Clone Information

BLAST Search Result

Clone Name	rbags6k13
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	NAM8_YEAST (Q00539) Protein NAM8	70	5e-12
2	YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c i...	65	2e-10
3	NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA...	59	1e-08
4	CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1	58	3e-08
5	YBKC_SCHPO (O94621) Hypothetical RNA-binding protein C1289.12 in...	39	0.021
6	NELFE_DROME (P92204) Negative elongation factor E	38	0.027
7	SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich...	37	0.060
8	SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich...	37	0.060
9	NELFE_DROVI (Q95ZE9) Negative elongation factor E	37	0.078
10	PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-bi...	36	0.13
11	DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding prote...	36	0.13
12	HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)	35	0.17
13	DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1	35	0.30
14	NSR1_YEAST (P27476) Nuclear localization sequence-binding protei...	34	0.39
15	NONA_DROME (Q04047) Protein no-on-transient A (Puff-specific pro...	33	0.87
16	CWC2_USTMA (Q4PA86) Pre-mRNA-splicing factor CWC2	32	1.5
17	NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding prot...	32	1.5
18	NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding pr...	32	1.5
19	NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding pr...	32	1.5
20	NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding pr...	32	1.5
21	PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-b...	32	1.9
22	YP184_YEAST (Q08925) Putative RNA-binding protein YPL184C	32	1.9
23	ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B ...	32	2.5
24	RSD1_SCHPO (O13845) RNA-binding protein rsd1	32	2.5
25	MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing prote...	32	2.5
26	MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing prote...	31	3.3
27	STCK_EMENI (Q00706) Putative sterigmatocystin biosynthesis fatty...	31	4.3
28	NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Mul...	31	4.3
29	ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)	31	4.3
30	CWC2_YEAST (Q12046) Pre-mRNA-splicing factor CWC2 (Complexed wit...	30	5.6
31	MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing prote...	30	5.6
32	NELFE_MOUSE (P19426) Negative elongation factor E (NELF-E) (RD p...	30	5.6
33	NELFE_HUMAN (P18615) Negative elongation factor E (NELF-E) (RD p...	30	5.6
34	ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visu...	30	7.3
35	RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1	30	7.3
36	RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1	30	7.3
37	RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1	30	7.3
38	RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1	30	7.3
39	RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain...	30	7.3
40	NAB3_YEAST (P38996) Nuclear polyadenylated RNA-binding protein 3	30	7.3
41	RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif p...	30	7.3
42	ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visu...	30	7.3
43	ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (E...	30	9.6
44	SLT11_EMENI (Q5AX35) Pre-mRNA-splicing factor slt11	30	9.6
45	RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif p...	30	9.6
46	TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)	30	9.6

>NAM8_YEAST (Q00539) Protein NAM8|
          Length = 523

 Score = 70.5 bits (171), Expect = 5e-12
 Identities = 37/68 (54%), Positives = 42/68 (61%)
 Frame = -2

Query: 700 VTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXXXXXXXXXQNVRLSWG 521
           VTED L+  F P+G +V+VKIPVGK CGFVQY +R SAE               VRLSWG
Sbjct: 324 VTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWG 383

Query: 520 RSPSNKQT 497
           RS   KQT
Sbjct: 384 RSA--KQT 389

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>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome|
           II
          Length = 473

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
 Frame = -2

Query: 700 VTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXXXXXXXXXQNVRLSWG 521
           V+E+ LK +F  +GE+V+VKIP GK CGFVQ+ NR SAE               +RLSWG
Sbjct: 314 VSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWG 373

Query: 520 RSPS-------NKQTQPQEAT 479
           R+ +       N Q+Q  + T
Sbjct: 374 RNQNPIAAPALNYQSQVSQTT 394

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>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding|
           protein RBP1)
          Length = 672

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
 Frame = -2

Query: 712 LDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXXXXXXXXXQNVR 533
           L P  TE  L+ +F P+G +++V+IP GK CGFV++  R  AE               +R
Sbjct: 367 LVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIR 426

Query: 532 LSWGR-SPSNKQT 497
           LSWGR S SN +T
Sbjct: 427 LSWGRPSSSNAKT 439

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>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1|
          Length = 632

