ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6k16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY105376.1| Zea mays PCO091943 mRNA sequence 143 8e-31
2ref|XM_469518.1| Oryza sativa (japonica cultivar-group), mRNA 123 7e-25
3dbj|AK106515.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 7e-25
4dbj|AK106520.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 3e-24
5dbj|AK122108.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 1e-20
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 80 9e-12
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 80 9e-12
8gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033... 80 9e-12
9gb|AC117460.7| Homo sapiens 3 BAC RP11-343D2 (Roswell Park Cance... 42 2.0
10emb|AL928677.6| Zebrafish DNA sequence from clone BUSM1-70B1 in ... 42 2.0
11emb|AL583917.1|MLEPRTN1 Mycobacterium leprae strain TN complete ... 42 2.0
12emb|AL035500.1|MLCL373 Mycobacterium leprae cosmid L373 42 2.0
13dbj|AB023033.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 2.0
14ref|NM_195541.1| Oryza sativa (japonica cultivar-group) hypothet... 40 8.1
15gb|BC068038.1| Danio rerio zgc:77713, mRNA (cDNA clone MGC:77713... 40 8.1
16gb|AC125082.3| Mus musculus BAC clone RP24-90M24 from chromosome... 40 8.1
17ref|XM_388733.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 8.1
18gb|AC107792.10| Mus musculus chromosome 17, clone RP23-83F8, com... 40 8.1
19gb|AC124445.4| Mus musculus BAC clone RP24-191B18 from chromosom... 40 8.1
20emb|CR759875.6| Zebrafish DNA sequence from clone DKEY-274K22 in... 40 8.1
21emb|CR405706.7| Zebrafish DNA sequence from clone CH211-233D12 i... 40 8.1
22emb|BX936325.9| Zebrafish DNA sequence from clone CH211-74P16 in... 40 8.1
23gb|AC120497.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 8.1
24gb|AC113339.1| Genomic sequence for Oryza sativa (japonica culti... 40 8.1
25ref|XM_681381.1| PREDICTED: Danio rerio similar to putative prot... 40 8.1
26dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
27ref|NM_205602.2| Danio rerio zgc:77713 (zgc:77713), mRNA 40 8.1
28gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.1
29emb|AL844559.14| Zebrafish DNA sequence from clone DKEY-14K1, co... 40 8.1 
>gb|AY105376.1| Zea mays PCO091943 mRNA sequence
          Length = 1560

 Score =  143 bits (72), Expect = 8e-31
 Identities = 159/187 (85%), Gaps = 3/187 (1%)
 Strand = Plus / Minus

                                                                       
Query: 409 tccttcaatcctttcgtcagcagatcatagttgatggatgcaagttgtgaaanattnttg 468
           |||||||||||||| || |||| |||||| |||||||| ||||||||||| | ||| |||
Sbjct: 901 tccttcaatcctttggtgagcatatcataattgatggaagcaagttgtgatagattcttg 842

                                                                       
Query: 469 aacganaagttgctgaaagagtaattgacatttgggccanattcaaagtcagtggggcca 528
           ||||| |||||||||||||| |||||||||||||  | | ||||||| ||| || |||||
Sbjct: 841 aacgagaagttgctgaaagaataattgacatttgcactagattcaaactcattgaggcca 782

                                                                       
Query: 529 cctccatgctcatcccccatgtcatcttggtgattgctcacgcaactactgctgccacta 588
             ||  || || |||||||||||||||||| | |||||||| ||||||||||| ||||||
Sbjct: 781 --tcgctg-tcctcccccatgtcatcttggcggttgctcacacaactactgcttccacta 725

                  
Query: 589 tggcttc 595
            ||||||
Sbjct: 724 aggcttc 718



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 90   ttcagggtttgtattctgattacagtaa 117
            ||||||| ||||||||||| ||||||||
Sbjct: 1260 ttcaggggttgtattctgaatacagtaa 1233
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>ref|XM_469518.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4752

