ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6k09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK063760.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 3e-36
2dbj|AK110847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 1e-26
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 111 3e-21
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 111 3e-21
5emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa... 111 3e-21
6gb|AY107501.1| Zea mays PCO142223 mRNA sequence 100 1e-17
7gb|DQ207660.1| Zea mays cultivar B73 IDP138 marker 66 1e-07
8ref|XM_470049.1| Oryza sativa (japonica cultivar-group), mRNA 54 6e-04
9gb|DQ207661.1| Zea mays cultivar inbred line Mo17 IDP138 marker 54 6e-04
10gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 54 6e-04
11gb|AC137507.3| Oryza sativa chromosome 3 BAC OSJNBb0033J23 genom... 54 6e-04
12dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
13dbj|AK103214.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 6e-04
14ref|NM_111546.2| Arabidopsis thaliana protein binding AT3G06660 ... 46 0.14
15gb|AY117257.1| Arabidopsis thaliana unknown protein (At3g06660) ... 46 0.14
16gb|AY034922.1| Arabidopsis thaliana unknown protein (At3g06660) ... 46 0.14
17gb|AC023912.5|ATAC023912 Arabidopsis thaliana chromosome III BAC... 42 2.1
18gb|AC036106.6|AC036106 Arabidopsis thaliana chromosome 3 BAC T8E... 42 2.1
19gb|AC151710.1| Pan troglodytes chromosome X clone PTB-084K12 map... 40 8.4
20gb|AC127367.4| Mus musculus BAC clone RP23-19G15 from chromosome... 40 8.4
21gb|CP000114.1| Streptococcus agalactiae A909, complete genome 40 8.4
22gb|AF131216.2| Homo sapiens chromosome 8 map 8p23-p22 clone CTB-... 40 8.4
23gb|AC122386.3| Mus musculus BAC clone RP24-72H18 from chromosome... 40 8.4
24emb|AL357774.11| Human DNA sequence from clone RP11-473N15 on ch... 40 8.4
25gb|AE014205.1| Streptococcus agalactiae 2603V/R section 15 of 10... 40 8.4
26emb|AL766844.1|SAG766844 Streptococcus agalactiae NEM316 complet... 40 8.4
27gb|AC100809.9| Homo sapiens chromosome 8, clone CTC-493P15, comp... 40 8.4
28gb|AC156031.2| Mus musculus BAC clone RP24-531B21 from 9, comple... 40 8.4
29emb|BX537613.1|HSM806370 Homo sapiens mRNA; cDNA DKFZp686E11117 ... 40 8.4

>dbj|AK063760.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-A11, full
            insert sequence
          Length = 1532

 Score =  161 bits (81), Expect = 3e-36
 Identities = 165/193 (85%)
 Strand = Plus / Minus

                                                                        
Query: 243  gctttgtagcactctaggctgcagagggggagcttcagcttcgagtccctgtaccggtac 302
            ||||||||||| |  ||||||||||||||||| |||||||| |||||||| |||||||| 
Sbjct: 1097 gctttgtagcatttcaggctgcagagggggagattcagcttggagtccctataccggtat 1038

                                                                        
Query: 303  gcgttcgtgcaagacggtccggcgcacttctcacgcggcggagggtagctgcagggtttg 362
            ||||||||||| || |||||||| || ||||| ||||| ||||||||| |||| || |||
Sbjct: 1037 gcgttcgtgcatgatggtccggcacatttctctcgcgggggagggtagttgcaaggcttg 978

                                                                        
Query: 363  gagttgaagatacttgggaggcctacatcttcagggaacgtaaccaccgtgcctgtgggc 422
            ||||||||||| || || |||||||| ||||| ||||| | |||||| |||||  | || 
Sbjct: 977  gagttgaagatgctgggaaggcctacttcttccgggaatgaaaccacggtgccctttggg 918

                         
Query: 423  cccatgacccacc 435
            |||||||||||||
Sbjct: 917  cccatgacccacc 905



 Score =  129 bits (65), Expect = 1e-26
 Identities = 80/85 (94%)
 Strand = Plus / Minus

                                                                       
Query: 528 tccaggcccagtattttccttatagcttcagcctcgctttctttagtggctttctccact 587
           ||||||||||  ||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct: 812 tccaggcccaaaattttccttatagcttcagcctcgctttctttagtagccttctcgact 753