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 24/66 (36%), Positives = 39/66 (59%)
 Frame = -2

Query: 712 LDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXXXXXXXXXQNVR 533
           L  N++E  L+  F P+G ++++KIP GK CGFVQY+ + +AE              ++R
Sbjct: 304 LASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIR 363

Query: 532 LSWGRS 515
           L+WG +
Sbjct: 364 LAWGHN 369

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>YBKC_SCHPO (O94621) Hypothetical RNA-binding protein C1289.12 in chromosome II|
          Length = 352

 Score = 38.5 bits (88), Expect = 0.021
 Identities = 21/80 (26%), Positives = 35/80 (43%)
 Frame = -2

Query: 712 LDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXXXXXXXXXQNVR 533
           L  N+T   L+  F  +GE+++ +  V    G + +A R  AE               ++
Sbjct: 183 LPENITTQELRSYFLHFGEILYTQ--VNNNSGRIVFAQRYFAEQAINEMNNFPLHGVRIQ 240

Query: 532 LSWGRSPSNKQTQPQEATQW 473
           LSW R PS      +++T W
Sbjct: 241 LSWARPPSMALLPSKQSTYW 260

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>NELFE_DROME (P92204) Negative elongation factor E|
          Length = 280

 Score = 38.1 bits (87), Expect = 0.027
 Identities = 18/39 (46%), Positives = 25/39 (64%)
 Frame = -2

Query: 700 VTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 584
           VTED LK+ F  YG +V+V + + K  GFV +A   SA+
Sbjct: 175 VTEDFLKKTFNDYGTIVNVSMEIEKSRGFVSFAKPESAD 213

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>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit)
          Length = 699

 Score = 37.0 bits (84), Expect = 0.060
 Identities = 19/43 (44%), Positives = 26/43 (60%)
 Frame = -2

Query: 712 LDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 584
           L  ++TED  K++FA YGE   V I  GK  GF++  +R  AE
Sbjct: 296 LPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAE 338

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>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa
           DNA-pairing protein) (hPOMp
          Length = 707

 Score = 37.0 bits (84), Expect = 0.060
 Identities = 19/43 (44%), Positives = 26/43 (60%)
 Frame = -2

Query: 712 LDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 584
           L  ++TED  K++FA YGE   V I  GK  GF++  +R  AE
Sbjct: 304 LPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAE 346

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>NELFE_DROVI (Q95ZE9) Negative elongation factor E|
          Length = 281

 Score = 36.6 bits (83), Expect = 0.078
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = -2

Query: 700 VTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 584
           VTE+ LK+ F  YG +V+V + + K  GFV +A   SA+
Sbjct: 176 VTEEFLKKTFNDYGTIVNVSMEIEKSRGFVSFAKPESAD 214

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>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PABP 2)
          Length = 629

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = -2

Query: 712 LDPNVTEDALKQVFAPYGEVVHVKIPV-----GKRCGFVQYANRPSAE 584
           LD ++   AL   F+ +G +V  K+ V      K  GFVQYAN  SA+
Sbjct: 131 LDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQ 178



 Score = 34.7 bits (78), Expect = 0.30
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
 Frame = -2

Query: 712 LDPNVTEDALKQVFAPYGEVVHVKI---PVG--KRCGFVQYANRPSA 587
           LDP+++++ LK++F+P+G V   K+   P G  K  GFV +A    A
Sbjct: 325 LDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEA 371

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>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)|
          Length = 476

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = -2

Query: 691 DALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXXXXXXXXXQNVRLSWGRSP 512
           D L+ +F  +G ++ V +  GK  G+V+YA+R SA                +++    SP
Sbjct: 406 DVLEDIFCRFGNLIEVYLVSGKNVGYVKYADRKSANEAITTLHGKILNGVRLKVMLADSP 465

Query: 511 SNKQTQPQ 488
             +  + Q
Sbjct: 466 REESKKRQ 473

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>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)|
          Length = 535

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = -2

Query: 712 LDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 584
           L  +VTE+ LK++F+PYGE+    I   K   F++   R +AE
Sbjct: 120 LTSDVTEEELKELFSPYGEISEAFINAEKNFAFLKIDYRANAE 162