 Score =  123 bits (62), Expect = 7e-25
 Identities = 171/208 (82%), Gaps = 3/208 (1%)
 Strand = Plus / Minus

                                                                        
Query: 388  tcaggtttcattggaggctcgtccttcaatcctttcgtcagcagatcatagttgatggat 447
            |||| |||| |||| || || |||||||||||||| || |||| ||| || ||||| || 
Sbjct: 3818 tcagatttcgttggtggatcatccttcaatcctttggtgagcaaatcgtaattgatagag 3759

                                                                        
Query: 448  gcaagttgtgaaanattnttgaacganaagttgctgaaagagtaattgacatttgggcca 507
             |||||||||| | ||| ||||| || || ||||||||||| || |||||||||| || |
Sbjct: 3758 acaagttgtgatagattcttgaatgagaaattgctgaaagaatagttgacatttgagcta 3699

                                                                        
Query: 508  nattcaaagtcagtggggccacctccatgctcatcccccatgtcatcttggtgattgctc 567
             ||||||| ||||||  |||||    |  |||||||||||| ||||||||||||||||||
Sbjct: 3698 gattcaaactcagtgaagccact---agactcatcccccatatcatcttggtgattgctc 3642

                                        
Query: 568  acgcaactactgctgccactatggcttc 595
            || || ||||||||||||||| ||||||
Sbjct: 3641 acacagctactgctgccactaaggcttc 3614



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 60/65 (92%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                        
Query: 289  cactttcatatgtacaagatccacaccacccgagcgccttgtaaactgttttggttactt 348
            ||||||||||||||||||||| ||||||| ||||| ||||||||| || |||||||||||
Sbjct: 3916 cactttcatatgtacaagatctacaccacgcgagcaccttgtaaattg-tttggttactt 3858

                 
Query: 349  caaat 353
            |||||
Sbjct: 3857 caaat 3853



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                    
Query: 185  gctcctaggtgactcatgccaacttatggtcaaggatgtttcaccgacgatgacac 240
            ||||||||||||| ||| ||||||||||||||||||||||||| ||| ||||||||
Sbjct: 4061 gctcctaggtgacgcattccaacttatggtcaaggatgtttcatcgatgatgacac 4006
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>dbj|AK106515.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-A10, full
            insert sequence
          Length = 3151

 Score =  123 bits (62), Expect = 7e-25
 Identities = 171/208 (82%), Gaps = 3/208 (1%)
 Strand = Plus / Minus

                                                                        
Query: 388  tcaggtttcattggaggctcgtccttcaatcctttcgtcagcagatcatagttgatggat 447
            |||| |||| |||| || || |||||||||||||| || |||| ||| || ||||| || 
Sbjct: 2383 tcagatttcgttggtggatcatccttcaatcctttggtgagcaaatcgtaattgatagag 2324

                                                                        
Query: 448  gcaagttgtgaaanattnttgaacganaagttgctgaaagagtaattgacatttgggcca 507
             |||||||||| | ||| ||||| || || ||||||||||| || |||||||||| || |
Sbjct: 2323 acaagttgtgatagattcttgaatgagaaattgctgaaagaatagttgacatttgagcta 2264

                                                                        
Query: 508  nattcaaagtcagtggggccacctccatgctcatcccccatgtcatcttggtgattgctc 567
             ||||||| ||||||  |||||    |  |||||||||||| ||||||||||||||||||
Sbjct: 2263 gattcaaactcagtgaagccact---agactcatcccccatatcatcttggtgattgctc 2207

                                        
Query: 568  acgcaactactgctgccactatggcttc 595
            || || ||||||||||||||| ||||||
Sbjct: 2206 acacagctactgctgccactaaggcttc 2179