                                    
Query: 588 tgcatcttgcgccgctgagcagcct 612
           |||||||||||||||||||||||||
Sbjct: 752 tgcatcttgcgccgctgagcagcct 728



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>dbj|AK110847.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-C01, full
            insert sequence
          Length = 1520

 Score =  129 bits (65), Expect = 1e-26
 Identities = 80/85 (94%)
 Strand = Plus / Minus

                                                                        
Query: 528  tccaggcccagtattttccttatagcttcagcctcgctttctttagtggctttctccact 587
            ||||||||||  ||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct: 1507 tccaggcccaaaattttccttatagcttcagcctcgctttctttagtagccttctcgact 1448

                                     
Query: 588  tgcatcttgcgccgctgagcagcct 612
            |||||||||||||||||||||||||
Sbjct: 1447 tgcatcttgcgccgctgagcagcct 1423



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  111 bits (56), Expect = 3e-21
 Identities = 98/112 (87%)
 Strand = Plus / Plus

                                                                            
Query: 243      gctttgtagcactctaggctgcagagggggagcttcagcttcgagtccctgtaccggtac 302
                ||||||||||| |  ||||||||||| ||||| |||||||| |||||||| |||||||| 
Sbjct: 23007001 gctttgtagcatttcaggctgcagagagggagattcagcttggagtccctataccggtat 23007060

                                                                    
Query: 303      gcgttcgtgcaagacggtccggcgcacttctcacgcggcggagggtagctgc 354
                ||||||||||| || |||||||| || ||||| ||||| |||||||||||||
Sbjct: 23007061 gcgttcgtgcatgatggtccggcacatttctctcgcgggggagggtagctgc 23007112



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 51/54 (94%)
 Strand = Plus / Plus

                                                                      
Query: 559      cctcgctttctttagtggctttctccacttgcatcttgcgccgctgagcagcct 612
                |||||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 23007641 cctcgctttctttagtagccttctcgacttgcatcttgcgccgctgagcagcct 23007694



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 64/76 (84%)
 Strand = Plus / Plus

                                                                            
Query: 360      ttggagttgaagatacttgggaggcctacatcttcagggaacgtaaccaccgtgcctgtg 419
                |||||||||||||| || || |||||||| ||||| ||||| | |||||| |||||  | 
Sbjct: 23007215 ttggagttgaagatgctgggaaggcctacttcttccgggaatgaaaccacggtgcccttt 23007274

                                
Query: 420      ggccccatgacccacc 435
                || |||||||||||||
Sbjct: 23007275 gggcccatgacccacc 23007290



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                  
Query: 528      tccaggcccagtattttccttatagcttcagcct 561
                ||||||||||  ||||||||||||||||||||||
Sbjct: 23007524 tccaggcccaaaattttccttatagcttcagcct 23007557



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  111 bits (56), Expect = 3e-21
 Identities = 98/112 (87%)
 Strand = Plus / Plus

                                                                            
Query: 243      gctttgtagcactctaggctgcagagggggagcttcagcttcgagtccctgtaccggtac 302
                ||||||||||| |  ||||||||||| ||||| |||||||| |||||||| |||||||| 
Sbjct: 22935192 gctttgtagcatttcaggctgcagagagggagattcagcttggagtccctataccggtat 22935251

                                                                    
Query: 303      gcgttcgtgcaagacggtccggcgcacttctcacgcggcggagggtagctgc 354
                ||||||||||| || |||||||| || ||||| ||||| |||||||||||||
Sbjct: 22935252 gcgttcgtgcatgatggtccggcacatttctctcgcgggggagggtagctgc 22935303



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 51/54 (94%)
 Strand = Plus / Plus

                                                                      
Query: 559      cctcgctttctttagtggctttctccacttgcatcttgcgccgctgagcagcct 612
                |||||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 22935832 cctcgctttctttagtagccttctcgacttgcatcttgcgccgctgagcagcct 22935885



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 64/76 (84%)
 Strand = Plus / Plus

                                                                            
Query: 360      ttggagttgaagatacttgggaggcctacatcttcagggaacgtaaccaccgtgcctgtg 419
                |||||||||||||| || || |||||||| ||||| ||||| | |||||| |||||  | 
Sbjct: 22935406 ttggagttgaagatgctgggaaggcctacttcttccgggaatgaaaccacggtgcccttt 22935465

