| Clone Name | rbags6k17 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK070838.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073J07, full insert sequence Length = 1877 Score = 377 bits (190), Expect = e-101 Identities = 345/397 (86%) Strand = Plus / Minus Query: 228 taccatgctcagtcaagctgtaccttgtccaattcagcaatggtttcttcaaactttaaa 287 ||||| |||||||||| |||||| || |||| |||| |||| |||| |||||||||||| Sbjct: 1605 taccaggctcagtcaaactgtactttctccagttcaccaatcatttcctcaaactttaaa 1546 Query: 288 atctgtcttaaaaagtagtccccatggcgcttggtcgacttggactccacgacatgaata 347 |||||||| |||||||| || |||||||||||| | | |||||||||| |||||||||| Sbjct: 1545 atctgtctcaaaaagtaatcaccatggcgcttgattggtttggactccatgacatgaata 1486 Query: 348 acatcctcattaatatagaaatcaaagtctgcactggatacaattttcccattactgtca 407 |||||||| ||||| ||||||||||||||||| ||||| ||||| || |||||| ||||| Sbjct: 1485 acatcctccttaatgtagaaatcaaagtctgcgctggaaacaatctttccattattgtca 1426 Query: 408 actgcatgcattttgtgcttgtacgtcataagaatagacctaagtgttgcctcatccatt 467 ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||| | Sbjct: 1425 actgcatgcattttgtgcttgtacgtcatcaggatagacctaagcgttgcctcatccact 1366 Query: 468 tccatatactgggcaagtttggtaatggtaattgctgagtataactttagatagctccgg 527 |||||||| || |||||||||| ||| || |||| ||| || || ||||||||||| | | Sbjct: 1365 tccatatattgcgcaagtttggcaatagttattgttgaatacaattttagatagcttctg 1306 Query: 528 ataccanaaaggagctgttgctgcttcacttcataaaggaacagcttcaactgaagccga 587 || || |||| | |||||| |||||||||||||||||||||| |||||| ||||| || Sbjct: 1305 atccctgaaagcaactgttgttgcttcacttcataaaggaacaacttcaattgaaggcgg 1246 Query: 588 taggcgtcctggttataatttgtaagtggctggtcca 624 || || |||||||||||||||||||||||||| |||| Sbjct: 1245 tatgcatcctggttataatttgtaagtggctgatcca 1209
>gb|BT018666.1| Zea mays clone EL01N0510C04.d mRNA sequence Length = 1646 Score = 297 bits (150), Expect = 2e-77 Identities = 329/389 (84%) Strand = Plus / Minus Query: 236 tcagtcaagctgtaccttgtccaattcagcaatggtttcttcaaactttaaaatctgtct 295 |||||||||||||||||| |||| |||| |||| |||| |||||||| ||||| ||||| Sbjct: 1575 tcagtcaagctgtaccttctccagttcaccaatcatttcctcaaacttcaaaatttgtct 1516 Query: 296 taaaaagtagtccccatggcgcttggtcgacttggactccacgacatgaataacatcctc 355 |||||||| || ||||| |||||||| | ||||||||||| |||||||| |||||||| Sbjct: 1515 caaaaagtaatcaccatgacgcttggtaggtttggactccacaacatgaatcacatcctc 1456 Query: 356 attaatatagaaatcaaagtctgcactggatacaattttcccattactgtcaactgcatg 415 || ||||| |||||||||||||| ||||| || || || | ||||||||||||||| Sbjct: 1455 gacgatgtagaagtcaaagtctgcacttgatactatctttccttcactgtcaactgcatg 1396 Query: 416 cattttgtgcttgtacgtcataagaatagacctaagtgttgcctcatccatttccatata 475 ||||||||||||||| ||||| || || ||||| |||||||| ||||||| ||||||||| Sbjct: 1395 cattttgtgcttgtatgtcatcaggatcgaccttagtgttgcttcatccacttccatata 1336 Query: 476 ctgggcaagtttggtaatggtaattgctgagtataactttagatagctccggataccana 535 |||||||||||| ||||||| |||| ||| |||| ||| ||||| ||||| || ||| | Sbjct: 1335 ttgggcaagtttgctaatggttattgttgaatatagcttcagataactccgaatcccaga 1276 Query: 536 aaggagctgttgctgcttcacttcataaaggaacagcttcaactgaagccgataggcgtc 595 ||| | |||||||||||| |||||||| || |||| |||||||||||| || || || || Sbjct: 1275 aagcaactgttgctgctttacttcatagagaaacaacttcaactgaagacggtatgcatc 1216 Query: 596 ctggttataatttgtaagtggctggtcca 624 ||||||||| ||||| || |||||||||| Sbjct: 1215 ctggttatagtttgttagcggctggtcca 1187
