = 1016

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 1   tcccaacggggaggaacgc 19
           |||||||||||||||||||
Sbjct: 531 tcccaacggggaggaacgc 549



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>emb|CR697486.2|CNS0G14Q Tetraodon nigroviridis full-length cDNA
          Length = 1015

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 1   tcccaacggggaggaacgc 19
           |||||||||||||||||||
Sbjct: 530 tcccaacggggaggaacgc 548



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>emb|CR685407.2|CNS0FRT7 Tetraodon nigroviridis full-length cDNA
          Length = 877

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 1   tcccaacggggaggaacgc 19
           |||||||||||||||||||
Sbjct: 393 tcccaacggggaggaacgc 411



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>gb|AF199154.1|AF199154 Oedipina parvipes MVZ 210404 cytochrome b gene, partial cds;
          mitochondrial gene for mitochondrial product
          Length = 385

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                 
Query: 41 gggagatctacagaggaattatt 63
          |||||||||||| ||||||||||
Sbjct: 48 gggagatctacaaaggaattatt 26



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>emb|AL611986.15| Mouse DNA sequence from clone RP23-74I9 on chromosome 15, complete
              sequence
          Length = 191808

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 40     agggagatctacagaggaa 58
              |||||||||||||||||||
Sbjct: 113695 agggagatctacagaggaa 113713



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>gb|BC077566.1| Xenopus laevis tubulin, gamma complex associated protein 2, mRNA
            (cDNA clone MGC:83533 IMAGE:5078639), complete cds
          Length = 1833

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 45   gatctacagaggaattat 62
            ||||||||||||||||||
Sbjct: 1297 gatctacagaggaattat 1314



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>gb|AC117594.8| Mus musculus chromosome 3, clone RP23-335D16, complete sequence
          Length = 230457

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 46     atctacagaggaattatt 63
              ||||||||||||||||||
Sbjct: 184313 atctacagaggaattatt 184330



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>emb|AL589947.3| Human DNA sequence from clone RP11-127B16 on chromosome 6 Contaims a
             novel gene and a CpG island, complete sequence
          Length = 143715

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 46    atctacagaggaattatt 63
             ||||||||||||||||||
Sbjct: 28458 atctacagaggaattatt 28475



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>gb|AC012099.4|AC012099 Homo sapiens chromosome 14 clone RP11-45G3 containing neurexin III
             gene, partial cds, complete sequence
          Length = 157871

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 46    atctacagaggaattatt 63
             ||||||||||||||||||
Sbjct: 54604 atctacagaggaattatt 54621



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>gb|AC132438.3| Mus musculus BAC clone RP23-234G15 from 3, complete sequence
          Length = 180660

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 46     atctacagaggaattatt 63
              ||||||||||||||||||
Sbjct: 174968 atctacagaggaattatt 174951


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 245,210
Number of Sequences: 3902068
Number of extensions: 245210
Number of successful extensions: 15031
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15018
Number of HSP's gapped (non-prelim): 13
length of query: 63
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 42
effective length of database: 17,151,101,840
effective search space: 720346277280
effective search space used: 720346277280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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