                                
Query: 420      ggccccatgacccacc 435
                || |||||||||||||
Sbjct: 22935466 gggcccatgacccacc 22935481



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                  
Query: 528      tccaggcccagtattttccttatagcttcagcct 561
                ||||||||||  ||||||||||||||||||||||
Sbjct: 22935715 tccaggcccaaaattttccttatagcttcagcct 22935748



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>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 155568

 Score =  111 bits (56), Expect = 3e-21
 Identities = 98/112 (87%)
 Strand = Plus / Plus

                                                                          
Query: 243    gctttgtagcactctaggctgcagagggggagcttcagcttcgagtccctgtaccggtac 302
              ||||||||||| |  ||||||||||| ||||| |||||||| |||||||| |||||||| 
Sbjct: 116278 gctttgtagcatttcaggctgcagagagggagattcagcttggagtccctataccggtat 116337

                                                                  
Query: 303    gcgttcgtgcaagacggtccggcgcacttctcacgcggcggagggtagctgc 354
              ||||||||||| || |||||||| || ||||| ||||| |||||||||||||
Sbjct: 116338 gcgttcgtgcatgatggtccggcacatttctctcgcgggggagggtagctgc 116389



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 51/54 (94%)
 Strand = Plus / Plus

                                                                    
Query: 559    cctcgctttctttagtggctttctccacttgcatcttgcgccgctgagcagcct 612
              |||||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 116918 cctcgctttctttagtagccttctcgacttgcatcttgcgccgctgagcagcct 116971



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 64/76 (84%)
 Strand = Plus / Plus

                                                                          
Query: 360    ttggagttgaagatacttgggaggcctacatcttcagggaacgtaaccaccgtgcctgtg 419
              |||||||||||||| || || |||||||| ||||| ||||| | |||||| |||||  | 
Sbjct: 116492 ttggagttgaagatgctgggaaggcctacttcttccgggaatgaaaccacggtgcccttt 116551

                              
Query: 420    ggccccatgacccacc 435
              || |||||||||||||
Sbjct: 116552 gggcccatgacccacc 116567



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                
Query: 528    tccaggcccagtattttccttatagcttcagcct 561
              ||||||||||  ||||||||||||||||||||||
Sbjct: 116801 tccaggcccaaaattttccttatagcttcagcct 116834



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>gb|AY107501.1| Zea mays PCO142223 mRNA sequence
          Length = 605

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 71/78 (91%)
 Strand = Plus / Minus

                                                                       
Query: 533 gcccagtattttccttatagcttcagcctcgctttctttagtggctttctccacttgcat 592
           ||||| |||||||||||||||||| ||||| |||||||||||||| || |||||||||||
Sbjct: 159 gcccaatattttccttatagcttccgcctcactttctttagtggccttttccacttgcat 100

                             
Query: 593 cttgcgccgctgagcagc 610
           | |||||| |||||||||
Sbjct: 99  cctgcgcctctgagcagc 82



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 118/143 (82%)
 Strand = Plus / Minus

                                                                       
Query: 246 ttgtagcactctaggctgcagagggggagcttcagcttcgagtccctgtaccggtacgcg 305
           ||||||||||  ||||||||||||||||| |||||||| |||| |||||||  |||  ||
Sbjct: 446 ttgtagcacttgaggctgcagagggggaggttcagcttggagtgcctgtacttgtaatcg 387

                                                                       
Query: 306 ttcgtgcaagacggtccggcgcacttctcacgcggcggagggtagctgcagggtttggag 365
           |||||||| || || || ||||| ||||| || || ||||| ||||||   || ||||||
Sbjct: 386 ttcgtgcacgatggcccagcgcatttctcccgtggaggaggatagctgtgtggcttggag 327

                                  
Query: 366 ttgaagatacttgggaggcctac 388
           | |||||| || |||||||||||
Sbjct: 326 tcgaagatgctggggaggcctac 304



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>gb|DQ207660.1| Zea mays cultivar B73 IDP138 marker
          Length = 273