>gb|AY104376.1| Zea mays PCO082841 mRNA sequence Length = 1869 Score = 297 bits (150), Expect = 2e-77 Identities = 329/389 (84%) Strand = Plus / Minus Query: 236 tcagtcaagctgtaccttgtccaattcagcaatggtttcttcaaactttaaaatctgtct 295 |||||||||||||||||| |||| |||| |||| |||| |||||||| ||||| ||||| Sbjct: 1665 tcagtcaagctgtaccttctccagttcaccaatcatttcctcaaacttcaaaatttgtct 1606 Query: 296 taaaaagtagtccccatggcgcttggtcgacttggactccacgacatgaataacatcctc 355 |||||||| || ||||| |||||||| | ||||||||||| |||||||| |||||||| Sbjct: 1605 caaaaagtaatcaccatgacgcttggtaggtttggactccacaacatgaatcacatcctc 1546 Query: 356 attaatatagaaatcaaagtctgcactggatacaattttcccattactgtcaactgcatg 415 || ||||| |||||||||||||| ||||| || || || | ||||||||||||||| Sbjct: 1545 gacgatgtagaagtcaaagtctgcacttgatactatctttccttcactgtcaactgcatg 1486 Query: 416 cattttgtgcttgtacgtcataagaatagacctaagtgttgcctcatccatttccatata 475 ||||||||||||||| ||||| || || ||||| |||||||| ||||||| ||||||||| Sbjct: 1485 cattttgtgcttgtatgtcatcaggatcgaccttagtgttgcttcatccacttccatata 1426 Query: 476 ctgggcaagtttggtaatggtaattgctgagtataactttagatagctccggataccana 535 |||||||||||| ||||||| |||| ||| |||| ||| ||||| ||||| || ||| | Sbjct: 1425 ttgggcaagtttgctaatggttattgttgaatatagcttcagataactccgaatcccaga 1366 Query: 536 aaggagctgttgctgcttcacttcataaaggaacagcttcaactgaagccgataggcgtc 595 ||| | |||||||||||| |||||||| || |||| |||||||||||| || || || || Sbjct: 1365 aagcaactgttgctgctttacttcatagagaaacaacttcaactgaagacggtatgcatc 1306 Query: 596 ctggttataatttgtaagtggctggtcca 624 ||||||||| ||||| || |||||||||| Sbjct: 1305 ctggttatagtttgttagcggctggtcca 1277
>dbj|AK104688.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-F08, full insert sequence Length = 1242 Score = 174 bits (88), Expect = 2e-40 Identities = 273/335 (81%) Strand = Plus / Minus Query: 276 tcaaactttaaaatctgtcttaaaaagtagtccccatggcgcttggtcgacttggactcc 335 |||||||| ||||||||||| |||||||| || |||||| |||||| ||||||| || Sbjct: 985 tcaaacttcaaaatctgtctcaaaaagtaatcaccatggttcttggttaacttggattca 926 Query: 336 acgacatgaataacatcctcattaatatagaaatcaaagtctgcactggatacaattttc 395 || |||||||||| ||||||| ||||||||| ||||||||||||||||||| | || Sbjct: 925 acaacatgaataatgtcctcatcaatatagaagtcaaagtctgcactggatatgaccttt 866 Query: 396 ccattactgtcaactgcatgcattttgtgcttgtacgtcataagaatagacctaagtgtt 455 || | |||||| | || |||||||||||||||||| ||||||||||| | ||| ||||| Sbjct: 865 ccgtcactgtcgattgaatgcattttgtgcttgtatgtcataagaattgtccttagtgta 806 Query: 456 gcctcatccatttccatatactgggcaagtttggtaatggtaattgctgagtataacttt 515 ||||||||| ||||| || | ||||||||| ||| || || | ||| || ||||| Sbjct: 805 acctcatccacatccatgtatttggcaagtttaccaattgttatcgttgaatacaacttg 746 Query: 516 agatagctccggataccanaaaggagctgttgctgcttcacttcataaaggaacagcttc 575 |||||||| || |||||| | || | |||||| || |||||||||||||| || || ||| Sbjct: 745 agatagcttcgaataccagagagcaactgttgttgtttcacttcataaagaaatagtttc 686 Query: 576 aactgaagccgataggcgtcctggttataatttgt 610 |||||||| ||||| || |||||||| || ||||| Sbjct: 685 aactgaagacgataagcatcctggttgtagtttgt 651
