ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6k12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DQ175904.1| Hordeum vulgare subsp. vulgare clone 28-52A-LB fl... 293 1e-76
2emb|X86903.1|TAFKBP70 T.aestivum mRNA for peptidylprolyl cis-tra... 72 7e-10
3gb|AC165348.3| Mus musculus BAC clone RP23-300C11 from chromosom... 40 2.6
4emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete... 40 2.6
5emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome 40 2.6
6emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, comple... 40 2.6

>gb|DQ175904.1| Hordeum vulgare subsp. vulgare clone 28-52A-LB flanking T-DNA
           insertion sequence
          Length = 699

 Score =  293 bits (148), Expect = 1e-76
 Identities = 162/164 (98%), Gaps = 2/164 (1%)
 Strand = Plus / Plus

                                                                       
Query: 46  accacctattgcccggaacgcacaaactataatatgcaaggtctaaacatgnaactttta 105
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 125 accacctattgcccggaacgcacaaactataatatgcaaggtctaaacatg-aactttta 183

                                                                       
Query: 106 aacaaggaaaaattatcgcctggcaccctcaactgaaatttctctagtttttagcaactc 165
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 aacaag-aaaaattatcgcctggcaccctcaactgaaatttctctagtttttagcaactc 242

                                                       
Query: 166 ccaagcatatgggtcttctaaccaaccagagctaagcagacaag 209
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ccaagcatatgggtcttctaaccaaccagagctaagcagacaag 286



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>emb|X86903.1|TAFKBP70 T.aestivum mRNA for peptidylprolyl cis-trans isomerase, FK506
          Length = 2027

 Score = 71.9 bits (36), Expect = 7e-10
 Identities = 98/114 (85%), Gaps = 5/114 (4%)
 Strand = Plus / Minus

                                                                        
Query: 57   cccggaacgcacaaactataatatgcaa-ggtctaaacatgnaacttt-taaacaaggaa 114
            ||||||| ||||| |||||||||||||| |||||||||||| |   || |  ||||| ||
Sbjct: 1999 cccggaaagcacacactataatatgcaaaggtctaaacatgcattgttcttgacaagaaa 1940

                                                                  
Query: 115  aaattatcgcctggcaccctcaa--ctgaaatttctctagtttttagcaactcc 166
            |||| || |||||||| ||||||  |||||||||||||||||||||||||||||
Sbjct: 1939 aaat-attgcctggcaacctcaaaactgaaatttctctagtttttagcaactcc 1887



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>gb|AC165348.3| Mus musculus BAC clone RP23-300C11 from chromosome 3, complete sequence
          Length = 198637

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     aacttttaaacaaggaaaaa 117
              ||||||||||||||||||||
Sbjct: 127329 aacttttaaacaaggaaaaa 127310



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>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome
          Length = 1512977

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 98      aacttttaaacaaggaaaaa 117
               ||||||||||||||||||||
Sbjct: 1419613 aacttttaaacaaggaaaaa 1419632



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>emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome
          Length = 1499920

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 98      aacttttaaacaaggaaaaa 117
               ||||||||||||||||||||
Sbjct: 1406617 aacttttaaacaaggaaaaa 1406636



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>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome
          Length = 1516355

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 98      aacttttaaacaaggaaaaa 117
               ||||||||||||||||||||
Sbjct: 1441601 aacttttaaacaaggaaaaa 1441620


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,636,176
Number of Sequences: 3902068
Number of extensions: 1636176
Number of successful extensions: 111214
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111162
Number of HSP's gapped (non-prelim): 49
length of query: 209
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 187
effective length of database: 17,147,199,772
effective search space: 3206526357364
effective search space used: 3206526357364
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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