| Clone Name | rbags6k09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK063760.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-A11, full insert sequence Length = 1532 Score = 161 bits (81), Expect = 3e-36 Identities = 165/193 (85%) Strand = Plus / Minus Query: 243 gctttgtagcactctaggctgcagagggggagcttcagcttcgagtccctgtaccggtac 302 ||||||||||| | ||||||||||||||||| |||||||| |||||||| |||||||| Sbjct: 1097 gctttgtagcatttcaggctgcagagggggagattcagcttggagtccctataccggtat 1038 Query: 303 gcgttcgtgcaagacggtccggcgcacttctcacgcggcggagggtagctgcagggtttg 362 ||||||||||| || |||||||| || ||||| ||||| ||||||||| |||| || ||| Sbjct: 1037 gcgttcgtgcatgatggtccggcacatttctctcgcgggggagggtagttgcaaggcttg 978 Query: 363 gagttgaagatacttgggaggcctacatcttcagggaacgtaaccaccgtgcctgtgggc 422 ||||||||||| || || |||||||| ||||| ||||| | |||||| ||||| | || Sbjct: 977 gagttgaagatgctgggaaggcctacttcttccgggaatgaaaccacggtgccctttggg 918 Query: 423 cccatgacccacc 435 ||||||||||||| Sbjct: 917 cccatgacccacc 905 Score = 129 bits (65), Expect = 1e-26 Identities = 80/85 (94%) Strand = Plus / Minus Query: 528 tccaggcccagtattttccttatagcttcagcctcgctttctttagtggctttctccact 587 |||||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||| Sbjct: 812 tccaggcccaaaattttccttatagcttcagcctcgctttctttagtagccttctcgact 753 Query: 588 tgcatcttgcgccgctgagcagcct 612 ||||||||||||||||||||||||| Sbjct: 752 tgcatcttgcgccgctgagcagcct 728
>dbj|AK110847.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-C01, full insert sequence Length = 1520 Score = 129 bits (65), Expect = 1e-26 Identities = 80/85 (94%) Strand = Plus / Minus Query: 528 tccaggcccagtattttccttatagcttcagcctcgctttctttagtggctttctccact 587 |||||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||| Sbjct: 1507 tccaggcccaaaattttccttatagcttcagcctcgctttctttagtagccttctcgact 1448 Query: 588 tgcatcttgcgccgctgagcagcct 612 ||||||||||||||||||||||||| Sbjct: 1447 tgcatcttgcgccgctgagcagcct 1423
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 111 bits (56), Expect = 3e-21 Identities = 98/112 (87%) Strand = Plus / Plus Query: 243 gctttgtagcactctaggctgcagagggggagcttcagcttcgagtccctgtaccggtac 302 ||||||||||| | ||||||||||| ||||| |||||||| |||||||| |||||||| Sbjct: 23007001 gctttgtagcatttcaggctgcagagagggagattcagcttggagtccctataccggtat 23007060 Query: 303 gcgttcgtgcaagacggtccggcgcacttctcacgcggcggagggtagctgc 354 ||||||||||| || |||||||| || ||||| ||||| ||||||||||||| Sbjct: 23007061 gcgttcgtgcatgatggtccggcacatttctctcgcgggggagggtagctgc 23007112 Score = 83.8 bits (42), Expect = 6e-13 Identities = 51/54 (94%) Strand = Plus / Plus Query: 559 cctcgctttctttagtggctttctccacttgcatcttgcgccgctgagcagcct 612 |||||||||||||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 23007641 cctcgctttctttagtagccttctcgacttgcatcttgcgccgctgagcagcct 23007694 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Plus Query: 360 ttggagttgaagatacttgggaggcctacatcttcagggaacgtaaccaccgtgcctgtg 419 |||||||||||||| || || |||||||| ||||| ||||| | |||||| ||||| | Sbjct: 23007215 ttggagttgaagatgctgggaaggcctacttcttccgggaatgaaaccacggtgcccttt 23007274 Query: 420 ggccccatgacccacc 435 || ||||||||||||| Sbjct: 23007275 gggcccatgacccacc 23007290 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 528 tccaggcccagtattttccttatagcttcagcct 561 |||||||||| |||||||||||||||||||||| Sbjct: 23007524 tccaggcccaaaattttccttatagcttcagcct 23007557