>dbj|AK068760.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160I02, full insert sequence Length = 1948 Score = 174 bits (88), Expect = 2e-40 Identities = 273/335 (81%) Strand = Plus / Minus Query: 276 tcaaactttaaaatctgtcttaaaaagtagtccccatggcgcttggtcgacttggactcc 335 |||||||| ||||||||||| |||||||| || |||||| |||||| ||||||| || Sbjct: 1553 tcaaacttcaaaatctgtctcaaaaagtaatcaccatggttcttggttaacttggattca 1494 Query: 336 acgacatgaataacatcctcattaatatagaaatcaaagtctgcactggatacaattttc 395 || |||||||||| ||||||| ||||||||| ||||||||||||||||||| | || Sbjct: 1493 acaacatgaataatgtcctcatcaatatagaagtcaaagtctgcactggatatgaccttt 1434 Query: 396 ccattactgtcaactgcatgcattttgtgcttgtacgtcataagaatagacctaagtgtt 455 || | |||||| | || |||||||||||||||||| ||||||||||| | ||| ||||| Sbjct: 1433 ccgtcactgtcgattgaatgcattttgtgcttgtatgtcataagaattgtccttagtgta 1374 Query: 456 gcctcatccatttccatatactgggcaagtttggtaatggtaattgctgagtataacttt 515 ||||||||| ||||| || | ||||||||| ||| || || | ||| || ||||| Sbjct: 1373 acctcatccacatccatgtatttggcaagtttaccaattgttatcgttgaatacaacttg 1314 Query: 516 agatagctccggataccanaaaggagctgttgctgcttcacttcataaaggaacagcttc 575 |||||||| || |||||| | || | |||||| || |||||||||||||| || || ||| Sbjct: 1313 agatagcttcgaataccagagagcaactgttgttgtttcacttcataaagaaatagtttc 1254 Query: 576 aactgaagccgataggcgtcctggttataatttgt 610 |||||||| ||||| || |||||||| || ||||| Sbjct: 1253 aactgaagacgataagcatcctggttgtagtttgt 1219
>dbj|AK067567.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108C14, full insert sequence Length = 1950 Score = 174 bits (88), Expect = 2e-40 Identities = 273/335 (81%) Strand = Plus / Minus Query: 276 tcaaactttaaaatctgtcttaaaaagtagtccccatggcgcttggtcgacttggactcc 335 |||||||| ||||||||||| |||||||| || |||||| |||||| ||||||| || Sbjct: 1598 tcaaacttcaaaatctgtctcaaaaagtaatcaccatggttcttggttaacttggattca 1539 Query: 336 acgacatgaataacatcctcattaatatagaaatcaaagtctgcactggatacaattttc 395 || |||||||||| ||||||| ||||||||| ||||||||||||||||||| | || Sbjct: 1538 acaacatgaataatgtcctcatcaatatagaagtcaaagtctgcactggatatgaccttt 1479 Query: 396 ccattactgtcaactgcatgcattttgtgcttgtacgtcataagaatagacctaagtgtt 455 || | |||||| | || |||||||||||||||||| ||||||||||| | ||| ||||| Sbjct: 1478 ccgtcactgtcgattgaatgcattttgtgcttgtatgtcataagaattgtccttagtgta 1419 Query: 456 gcctcatccatttccatatactgggcaagtttggtaatggtaattgctgagtataacttt 515 ||||||||| ||||| || | ||||||||| ||| || || | ||| || ||||| Sbjct: 1418 acctcatccacatccatgtatttggcaagtttaccaattgttatcgttgaatacaacttg 1359 Query: 516 agatagctccggataccanaaaggagctgttgctgcttcacttcataaaggaacagcttc 575 |||||||| || |||||| | || | |||||| || |||||||||||||| || || ||| Sbjct: 1358 agatagcttcgaataccagagagcaactgttgttgtttcacttcataaagaaatagtttc 1299 Query: 576 aactgaagccgataggcgtcctggttataatttgt 610 |||||||| ||||| || |||||||| || ||||| Sbjct: 1298 aactgaagacgataagcatcctggttgtagtttgt 1264