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                       
Query: 246 ttgtagcactctaggctgcagagggggagcttcagcttcgagtccctgtaccggtacgcg 305
           ||||||||||  ||||||||||||||||| |||||||| |||| |||||||  |||  ||
Sbjct: 169 ttgtagcacttgaggctgcagagggggaggttcagcttggagtgcctgtacttgtaatcg 228

                                        
Query: 306 ttcgtgcaagacggtccggcgcacttctc 334
           |||||||| || || || ||||| |||||
Sbjct: 229 ttcgtgcacgatggcccagcgcatttctc 257



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>ref|XM_470049.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1875

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                       
Query: 238  ggacagctttgtagcactctaggctgcagagggggagcttcagcttcgagtccctgtac 296
            ||||||| ||||||||||  ||||||||||| || ||||||  ||||||||||| ||||
Sbjct: 1522 ggacagccttgtagcactgcaggctgcagagcggaagcttcgtcttcgagtcccggtac 1464



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>gb|DQ207661.1| Zea mays cultivar inbred line Mo17 IDP138 marker
          Length = 351

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 46/51 (90%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                              
Query: 246 ttgtagcactctaggctgcagagggggagcttcagcttcgagtccctgtac 296
           ||||||||||  ||||||||||||||||| |||||||| |||| |||||||
Sbjct: 80  ttgtagcacttgaggctgcagagggggaggttcagctt-gagtgcctgtac 31



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                           
Query: 238      ggacagctttgtagcactctaggctgcagagggggagcttcagcttcgagtccctgtac 296
                ||||||| ||||||||||  ||||||||||| || ||||||  ||||||||||| ||||
Sbjct: 33684721 ggacagccttgtagcactgcaggctgcagagcggaagcttcgtcttcgagtcccggtac 33684779



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>gb|AC137507.3| Oryza sativa chromosome 3 BAC OSJNBb0033J23 genomic sequence, complete
             sequence
          Length = 126862

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                        
Query: 238   ggacagctttgtagcactctaggctgcagagggggagcttcagcttcgagtccctgtac 296
             ||||||| ||||||||||  ||||||||||| || ||||||  ||||||||||| ||||
Sbjct: 56090 ggacagccttgtagcactgcaggctgcagagcggaagcttcgtcttcgagtcccggtac 56148



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                           
Query: 238      ggacagctttgtagcactctaggctgcagagggggagcttcagcttcgagtccctgtac 296
                ||||||| ||||||||||  ||||||||||| || ||||||  ||||||||||| ||||
Sbjct: 33775193 ggacagccttgtagcactgcaggctgcagagcggaagcttcgtcttcgagtcccggtac 33775251



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>dbj|AK103214.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033122M20, full
            insert sequence
          Length = 2080

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                       
Query: 238  ggacagctttgtagcactctaggctgcagagggggagcttcagcttcgagtccctgtac 296
            ||||||| ||||||||||  ||||||||||| || ||||||  ||||||||||| ||||
Sbjct: 1689 ggacagccttgtagcactgcaggctgcagagcggaagcttcgtcttcgagtcccggtac 1631



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>ref|NM_111546.2| Arabidopsis thaliana protein binding AT3G06660 mRNA, complete cds
          Length = 1686

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 537  agtattttccttatagcttcagcctcg 563
            ||||||||||| |||||||||||||||
Sbjct: 1213 agtattttcctgatagcttcagcctcg 1187



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>gb|AY117257.1| Arabidopsis thaliana unknown protein (At3g06660) mRNA, complete cds
          Length = 1315

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 537 agtattttccttatagcttcagcctcg 563
           ||||||||||| |||||||||||||||
Sbjct: 941 agtattttcctgatagcttcagcctcg 915



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>gb|AY034922.1| Arabidopsis thaliana unknown protein (At3g06660) mRNA, complete cds
          Length = 1699

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 537  agtattttccttatagcttcagcctcg 563
            ||||||||||| |||||||||||||||
Sbjct: 1213 agtattttcctgatagcttcagcctcg 1187



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>gb|AC023912.5|ATAC023912 Arabidopsis thaliana chromosome III BAC F3E22 genomic sequence,
             complete sequence
          Length = 63767

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 537   agtattttccttatagcttcagcct 561
             ||||||||||| |||||||||||||
Sbjct: 62177 agtattttcctgatagcttcagcct 62201