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>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1|
          Length = 476

 Score = 34.7 bits (78), Expect = 0.30
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -2

Query: 691 DALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSA 587
           D L+ +F  +G ++ V +  GK  G+V+YA+R SA
Sbjct: 406 DVLEDIFCRFGNLIEVYLVSGKNVGYVKYADRMSA 440

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>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)|
          Length = 414

 Score = 34.3 bits (77), Expect = 0.39
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = -2

Query: 703 NVTEDALKQVFAPYGEVVHVKIPV------GKRCGFVQYANRPSAEXXXXXXXXXXXXXQ 542
           N   DA+ ++FA +GEVV V+IP        K  G+VQ++N   A+             +
Sbjct: 277 NADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNR 336

Query: 541 NVRLSWGRSPSN 506
            VRL +     N
Sbjct: 337 PVRLDFSSPRPN 348

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>NONA_DROME (Q04047) Protein no-on-transient A (Puff-specific protein Bj6)|
          Length = 700

 Score = 33.1 bits (74), Expect = 0.87
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -2

Query: 712 LDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 584
           L  ++T+D L+++F PYGE+  +   + K   F++    P+AE
Sbjct: 309 LTNDITDDELREMFKPYGEISEIFSNLDKNFTFLKVDYHPNAE 351

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>CWC2_USTMA (Q4PA86) Pre-mRNA-splicing factor CWC2|
          Length = 480

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
 Frame = -2

Query: 703 NVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQY---ANRPSAEXXXXXXXXXXXXXQNVR 533
           N TE  +++ F+ +GE+  +++  G+ C FV +   AN   A+              NVR
Sbjct: 254 NATERVVRRHFSEWGEIDRLRVLTGRSCAFVTFKYEANAQFAKEAMLNQSLDHNEIINVR 313

Query: 532 LSWGRSPSNKQTQPQEATQ 476
             W     N   Q +   Q
Sbjct: 314 --WASDDPNPAAQKRNQEQ 330

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>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 476

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -2

Query: 712 LDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 584
           L P++TE+ ++++F  YG+   V I   K  GF++   R  AE
Sbjct: 86  LPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAE 128

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>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 471

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -2

Query: 712 LDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 584
           L P++TE+ ++++F  YG+   V I   K  GF++   R  AE
Sbjct: 81  LPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAE 123

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>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO|
           protein) (54 kDa nuclear RNA- and DNA-binding protein)
           (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55)
           (DNA-binding p52/p100 complex, 52 kDa subunit)
          Length = 471

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -2

Query: 712 LDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 584
           L P++TE+ ++++F  YG+   V I   K  GF++   R  AE
Sbjct: 81  LPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAE 123

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>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 473

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -2

Query: 712 LDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 584
           L P++TE+ ++++F  YG+   V I   K  GF++   R  AE
Sbjct: 83  LPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAE 125

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>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein|
           PUB1 (ARS consensus-binding protein ACBP-60)
           (Poly(U)-binding protein) (Poly uridylate-binding
           protein)
          Length = 452

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -2

Query: 712 LDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYA 602
           LD  +TED LKQ F   G + ++KI + K    V YA
Sbjct: 81  LDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYA 117



 Score = 31.6 bits (70), Expect = 2.5
 Identities = 19/71 (26%), Positives = 29/71 (40%)
 Frame = -2

Query: 697 TEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXXXXXXXXXQNVRLSWGR 518
           TE  L  +F  +G ++  K    K C F++Y     A              +N+R  WG+
Sbjct: 352 TEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 411

Query: 517 SPSNKQTQPQE 485
             SN   Q Q+
Sbjct: 412 ERSNFMPQQQQ 422

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>YP184_YEAST (Q08925) Putative RNA-binding protein YPL184C|
          Length = 612

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 697 TEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSA 587
           TE  L+ +F  YGEV  +     K C F+ Y N  +A
Sbjct: 543 TESNLRHIFQQYGEVEQINFLPEKNCCFINYTNISNA 579

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>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (CArG-binding factor-A) (CBF-A)
          Length = 285