>ref|NM_188595.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1698 Score = 151 bits (76), Expect = 3e-33 Identities = 153/179 (85%) Strand = Plus / Minus Query: 446 cctaagtgttgcctcatccatttccatatactgggcaagtttggtaatggtaattgctga 505 |||||| ||||||||||||| ||||||||| || |||||||||| ||| || |||| ||| Sbjct: 1356 cctaagcgttgcctcatccacttccatatattgcgcaagtttggcaatagttattgttga 1297 Query: 506 gtataactttagatagctccggataccanaaaggagctgttgctgcttcacttcataaag 565 || || ||||||||||| | ||| || |||| | |||||| ||||||||||||||||| Sbjct: 1296 atacaattttagatagcttctgatccctgaaagcaactgttgttgcttcacttcataaag 1237 Query: 566 gaacagcttcaactgaagccgataggcgtcctggttataatttgtaagtggctggtcca 624 ||||| |||||| ||||| || || || |||||||||||||||||||||||||| |||| Sbjct: 1236 gaacaacttcaattgaaggcggtatgcatcctggttataatttgtaagtggctgatcca 1178 Score = 119 bits (60), Expect = 1e-23 Identities = 84/92 (91%) Strand = Plus / Minus Query: 357 ttaatatagaaatcaaagtctgcactggatacaattttcccattactgtcaactgcatgc 416 ||||| ||||||||||||||||| ||||| ||||| || |||||| |||||||||||||| Sbjct: 1478 ttaatgtagaaatcaaagtctgcgctggaaacaatctttccattattgtcaactgcatgc 1419 Query: 417 attttgtgcttgtacgtcataagaatagacct 448 |||||||||||||||||||| || |||||||| Sbjct: 1418 attttgtgcttgtacgtcatcaggatagacct 1387
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 121 bits (61), Expect = 3e-24 Identities = 88/97 (90%) Strand = Plus / Plus Query: 352 cctcattaatatagaaatcaaagtctgcactggatacaattttcccattactgtcaactg 411 |||| ||||| ||||||||||||||||| ||||| ||||| || |||||| ||||||||| Sbjct: 7125256 cctccttaatgtagaaatcaaagtctgcgctggaaacaatctttccattattgtcaactg 7125315 Query: 412 catgcattttgtgcttgtacgtcataagaatagacct 448 ||||||||||||||||||||||||| || |||||||| Sbjct: 7125316 catgcattttgtgcttgtacgtcatcaggatagacct 7125352 Score = 115 bits (58), Expect = 2e-22 Identities = 120/141 (85%) Strand = Plus / Plus Query: 443 agacctaagtgttgcctcatccatttccatatactgggcaagtttggtaatggtaattgc 502 ||||||||| ||||||||||||| ||||||||| || |||||||||| ||| || |||| Sbjct: 7125420 agacctaagcgttgcctcatccacttccatatattgcgcaagtttggcaatagttattgt 7125479 Query: 503 tgagtataactttagatagctccggataccanaaaggagctgttgctgcttcacttcata 562 ||| || || ||||||||||| | ||| || |||| | |||||| |||||||||||||| Sbjct: 7125480 tgaatacaattttagatagcttctgatccctgaaagcaactgttgttgcttcacttcata 7125539 Query: 563 aaggaacagcttcaactgaag 583 |||||||| |||||| ||||| Sbjct: 7125540 aaggaacaacttcaattgaag 7125560 Score = 83.8 bits (42), Expect = 6e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 281 ctttaaaatctgtcttaaaaagtagtccccatggcgcttggtcgacttggactccacgac 340 ||||||||||||||| |||||||| || |||||||||||| | | |||||||||| ||| Sbjct: 7124854 ctttaaaatctgtctcaaaaagtaatcaccatggcgcttgattggtttggactccatgac 7124913 Query: 341 atgaataacatcct 354 |||||||||||||| Sbjct: 7124914 atgaataacatcct 7124927 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 595 cctggttataatttgtaagtggctggtcca 624 ||||||||||||||||||||||||| |||| Sbjct: 7126125 cctggttataatttgtaagtggctgatcca 7126154
>dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0485D09 Length = 150594 Score = 121 bits (61), Expect = 3e-24 Identities = 88/97 (90%) Strand = Plus / Plus Query: 352 cctcattaatatagaaatcaaagtctgcactggatacaattttcccattactgtcaactg 411 |||| ||||| ||||||||||||||||| ||||| ||||| || |||||| ||||||||| Sbjct: 19904 cctccttaatgtagaaatcaaagtctgcgctggaaacaatctttccattattgtcaactg 19963 Query: 412 catgcattttgtgcttgtacgtcataagaatagacct 448 ||||||||||||||||||||||||| || |||||||| Sbjct: 19964 catgcattttgtgcttgtacgtcatcaggatagacct 20000 Score = 115 bits (58), Expect = 2e-22 Identities = 120/141 (85%) Strand = Plus / Plus Query: 443 agacctaagtgttgcctcatccatttccatatactgggcaagtttggtaatggtaattgc 502 ||||||||| ||||||||||||| ||||||||| || |||||||||| ||| || |||| Sbjct: 20068 agacctaagcgttgcctcatccacttccatatattgcgcaagtttggcaatagttattgt 20127 Query: 503 tgagtataactttagatagctccggataccanaaaggagctgttgctgcttcacttcata 562 ||| || || ||||||||||| | ||| || |||| | |||||| |||||||||||||| Sbjct: 20128 tgaatacaattttagatagcttctgatccctgaaagcaactgttgttgcttcacttcata 20187 Query: 563 aaggaacagcttcaactgaag 583 |||||||| |||||| ||||| Sbjct: 20188 aaggaacaacttcaattgaag 20208 Score = 83.8 bits (42), Expect = 6e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 281 ctttaaaatctgtcttaaaaagtagtccccatggcgcttggtcgacttggactccacgac 340 ||||||||||||||| |||||||| || |||||||||||| | | |||||||||| ||| Sbjct: 19502 ctttaaaatctgtctcaaaaagtaatcaccatggcgcttgattggtttggactccatgac 19561 Query: 341 atgaataacatcct 354 |||||||||||||| Sbjct: 19562 atgaataacatcct 19575 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 595 cctggttataatttgtaagtggctggtcca 624 ||||||||||||||||||||||||| |||| Sbjct: 20773 cctggttataatttgtaagtggctgatcca 20802
>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0452F10 Length = 145120 Score = 121 bits (61), Expect = 3e-24 Identities = 88/97 (90%) Strand = Plus / Plus Query: 352 cctcattaatatagaaatcaaagtctgcactggatacaattttcccattactgtcaactg 411 |||| ||||| ||||||||||||||||| ||||| ||||| || |||||| ||||||||| Sbjct: 112836 cctccttaatgtagaaatcaaagtctgcgctggaaacaatctttccattattgtcaactg 112895 Query: 412 catgcattttgtgcttgtacgtcataagaatagacct 448 ||||||||||||||||||||||||| || |||||||| Sbjct: 112896 catgcattttgtgcttgtacgtcatcaggatagacct 112932 Score = 115 bits (58), Expect = 2e-22 Identities = 120/141 (85%) Strand = Plus / Plus Query: 443 agacctaagtgttgcctcatccatttccatatactgggcaagtttggtaatggtaattgc 502 ||||||||| ||||||||||||| ||||||||| || |||||||||| ||| || |||| Sbjct: 113000 agacctaagcgttgcctcatccacttccatatattgcgcaagtttggcaatagttattgt 113059 Query: 503 tgagtataactttagatagctccggataccanaaaggagctgttgctgcttcacttcata 562 ||| || || ||||||||||| | ||| || |||| | |||||| |||||||||||||| Sbjct: 113060 tgaatacaattttagatagcttctgatccctgaaagcaactgttgttgcttcacttcata 113119 Query: 563 aaggaacagcttcaactgaag 583 |||||||| |||||| ||||| Sbjct: 113120 aaggaacaacttcaattgaag 113140 Score = 83.8 bits (42), Expect = 6e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 281 ctttaaaatctgtcttaaaaagtagtccccatggcgcttggtcgacttggactccacgac 340 ||||||||||||||| |||||||| || |||||||||||| | | |||||||||| ||| Sbjct: 112434 ctttaaaatctgtctcaaaaagtaatcaccatggcgcttgattggtttggactccatgac 112493 Query: 341 atgaataacatcct 354 |||||||||||||| Sbjct: 112494 atgaataacatcct 112507 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 595 cctggttataatttgtaagtggctggtcca 624 ||||||||||||||||||||||||| |||| Sbjct: 113705 cctggttataatttgtaagtggctgatcca 113734