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>gb|AC036106.6|AC036106 Arabidopsis thaliana chromosome 3 BAC T8E24 genomic sequence, complete
             sequence
          Length = 51646

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 537   agtattttccttatagcttcagcct 561
             ||||||||||| |||||||||||||
Sbjct: 16761 agtattttcctgatagcttcagcct 16785



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>gb|AC151710.1| Pan troglodytes chromosome X clone PTB-084K12 map human ortholog q23,
             complete sequence
          Length = 174741

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 355   agggtttggagttgaagatacttgggaggcct 386
             |||||||||||||  ||| |||||||||||||
Sbjct: 67624 agggtttggagttagagagacttgggaggcct 67593



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>gb|AC127367.4| Mus musculus BAC clone RP23-19G15 from chromosome 9, complete sequence
          Length = 176541

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   ctttgtagcactctaggctg 263
             ||||||||||||||||||||
Sbjct: 32002 ctttgtagcactctaggctg 31983



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>gb|CP000114.1| Streptococcus agalactiae A909, complete genome
          Length = 2127839

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 535    ccagtattttccttatagcttcagcctc 562
              |||||||||||| || ||||||||||||
Sbjct: 328257 ccagtattttccatacagcttcagcctc 328230



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>gb|AF131216.2| Homo sapiens chromosome 8 map 8p23-p22 clone CTB-164D9, CTB-169o5,
             CTB-65D4, CTC-271o23, CTC-367J24, complete sequence; and
             clones CTC-493P15, CTB-91N18, partial sequence
          Length = 321261

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 549   atagcttcagcctcgctttcttta 572
             |||||||||||||| |||||||||
Sbjct: 23902 atagcttcagcctcactttcttta 23879



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>gb|AC122386.3| Mus musculus BAC clone RP24-72H18 from chromosome 7, complete sequence
          Length = 161949

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 99     gctatgtgtaactattttgtaact 122
              ||||| ||||||||||||||||||
Sbjct: 109564 gctatttgtaactattttgtaact 109541



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>emb|AL357774.11| Human DNA sequence from clone RP11-473N15 on chromosome X Contains the 5'
              end of the PAK3 gene for p21 (CDKN1A)-activated kinase 3,
              complete sequence
          Length = 156498

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 355    agggtttggagttgaagatacttgggaggcct 386
              |||||||||||||  ||| |||||||||||||
Sbjct: 153702 agggtttggagttagagagacttgggaggcct 153671



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>gb|AE014205.1| Streptococcus agalactiae 2603V/R section 15 of 100 of the complete
             genome
          Length = 20094

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 535   ccagtattttccttatagcttcagcctc 562
             |||||||||||| || ||||||||||||
Sbjct: 15639 ccagtattttccatacagcttcagcctc 15612



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>emb|AL766844.1|SAG766844 Streptococcus agalactiae NEM316 complete genome, segment 2
          Length = 240050

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 535    ccagtattttccttatagcttcagcctc 562
              |||||||||||| || ||||||||||||
Sbjct: 177116 ccagtattttccatacagcttcagcctc 177089



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>gb|AC100809.9| Homo sapiens chromosome 8, clone CTC-493P15, complete sequence
          Length = 184851

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 549   atagcttcagcctcgctttcttta 572
             |||||||||||||| |||||||||
Sbjct: 48395 atagcttcagcctcactttcttta 48418



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>gb|AC156031.2| Mus musculus BAC clone RP24-531B21 from 9, complete sequence
          Length = 169736

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 244   ctttgtagcactctaggctg 263
             ||||||||||||||||||||
Sbjct: 63944 ctttgtagcactctaggctg 63963



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>emb|BX537613.1|HSM806370 Homo sapiens mRNA; cDNA DKFZp686E11117 (from clone DKFZp686E11117)
          Length = 4957

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 355  agggtttggagttgaagatacttgggaggcct 386
            |||||||||||||  ||| |||||||||||||
Sbjct: 4338 agggtttggagttagagagacttgggaggcct 4307


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,948,412
Number of Sequences: 3902068
Number of extensions: 3948412
Number of successful extensions: 62104
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61955
Number of HSP's gapped (non-prelim): 149
length of query: 616
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 593
effective length of database: 17,143,297,704
effective search space: 10165975538472
effective search space used: 10165975538472
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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