ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6k18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y5258_ARATH (Q9FK81) Protein At5g22580 37 0.015
2POP3_ARATH (Q9LUV2) Putative Pop3 protein 30 1.1
3GLPF_MYCGE (P47279) Probable glycerol uptake facilitator protein 28 6.8
4ADFP_MOUSE (P43883) Adipophilin (Adipose differentiation-related... 28 6.8
5AROK_CHLMU (Q9PK27) Shikimate kinase (EC 2.7.1.71) (SK) 27 8.9
6SYD_THEAC (Q9HJM1) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... 27 8.9

>Y5258_ARATH (Q9FK81) Protein At5g22580|
          Length = 111

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -2

Query: 390 ACMGHEKHSAFAATFMAVLDKVVVLDFPFVVAK 292
           A   H  H  F+A F AV+DK+V+LDFP    K
Sbjct: 72  AFTSHPLHVEFSAAFTAVIDKIVLLDFPVAAVK 104



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>POP3_ARATH (Q9LUV2) Putative Pop3 protein|
          Length = 109

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 402 EDLAACMGHEKHSAFAATFMAVLDKVVVLDF 310
           E +A  + H  H  FA  F+  LDKV+V+D+
Sbjct: 72  EAVAEYIAHPAHVEFATIFLGSLDKVLVIDY 102



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>GLPF_MYCGE (P47279) Probable glycerol uptake facilitator protein|
          Length = 258

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +1

Query: 163 GWWLLHEMVGTFQTVV-GDG 219
           GWW L E++GTF  ++ G+G
Sbjct: 10  GWWFLAELIGTFILIIFGNG 29



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>ADFP_MOUSE (P43883) Adipophilin (Adipose differentiation-related protein)|
           (ADRP)
          Length = 425

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 270 QYPTLVSVCYQASKHLRTITNHCLKGA 190
           QYP L SVC  A K ++T+T+  +  A
Sbjct: 39  QYPYLRSVCEMAEKGVKTVTSAAMTSA 65



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>AROK_CHLMU (Q9PK27) Shikimate kinase (EC 2.7.1.71) (SK)|
          Length = 184

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
 Frame = -2

Query: 327 VVVLDFPFVVA------KPAPSA*TQYPTLVSVCYQASKHLRTITNH 205
           +V+LD PF         KP P +    P+L +  +Q  + LR +T H
Sbjct: 105 LVLLDLPFATLYQRLQKKPLPESLKNTPSLENALFQRLEKLRLLTPH 151



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>SYD_THEAC (Q9HJM1) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 428

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 132 IHSCSLQIDRWMVAIT*NGRHLSDSGW*WYVDAYLLGNRQIPGWGTGFKRM 284
           +H   + I R+      N + L    + +YVDA+  G     GWG G +R+
Sbjct: 359 VHDPKMLIQRF------NEKKLDVKSFQFYVDAFKYGMPPHAGWGLGLERL 403


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,137,151
Number of Sequences: 219361
Number of extensions: 847596
Number of successful extensions: 1790
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1790
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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