>gb|BT017334.1| Zea mays clone EL01N0321B01.c mRNA sequence Length = 320 Score = 113 bits (57), Expect = 7e-22 Identities = 129/153 (84%) Strand = Plus / Minus Query: 236 tcagtcaagctgtaccttgtccaattcagcaatggtttcttcaaactttaaaatctgtct 295 |||||||||||||||||| |||| |||| |||| |||| |||||||| ||||| ||||| Sbjct: 178 tcagtcaagctgtaccttctccagttcaccaatcatttcctcaaacttcaaaatttgtct 119 Query: 296 taaaaagtagtccccatggcgcttggtcgacttggactccacgacatgaataacatcctc 355 |||||||| || ||||| |||||||| | ||||||||||| |||||||| |||||||| Sbjct: 118 caaaaagtaatcaccatgacgcttggtaggtttggactccacaacatgaatcacatcctc 59 Query: 356 attaatatagaaatcaaagtctgcactggatac 388 || ||||| |||||||||||||| ||||| Sbjct: 58 gacgatgtagaagtcaaagtctgcacttgatac 26
>gb|AC104275.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_C10, complete sequence Length = 138209 Score = 77.8 bits (39), Expect = 4e-11 Identities = 78/91 (85%) Strand = Plus / Plus Query: 352 cctcattaatatagaaatcaaagtctgcactggatacaattttcccattactgtcaactg 411 |||||| ||||||||| ||||||||||||||||||| | || || | |||||| | || Sbjct: 99750 cctcatcaatatagaagtcaaagtctgcactggatatgacctttccgtcactgtcgattg 99809 Query: 412 catgcattttgtgcttgtacgtcataagaat 442 |||||||||||||||||| ||||||||||| Sbjct: 99810 aatgcattttgtgcttgtatgtcataagaat 99840 Score = 60.0 bits (30), Expect = 9e-06 Identities = 74/89 (83%) Strand = Plus / Plus Query: 510 aactttagatagctccggataccanaaaggagctgttgctgcttcacttcataaaggaac 569 ||||| |||||||| || |||||| | || | |||||| || |||||||||||||| || Sbjct: 99991 aacttgagatagcttcgaataccagagagcaactgttgttgtttcacttcataaagaaat 100050 Query: 570 agcttcaactgaagccgataggcgtcctg 598 || ||||||||||| ||||| || ||||| Sbjct: 100051 agtttcaactgaagacgataagcatcctg 100079 Score = 48.1 bits (24), Expect = 0.035 Identities = 54/64 (84%) Strand = Plus / Plus Query: 285 aaaatctgtcttaaaaagtagtccccatggcgcttggtcgacttggactccacgacatga 344 ||||||||||| |||||||| || |||||| |||||| ||||||| || || |||||| Sbjct: 98668 aaaatctgtctcaaaaagtaatcaccatggttcttggttaacttggattcaacaacatga 98727 Query: 345 ataa 348 |||| Sbjct: 98728 ataa 98731
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 77.8 bits (39), Expect = 4e-11 Identities = 78/91 (85%) Strand = Plus / Plus Query: 352 cctcattaatatagaaatcaaagtctgcactggatacaattttcccattactgtcaactg 411 |||||| ||||||||| ||||||||||||||||||| | || || | |||||| | || Sbjct: 7663355 cctcatcaatatagaagtcaaagtctgcactggatatgacctttccgtcactgtcgattg 7663414 Query: 412 catgcattttgtgcttgtacgtcataagaat 442 |||||||||||||||||| ||||||||||| Sbjct: 7663415 aatgcattttgtgcttgtatgtcataagaat 7663445 Score = 60.0 bits (30), Expect = 9e-06 Identities = 74/89 (83%) Strand = Plus / Plus Query: 510 aactttagatagctccggataccanaaaggagctgttgctgcttcacttcataaaggaac 569 ||||| |||||||| || |||||| | || | |||||| || |||||||||||||| || Sbjct: 7663596 aacttgagatagcttcgaataccagagagcaactgttgttgtttcacttcataaagaaat 7663655 Query: 570 agcttcaactgaagccgataggcgtcctg 598 || ||||||||||| ||||| || ||||| Sbjct: 7663656 agtttcaactgaagacgataagcatcctg 7663684 Score = 48.1 bits (24), Expect = 0.035 Identities = 54/64 (84%) Strand = Plus / Plus Query: 285 aaaatctgtcttaaaaagtagtccccatggcgcttggtcgacttggactccacgacatga 344 ||||||||||| |||||||| || |||||| |||||| ||||||| || || |||||| Sbjct: 7662273 aaaatctgtctcaaaaagtaatcaccatggttcttggttaacttggattcaacaacatga 7662332 Query: 345 ataa 348 |||| Sbjct: 7662333 ataa 7662336