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 60/65 (92%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                        
Query: 289  cactttcatatgtacaagatccacaccacccgagcgccttgtaaactgttttggttactt 348
            ||||||||||||||||||||| ||||||| ||||| ||||||||| || |||||||||||
Sbjct: 2481 cactttcatatgtacaagatctacaccacgcgagcaccttgtaaattg-tttggttactt 2423

                 
Query: 349  caaat 353
            |||||
Sbjct: 2422 caaat 2418



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                    
Query: 185  gctcctaggtgactcatgccaacttatggtcaaggatgtttcaccgacgatgacac 240
            ||||||||||||| ||| ||||||||||||||||||||||||| ||| ||||||||
Sbjct: 2626 gctcctaggtgacgcattccaacttatggtcaaggatgtttcatcgatgatgacac 2571
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>dbj|AK106520.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-C10, full
            insert sequence
          Length = 2732

 Score =  121 bits (61), Expect = 3e-24
 Identities = 155/187 (82%), Gaps = 3/187 (1%)
 Strand = Plus / Minus

                                                                        
Query: 409  tccttcaatcctttcgtcagcagatcatagttgatggatgcaagttgtgaaanattnttg 468
            |||||||||||||| || |||| ||| || ||||| ||  |||||||||| | ||| |||
Sbjct: 2208 tccttcaatcctttggtgagcaaatcgtaattgatagagacaagttgtgatagattcttg 2149

                                                                        
Query: 469  aacganaagttgctgaaagagtaattgacatttgggccanattcaaagtcagtggggcca 528
            || || || ||||||||||| || |||||||||| || | ||||||| ||||||  ||||
Sbjct: 2148 aatgagaaattgctgaaagaatagttgacatttgagctagattcaaactcagtgaagcca 2089

                                                                        
Query: 529  cctccatgctcatcccccatgtcatcttggtgattgctcacgcaactactgctgccacta 588
            |    |  |||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct: 2088 ct---agactcatcccccatatcatcttggtgattgctcacacagctactgctgccacta 2032

                   
Query: 589  tggcttc 595
             ||||||
Sbjct: 2031 aggcttc 2025



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 60/65 (92%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                        
Query: 289  cactttcatatgtacaagatccacaccacccgagcgccttgtaaactgttttggttactt 348
            ||||||||||||||||||||| ||||||| ||||| ||||||||| || |||||||||||
Sbjct: 2327 cactttcatatgtacaagatctacaccacgcgagcaccttgtaaattg-tttggttactt 2269

                 
Query: 349  caaat 353
            |||||
Sbjct: 2268 caaat 2264



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                    
Query: 185  gctcctaggtgactcatgccaacttatggtcaaggatgtttcaccgacgatgacac 240
            ||||||||||||| | | ||||||||||||||||||||||||| ||| ||||||||
Sbjct: 2472 gctcctaggtgacgccttccaacttatggtcaaggatgtttcatcgatgatgacac 2417
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>dbj|AK122108.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033126F17, full
            insert sequence
          Length = 4613

 Score =  109 bits (55), Expect = 1e-20
 Identities = 170/208 (81%), Gaps = 5/208 (2%)
 Strand = Plus / Minus

                                                                        
Query: 388  tcaggtttcattggaggctcgtccttcaatcctttcgtcagcagatcatagttgatggat 447
            |||| |||| |||| || || |||||||||||||| || |||| ||| || ||||| || 
Sbjct: 3845 tcagatttcgttggtggatcatccttcaatcctttggtgagcaaatcgtaattgatagag 3786

                                                                        
Query: 448  gcaagttgtgaaanattnttgaacganaagttgctgaaagagtaattgacatttgggcca 507
             |||||||||| | ||| ||||  || || ||||||||||| || |||||||||| || |
Sbjct: 3785 acaagttgtgatagattcttga--gagaaattgctgaaagaatagttgacatttgagcta 3728

                                                                        
Query: 508  nattcaaagtcagtggggccacctccatgctcatcccccatgtcatcttggtgattgctc 567
             ||||||| ||||||  |||||    |  |||||||||||| ||||||||||||||||||
Sbjct: 3727 gattcaaactcagtgaagccact---agactcatcccccatatcatcttggtgattgctc 3671