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
 Frame = -2

Query: 712 LDPNVTEDALKQVFAPYGEVVHVKIPV----GKRCGFV 611
           L+P  TE+ +++ F  +GE+  +++P+     KR GFV
Sbjct: 166 LNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFV 203

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>RSD1_SCHPO (O13845) RNA-binding protein rsd1|
          Length = 604

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
 Frame = -2

Query: 703 NVTEDALKQVFAPYGEVVHVKIP-----VGKRCGFVQYANRPSAEXXXXXXXXXXXXXQN 539
           N+T++ +K +F P+G++  V +        K  G++QY N  SA              +N
Sbjct: 350 NLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRN 409

Query: 538 VRLSWGRSPSNKQT 497
           +R+  G      +T
Sbjct: 410 MRVCLGNDKFTTET 423

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>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1|
          Length = 838

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 703 NVTEDALKQVFAPYGEVVHVKIPVGKRCG 617
           + TE+  KQ+F+PYGE+  V + V  R G
Sbjct: 311 DATEEDFKQLFSPYGELEEVHVAVDTRTG 339

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>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1|
          Length = 861

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 697 TEDALKQVFAPYGEVVHVKIPVGKRCG 617
           TED  K++F+PYGE+  V + V  R G
Sbjct: 337 TEDDFKKLFSPYGELKEVHVAVDTRTG 363

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>STCK_EMENI (Q00706) Putative sterigmatocystin biosynthesis fatty acid synthase|
            beta subunit
          Length = 1914

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
 Frame = -3

Query: 219  VVAPVDREREGSWTPDFDRLMA---RSIWSIMHYVMSSCCPIV---ILQMCTGNYVLFCR 58
            ++   +R R  SW P FD L+    R    I H+ M+  C +V   +L+  TG  V+   
Sbjct: 1479 IIGDNERTRFCSWAPSFDGLVRANDRLRMEIQHFAMADGCMVVHVRVLKESTGEQVMHAE 1538

Query: 57   MXL 49
              L
Sbjct: 1539 AVL 1541

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>NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Multicopy|
           suppressor of sporulation protein msa2)
          Length = 529

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = -2

Query: 709 DPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXXXXXXXXXQNVRL 530
           D ++T + LK+ F  +GE+ +V     K C FV + +  SA              +N R+
Sbjct: 422 DDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASA-INAIDRIKQKKGYENYRI 480

Query: 529 SWGR 518
           S+G+
Sbjct: 481 SYGK 484

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>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)|
          Length = 326

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
 Frame = -2

Query: 712 LDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYANRPSAEXXXXXXXXXXX 551
           L  N+T+D L+ +F+  GEV   K+   K        GFV Y     AE           
Sbjct: 27  LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL 86

Query: 550 XXQNVRLSWGRSPS 509
             + +++S+ R  S
Sbjct: 87  QSKTIKVSYARPSS 100

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>CWC2_YEAST (Q12046) Pre-mRNA-splicing factor CWC2 (Complexed with CEF1 protein|
           2) (PRP19-associated complex protein 40) (Synthetic
           lethal with CLF1 protein 3)
          Length = 339

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 712 LDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 584
           L P   E  ++ VF+  G++  ++    K CGFV++  + +AE
Sbjct: 151 LKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAE 193

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>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1|
          Length = 878

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 697 TEDALKQVFAPYGEVVHVKIPVGKRCG 617
           TED  +++F+PYGE+  V I V  R G
Sbjct: 342 TEDDFRKLFSPYGELEEVHIAVDTRTG 368

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>NELFE_MOUSE (P19426) Negative elongation factor E (NELF-E) (RD protein)|
          Length = 375

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -2

Query: 703 NVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 584
           ++T   L+  F+P+G ++ + +   + C FV Y    SA+
Sbjct: 274 DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESAD 313

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>NELFE_HUMAN (P18615) Negative elongation factor E (NELF-E) (RD protein)|
          Length = 380

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -2

Query: 703 NVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 584
           ++T   L+  F+P+G ++ + +   + C FV Y    SA+
Sbjct: 270 DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESAD 309

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>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)|
          Length = 519