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 447 ctaagtgttgcctcatccattt 468 |||||||||||||||||||||| Sbjct: 2721786 ctaagtgttgcctcatccattt 2721765
>gb|AC118607.12| Mus musculus chromosome 14, clone RP23-479D1, complete sequence Length = 218552 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 568 acagcttcaactgaagccgat 588 ||||||||||||||||||||| Sbjct: 1992 acagcttcaactgaagccgat 2012
>emb|Z69380.1|SPAC4H3 S.pombe chromosome I cosmid c4H3 Length = 34635 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 459 tcatccatttccatatactgg 479 ||||||||||||||||||||| Sbjct: 20711 tcatccatttccatatactgg 20691
>emb|AL049543.17|HS1186N24 Human DNA sequence from clone RP5-1186N24 on chromosome 6p21.2-22.2. Contains part of a novel zinc finger protein gene, the GPX5 gene for glutathione peroxidase 5 (epididymal androgen-related protein), the 5' end of a glutathion peroxidase pseudogene, ESTs, STSs, GSSs and a CpG island, complete sequence Length = 95594 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 282 tttaaaatctgtcttaaaaagtagt 306 |||||||| |||||||||||||||| Sbjct: 87604 tttaaaatttgtcttaaaaagtagt 87580
>gb|AC005678.1|AC005678 Homo sapiens PAC clone RP11-569I24 from 7, complete sequence Length = 187543 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 282 tttaaaatctgtcttaaaaagtagt 306 |||||||| |||||||||||||||| Sbjct: 181707 tttaaaatttgtcttaaaaagtagt 181731
>gb|AC161764.4| Mus musculus BAC clone RP23-193D1 from chromosome 14, complete sequence Length = 215230 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 568 acagcttcaactgaagccgat 588 ||||||||||||||||||||| Sbjct: 158889 acagcttcaactgaagccgat 158909
>gb|AC107752.8| Mus musculus chromosome 10, clone RP23-244J13, complete sequence Length = 208458 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 tcatcaaatagcaaacagga 58 |||||||||||||||||||| Sbjct: 180288 tcatcaaatagcaaacagga 180307
>gb|AY441319.1| Armigeres subalbatus ASAP ID: 40791 questionable: mitochondrial small ribosomal subunit S5 mRNA sequence Length = 540 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 ggagctgttgctgcttcact 557 |||||||||||||||||||| Sbjct: 514 ggagctgttgctgcttcact 495
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 tgtttctctcctcgatgatc 225 |||||||||||||||||||| Sbjct: 658599 tgtttctctcctcgatgatc 658580
>gb|AC186170.1| Ornithorhynchus anatinus chromosome UNK clone OABb-12B13, complete sequence Length = 134720 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 475 actgggcaagtttggtaatggtaattgctgag 506 |||||||| || |||||||||||| ||||||| Sbjct: 44537 actgggcaggtgtggtaatggtaactgctgag 44568
>gb|DQ481669.1| Takifugu rubripes HoxDb gene cluster, complete sequence Length = 398525 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 tttcttcaaactttaaaatc 290 |||||||||||||||||||| Sbjct: 25363 tttcttcaaactttaaaatc 25344