                                        
Query: 568  acgcaactactgctgccactatggcttc 595
            || || ||||||||||||||| ||||||
Sbjct: 3670 acacagctactgctgccactaaggcttc 3643



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 60/65 (92%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                        
Query: 289  cactttcatatgtacaagatccacaccacccgagcgccttgtaaactgttttggttactt 348
            ||||||||||||||||||||| ||||||| ||||| ||||||||| || |||||||||||
Sbjct: 3943 cactttcatatgtacaagatctacaccacgcgagcaccttgtaaattg-tttggttactt 3885

                 
Query: 349  caaat 353
            |||||
Sbjct: 3884 caaat 3880



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                    
Query: 185  gctcctaggtgactcatgccaacttatggtcaaggatgtttcaccgacgatgacac 240
            ||||||||||||| ||| ||||||||||||||||||||||||| ||| ||||||||
Sbjct: 4088 gctcctaggtgacgcattccaacttatggtcaaggatgtttcatcgatgatgacac 4033
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                        
Query: 185      gctcctaggtgactcatgccaacttatggtcaaggatgtttcaccgacgatgacac 240
                ||||||||||||| ||| ||||||||||||||||||||||||| ||| ||||||||
Sbjct: 28455811 gctcctaggtgacgcattccaacttatggtcaaggatgtttcatcgatgatgacac 28455866



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                                   
Query: 545      ccatgtcatcttggtgattgctcacgcaactactgctgccactatggcttc 595
                |||| |||||||||||||||||||| || ||||||||||||||| ||||||
Sbjct: 28457316 ccatatcatcttggtgattgctcacacagctactgctgccactaaggcttc 28457366



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 51/56 (91%), Gaps = 1/56 (1%)
 Strand = Plus / Plus

                                                                        
Query: 298      atgtacaagatccacaccacccgagcgccttgtaaactgttttggttacttcaaat 353
                |||||||||||| ||||||| ||||| ||||||||| || ||||||||||||||||
Sbjct: 28456056 atgtacaagatctacaccacgcgagcaccttgtaaattg-tttggttacttcaaat 28456110



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                         
Query: 466      ttgaacganaagttgctgaaagagtaattgacatttgggccanattcaaagtcagtg 522
                ||||| || || ||||||||||| || |||||||||| || | ||||||| ||||||
Sbjct: 28457128 ttgaatgagaaattgctgaaagaatagttgacatttgagctagattcaaactcagtg 28457184
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                        
Query: 185      gctcctaggtgactcatgccaacttatggtcaaggatgtttcaccgacgatgacac 240
                ||||||||||||| ||| ||||||||||||||||||||||||| ||| ||||||||
Sbjct: 28547135 gctcctaggtgacgcattccaacttatggtcaaggatgtttcatcgatgatgacac 28547190



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                                   
Query: 545      ccatgtcatcttggtgattgctcacgcaactactgctgccactatggcttc 595
                |||| |||||||||||||||||||| || ||||||||||||||| ||||||
Sbjct: 28548640 ccatatcatcttggtgattgctcacacagctactgctgccactaaggcttc 28548690



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 51/56 (91%), Gaps = 1/56 (1%)
 Strand = Plus / Plus

                                                                        
Query: 298      atgtacaagatccacaccacccgagcgccttgtaaactgttttggttacttcaaat 353
                |||||||||||| ||||||| ||||| ||||||||| || ||||||||||||||||
Sbjct: 28547380 atgtacaagatctacaccacgcgagcaccttgtaaattg-tttggttacttcaaat 28547434



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                         
Query: 466      ttgaacganaagttgctgaaagagtaattgacatttgggccanattcaaagtcagtg 522
                ||||| || || ||||||||||| || |||||||||| || | ||||||| ||||||
Sbjct: 28548452 ttgaatgagaaattgctgaaagaatagttgacatttgagctagattcaaactcagtg 28548508
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>gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence, complete
             sequence
          Length = 143681

