ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6k16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HUTU_BACAN (Q81Y46) Urocanate hydratase (EC 4.2.1.49) (Urocanase... 32 1.8
2CAT8_YEAST (P39113) Regulatory protein CAT8 30 6.9
3ANR12_HUMAN (Q6UB98) Ankyrin repeat domain-containing protein 12... 29 9.0
4XDH_HUMAN (P47989) Xanthine dehydrogenase/oxidase [Includes: Xan... 29 9.0

>HUTU_BACAN (Q81Y46) Urocanate hydratase (EC 4.2.1.49) (Urocanase)|
           (Imidazolonepropionate hydrolase)
          Length = 552

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +3

Query: 93  RVCILITVNLDQSLATQGR*WDQKKEKKKTELLGDSCQLMVKDVSPTMTPHLFPPQNCT- 269
           R C + T +L+++LA     + +KKE     LLG++ +++ + V   +TP L   Q    
Sbjct: 206 RYCDMYTESLEEALAVANE-YKEKKEPISIGLLGNAAEILPELVKRNITPDLVTDQTSAH 264

Query: 270 -PLDVHASLSY 299
            PL+ +  + Y
Sbjct: 265 DPLNGYIPVGY 275



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>CAT8_YEAST (P39113) Regulatory protein CAT8|
          Length = 1433

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 45  NXLPQLRQFLXTIYTFRVCILITVNLDQSLATQGR*WDQKKEKK 176
           N L   R  L  +Y F++ +  TVNLD+  AT  R  + K +KK
Sbjct: 686 NALDNWRNQLPEMYYFQITVNGTVNLDEIRATNQRNTETKFDKK 729



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>ANR12_HUMAN (Q6UB98) Ankyrin repeat domain-containing protein 12 (Ankyrin|
            repeat-containing cofactor 2) (GAC-1 protein)
          Length = 2062

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +3

Query: 174  KKTELLGDSCQLMVKDVSPTMTPHLFPPQNCT---PLDVHASLSYV--QDP 311
            ++TEL G+SC        P   P  FP Q+ +    +  H SLSYV  Q+P
Sbjct: 1469 RQTELPGNSCAQDPASFMPPQQPCSFPSQSLSDAESISKHMSLSYVANQEP 1519



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>XDH_HUMAN (P47989) Xanthine dehydrogenase/oxidase [Includes: Xanthine|
           dehydrogenase (EC 1.17.1.4) (XD); Xanthine oxidase (EC
           1.17.3.2) (XO) (Xanthine oxidoreductase)]
          Length = 1332

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 22/63 (34%), Positives = 28/63 (44%)
 Frame = +3

Query: 201 CQLMVKDVSPTMTPHLFPPQNCTPLDVHASLSYVQDPHHPSAL*TVLVTSNKTNLGXNRQ 380
           C    KD S +++P LF P+  TPLD        Q+P  P  L  +  T  K       Q
Sbjct: 179 CMNQKKDHSVSLSPSLFKPEEFTPLDP------TQEPIFPPELLRLKDTPRK-------Q 225

Query: 381 LRF 389
           LRF
Sbjct: 226 LRF 228


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,456,840
Number of Sequences: 219361
Number of extensions: 1463200
Number of successful extensions: 3209
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3209
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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