>gb|AC146272.3| Pan troglodytes BAC clone RP43-29H6 from 7, complete sequence Length = 149408 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 605 atttgtaagtggctggtcca 624 |||||||||||||||||||| Sbjct: 115667 atttgtaagtggctggtcca 115648
>gb|AC116478.14| Mus musculus chromosome 8, clone RP23-396E23, complete sequence Length = 193468 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 caggataatacagtgaattg 88 |||||||||||||||||||| Sbjct: 144561 caggataatacagtgaattg 144542
>gb|AC132597.3| Mus musculus BAC clone RP24-180D17 from chromosome 5, complete sequence Length = 162871 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 tgcatgcattttgtgcttgt 429 |||||||||||||||||||| Sbjct: 35874 tgcatgcattttgtgcttgt 35893
>gb|AC142352.1| Pan troglodytes BAC clone RP43-21K18 from 7, complete sequence Length = 171165 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 605 atttgtaagtggctggtcca 624 |||||||||||||||||||| Sbjct: 138102 atttgtaagtggctggtcca 138083
>gb|AC156993.3| Mus musculus chromosome 8, clone RP23-79L16, complete sequence Length = 145880 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 caggataatacagtgaattg 88 |||||||||||||||||||| Sbjct: 92854 caggataatacagtgaattg 92873
>gb|AC159098.6| Mus musculus chromosome 8, clone RP24-391C9, complete sequence Length = 184137 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 caggataatacagtgaattg 88 |||||||||||||||||||| Sbjct: 1854 caggataatacagtgaattg 1873
>gb|AC116363.2| Homo sapiens chromosome 5 clone RP11-758E17, complete sequence Length = 194619 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 ttcttcaaactttaaaatct 291 |||||||||||||||||||| Sbjct: 80314 ttcttcaaactttaaaatct 80295
>gb|AC092288.3| Homo sapiens chromosome 5 clone CTD-2293K3, complete sequence Length = 93844 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 ttcttcaaactttaaaatct 291 |||||||||||||||||||| Sbjct: 16057 ttcttcaaactttaaaatct 16038
>gb|AC109494.3| Homo sapiens chromosome 5 clone RP11-783J1, complete sequence Length = 172180 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 ttcttcaaactttaaaatct 291 |||||||||||||||||||| Sbjct: 39966 ttcttcaaactttaaaatct 39985
>gb|AC087069.3| Homo sapiens chromosome 7 clone RP11-7P19, complete sequence Length = 159620 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 605 atttgtaagtggctggtcca 624 |||||||||||||||||||| Sbjct: 116334 atttgtaagtggctggtcca 116315
>gb|AC113036.8| Mus musculus chromosome 13, clone RP23-223B10, complete sequence Length = 190133 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 tttaaaatctgtcttaaaaa 301 |||||||||||||||||||| Sbjct: 61231 tttaaaatctgtcttaaaaa 61212 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,322,825 Number of Sequences: 3902068 Number of extensions: 5322825 Number of successful extensions: 109095 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108884 Number of HSP's gapped (non-prelim): 200 length of query: 624 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 601 effective length of database: 17,143,297,704 effective search space: 10303121920104 effective search space used: 10303121920104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)