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                     
Query: 185   gctcctaggtgactcatgccaacttatggtcaaggatgtttcaccgacgatgacac 240
             ||||||||||||| ||| ||||||||||||||||||||||||| ||| ||||||||
Sbjct: 49941 gctcctaggtgacgcattccaacttatggtcaaggatgtttcatcgatgatgacac 49996



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                                
Query: 545   ccatgtcatcttggtgattgctcacgcaactactgctgccactatggcttc 595
             |||| |||||||||||||||||||| || ||||||||||||||| ||||||
Sbjct: 51446 ccatatcatcttggtgattgctcacacagctactgctgccactaaggcttc 51496



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 51/56 (91%), Gaps = 1/56 (1%)
 Strand = Plus / Plus

                                                                     
Query: 298   atgtacaagatccacaccacccgagcgccttgtaaactgttttggttacttcaaat 353
             |||||||||||| ||||||| ||||| ||||||||| || ||||||||||||||||
Sbjct: 50186 atgtacaagatctacaccacgcgagcaccttgtaaattg-tttggttacttcaaat 50240



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                      
Query: 466   ttgaacganaagttgctgaaagagtaattgacatttgggccanattcaaagtcagtg 522
             ||||| || || ||||||||||| || |||||||||| || | ||||||| ||||||
Sbjct: 51258 ttgaatgagaaattgctgaaagaatagttgacatttgagctagattcaaactcagtg 51314
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>gb|AC117460.7| Homo sapiens 3 BAC RP11-343D2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 183595

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 335    tgttttggttacttcaaataa 355
              |||||||||||||||||||||
Sbjct: 139947 tgttttggttacttcaaataa 139927
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>emb|AL928677.6| Zebrafish DNA sequence from clone BUSM1-70B1 in linkage group 7
             Contains a novel gene similar to mouse and rodent CHRNA7
             (cholinergic receptor, nicotinic, alpha polypeptide 7), a
             novel gene and two CpG islands, complete sequence
          Length = 144076

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 345   acttcaaataaaacaaacctc 365
             |||||||||||||||||||||
Sbjct: 12955 acttcaaataaaacaaacctc 12935
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>emb|AL583917.1|MLEPRTN1 Mycobacterium leprae strain TN complete genome; segment 1/10
          Length = 344050

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 307    atccacaccacccgagcgcct 327
              |||||||||||||||||||||
Sbjct: 216707 atccacaccacccgagcgcct 216727
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>emb|AL035500.1|MLCL373 Mycobacterium leprae cosmid L373
          Length = 37304

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 307 atccacaccacccgagcgcct 327
           |||||||||||||||||||||
Sbjct: 854 atccacaccacccgagcgcct 874
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>dbj|AB023033.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K6M13
          Length = 77129

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 559   tgattgctcacgcaactactgctgccact 587
             ||||||| || ||||||||||||||||||
Sbjct: 58198 tgattgcgcaagcaactactgctgccact 58170
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>ref|NM_195541.1| Oryza sativa (japonica cultivar-group) hypothetical protein
            (OSJNBb0047B19.4), mRNA
          Length = 2148

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 224  ttcaccgacgatgacaccac 243
            ||||||||||||||||||||
Sbjct: 1307 ttcaccgacgatgacaccac 1288
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>gb|BC068038.1| Danio rerio zgc:77713, mRNA (cDNA clone MGC:77713 IMAGE:7000543),
            complete cds
          Length = 1926

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 337  ttttggttacttcaaataaa 356
            ||||||||||||||||||||
Sbjct: 1849 ttttggttacttcaaataaa 1868
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>gb|AC125082.3| Mus musculus BAC clone RP24-90M24 from chromosome 10, complete sequence
          Length = 226256