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
 Frame = -2

Query: 712 LDPNVTEDALKQVFAPYGEVVHVKI---PVGKRC---GFVQYANRPSA 587
           L P   E AL Q+F P+G V  VKI   P   +C   GFV   N   A
Sbjct: 445 LAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEA 492

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>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
 Frame = -2

Query: 712 LDPNVTEDALKQVFAPYGEVVHVKIPV-------GKRCGFVQYANRPSAE 584
           L  NVT+D + ++F+ YG++  + +PV        K   +V++ N   AE
Sbjct: 168 LTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAE 217

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>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
 Frame = -2

Query: 712 LDPNVTEDALKQVFAPYGEVVHVKIPV-------GKRCGFVQYANRPSAE 584
           L  NVT+D + ++F+ YG++  + +PV        K   +V++ N   AE
Sbjct: 168 LTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAE 217

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>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
 Frame = -2

Query: 712 LDPNVTEDALKQVFAPYGEVVHVKIPV-------GKRCGFVQYANRPSAE 584
           L  NVT+D + ++F+ YG++  + +PV        K   +V++ N   AE
Sbjct: 168 LTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAE 217

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>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
 Frame = -2

Query: 712 LDPNVTEDALKQVFAPYGEVVHVKIPV-------GKRCGFVQYANRPSAE 584
           L  NVT+D + ++F+ YG++  + +PV        K   +V++ N   AE
Sbjct: 168 LTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAE 217

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>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related|
           protein LDC2)
          Length = 305

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
 Frame = -2

Query: 712 LDPNVTEDALKQVFAPYGEVVHVKIPV-------GKRCGFVQYANRPSAE 584
           L  NVT+D + ++F+ YG++  + +PV        K   +V++ N   AE
Sbjct: 168 LTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAE 217

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>NAB3_YEAST (P38996) Nuclear polyadenylated RNA-binding protein 3|
          Length = 802

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -2

Query: 703 NVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPS 590
           NV+++ L ++F+PYG ++ + I      GF+Q+ N  S
Sbjct: 341 NVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQS 376

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>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 758

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
 Frame = -2

Query: 697 TEDALKQVFAPYGEVVHVKI---PVGKR--CGFVQYAN 599
           +ED LK VFA +G V+ V I   P GK    GFVQ+ N
Sbjct: 125 SEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKN 162

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>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)|
          Length = 483

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
 Frame = -2

Query: 712 LDPNVTEDALKQVFAPYGEVVHVKI---PVGKRC---GFVQYANRPSA 587
           L P   E AL Q+F P+G V  VKI   P   +C   GFV   N   A
Sbjct: 409 LAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEA 456

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>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like|
           generic protein) (MelG)
          Length = 326

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
 Frame = -2

Query: 712 LDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYANRPSAEXXXXXXXXXXX 551
           L  N+T++ L+ +F+  GEV   K+   K        GFV Y     AE           
Sbjct: 27  LPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRL 86

Query: 550 XXQNVRLSWGRSPS 509
             + +++S+ R  S
Sbjct: 87  QSKTIKVSYARPSS 100

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>SLT11_EMENI (Q5AX35) Pre-mRNA-splicing factor slt11|
          Length = 385

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 12/54 (22%)
 Frame = -2

Query: 709 DPNVT------------EDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 584
           DPN+T            E AL+  F  +G++  +       C F+ YA R SAE
Sbjct: 233 DPNITSLFVTGVEDDLPEHALRSFFVQFGQLRSLVCSHRAHCAFINYAARESAE 286

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>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 749

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
 Frame = -2

Query: 697 TEDALKQVFAPYGEVVHVKIPV---GKRCG--FVQYAN 599
           +ED LK VF  YG V+ V IP    GK  G  FVQ+ N
Sbjct: 125 SEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKN 162

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>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)|
          Length = 414

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -2

Query: 703 NVTEDALKQVFAPYGEVVHVKIPVGKRC-GFVQYANRPSAE 584
           ++TED L++ F+ YG+V+ V IP   R   FV +A+   A+
Sbjct: 201 DMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQ 241


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,204,847
Number of Sequences: 219361
Number of extensions: 1791822
Number of successful extensions: 4655
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 4462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4651
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7252940416
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result