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 187    tcctaggtgactcatgccaa 206
              ||||||||||||||||||||
Sbjct: 203564 tcctaggtgactcatgccaa 203583
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>ref|XM_388733.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG08557.1)
            partial mRNA
          Length = 4374

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 551  catcttggtgattgctcacg 570
            ||||||||||||||||||||
Sbjct: 2670 catcttggtgattgctcacg 2689
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>gb|AC107792.10| Mus musculus chromosome 17, clone RP23-83F8, complete sequence
          Length = 253013

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 477   gttgctgaaagagtaattgacatt 500
             |||||||||||||| |||||||||
Sbjct: 92308 gttgctgaaagagtgattgacatt 92285
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>gb|AC124445.4| Mus musculus BAC clone RP24-191B18 from chromosome 10, complete sequence
          Length = 190295

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 187    tcctaggtgactcatgccaa 206
              ||||||||||||||||||||
Sbjct: 133820 tcctaggtgactcatgccaa 133801
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>emb|CR759875.6| Zebrafish DNA sequence from clone DKEY-274K22 in linkage group 1,
             complete sequence
          Length = 216255

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 337   ttttggttacttcaaataaa 356
             ||||||||||||||||||||
Sbjct: 64644 ttttggttacttcaaataaa 64625
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>emb|CR405706.7| Zebrafish DNA sequence from clone CH211-233D12 in linkage group 1,
              complete sequence
          Length = 181249

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 337    ttttggttacttcaaataaa 356
              ||||||||||||||||||||
Sbjct: 155368 ttttggttacttcaaataaa 155349
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>emb|BX936325.9| Zebrafish DNA sequence from clone CH211-74P16 in linkage group 1,
             complete sequence
          Length = 185075

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 337   ttttggttacttcaaataaa 356
             ||||||||||||||||||||
Sbjct: 95847 ttttggttacttcaaataaa 95866
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>gb|AC120497.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNAa0082N11, from chromosome 10, complete sequence
          Length = 127525

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   ttcaccgacgatgacaccac 243
             ||||||||||||||||||||
Sbjct: 86594 ttcaccgacgatgacaccac 86613
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>gb|AC113339.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare clone OSJNBb0047B19, from chromosome 10,
             complete sequence
          Length = 137015

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   ttcaccgacgatgacaccac 243
             ||||||||||||||||||||
Sbjct: 19069 ttcaccgacgatgacaccac 19088
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>ref|XM_681381.1| PREDICTED: Danio rerio similar to putative protein of bilaterial
            origin (11.2 kD) (3E558) (LOC558192), mRNA
          Length = 1915

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 337  ttttggttacttcaaataaa 356
            ||||||||||||||||||||
Sbjct: 1885 ttttggttacttcaaataaa 1904
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 224     ttcaccgacgatgacaccac 243
               ||||||||||||||||||||
Sbjct: 7576075 ttcaccgacgatgacaccac 7576094
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>ref|NM_205602.2| Danio rerio zgc:77713 (zgc:77713), mRNA
          Length = 1926

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 337  ttttggttacttcaaataaa 356
            ||||||||||||||||||||
Sbjct: 1849 ttttggttacttcaaataaa 1868
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 224     ttcaccgacgatgacaccac 243
               ||||||||||||||||||||
Sbjct: 7580274 ttcaccgacgatgacaccac 7580293
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>emb|AL844559.14| Zebrafish DNA sequence from clone DKEY-14K1, complete sequence
          Length = 216608

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 337    ttttggttacttcaaataaa 356
              ||||||||||||||||||||
Sbjct: 144422 ttttggttacttcaaataaa 144441


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,320,203
Number of Sequences: 3902068
Number of extensions: 4320203
Number of successful extensions: 104204
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104029
Number of HSP's gapped (non-prelim): 167
length of query: 595
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 572
effective length of database: 17,143,297,704
effective search space: 9805966286688
effective search space used: 9805966286688
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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