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 111 bits (56), Expect = 3e-21 Identities = 98/112 (87%) Strand = Plus / Plus Query: 243 gctttgtagcactctaggctgcagagggggagcttcagcttcgagtccctgtaccggtac 302 ||||||||||| | ||||||||||| ||||| |||||||| |||||||| |||||||| Sbjct: 22935192 gctttgtagcatttcaggctgcagagagggagattcagcttggagtccctataccggtat 22935251 Query: 303 gcgttcgtgcaagacggtccggcgcacttctcacgcggcggagggtagctgc 354 ||||||||||| || |||||||| || ||||| ||||| ||||||||||||| Sbjct: 22935252 gcgttcgtgcatgatggtccggcacatttctctcgcgggggagggtagctgc 22935303 Score = 83.8 bits (42), Expect = 6e-13 Identities = 51/54 (94%) Strand = Plus / Plus Query: 559 cctcgctttctttagtggctttctccacttgcatcttgcgccgctgagcagcct 612 |||||||||||||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 22935832 cctcgctttctttagtagccttctcgacttgcatcttgcgccgctgagcagcct 22935885 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Plus Query: 360 ttggagttgaagatacttgggaggcctacatcttcagggaacgtaaccaccgtgcctgtg 419 |||||||||||||| || || |||||||| ||||| ||||| | |||||| ||||| | Sbjct: 22935406 ttggagttgaagatgctgggaaggcctacttcttccgggaatgaaaccacggtgcccttt 22935465 Query: 420 ggccccatgacccacc 435 || ||||||||||||| Sbjct: 22935466 gggcccatgacccacc 22935481 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 528 tccaggcccagtattttccttatagcttcagcct 561 |||||||||| |||||||||||||||||||||| Sbjct: 22935715 tccaggcccaaaattttccttatagcttcagcct 22935748
>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155568 Score = 111 bits (56), Expect = 3e-21 Identities = 98/112 (87%) Strand = Plus / Plus Query: 243 gctttgtagcactctaggctgcagagggggagcttcagcttcgagtccctgtaccggtac 302 ||||||||||| | ||||||||||| ||||| |||||||| |||||||| |||||||| Sbjct: 116278 gctttgtagcatttcaggctgcagagagggagattcagcttggagtccctataccggtat 116337 Query: 303 gcgttcgtgcaagacggtccggcgcacttctcacgcggcggagggtagctgc 354 ||||||||||| || |||||||| || ||||| ||||| ||||||||||||| Sbjct: 116338 gcgttcgtgcatgatggtccggcacatttctctcgcgggggagggtagctgc 116389 Score = 83.8 bits (42), Expect = 6e-13 Identities = 51/54 (94%) Strand = Plus / Plus Query: 559 cctcgctttctttagtggctttctccacttgcatcttgcgccgctgagcagcct 612 |||||||||||||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 116918 cctcgctttctttagtagccttctcgacttgcatcttgcgccgctgagcagcct 116971 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Plus Query: 360 ttggagttgaagatacttgggaggcctacatcttcagggaacgtaaccaccgtgcctgtg 419 |||||||||||||| || || |||||||| ||||| ||||| | |||||| ||||| | Sbjct: 116492 ttggagttgaagatgctgggaaggcctacttcttccgggaatgaaaccacggtgcccttt 116551 Query: 420 ggccccatgacccacc 435 || ||||||||||||| Sbjct: 116552 gggcccatgacccacc 116567 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 528 tccaggcccagtattttccttatagcttcagcct 561 |||||||||| |||||||||||||||||||||| Sbjct: 116801 tccaggcccaaaattttccttatagcttcagcct 116834
>gb|AY107501.1| Zea mays PCO142223 mRNA sequence Length = 605 Score = 99.6 bits (50), Expect = 1e-17 Identities = 71/78 (91%) Strand = Plus / Minus Query: 533 gcccagtattttccttatagcttcagcctcgctttctttagtggctttctccacttgcat 592 ||||| |||||||||||||||||| ||||| |||||||||||||| || ||||||||||| Sbjct: 159 gcccaatattttccttatagcttccgcctcactttctttagtggccttttccacttgcat 100 Query: 593 cttgcgccgctgagcagc 610 | |||||| ||||||||| Sbjct: 99 cctgcgcctctgagcagc 82 Score = 85.7 bits (43), Expect = 2e-13 Identities = 118/143 (82%) Strand = Plus / Minus Query: 246 ttgtagcactctaggctgcagagggggagcttcagcttcgagtccctgtaccggtacgcg 305 |||||||||| ||||||||||||||||| |||||||| |||| ||||||| ||| || Sbjct: 446 ttgtagcacttgaggctgcagagggggaggttcagcttggagtgcctgtacttgtaatcg 387 Query: 306 ttcgtgcaagacggtccggcgcacttctcacgcggcggagggtagctgcagggtttggag 365 |||||||| || || || ||||| ||||| || || ||||| |||||| || |||||| Sbjct: 386 ttcgtgcacgatggcccagcgcatttctcccgtggaggaggatagctgtgtggcttggag 327 Query: 366 ttgaagatacttgggaggcctac 388 | |||||| || ||||||||||| Sbjct: 326 tcgaagatgctggggaggcctac 304
>gb|DQ207660.1| Zea mays cultivar B73 IDP138 marker Length = 273 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 246 ttgtagcactctaggctgcagagggggagcttcagcttcgagtccctgtaccggtacgcg 305 |||||||||| ||||||||||||||||| |||||||| |||| ||||||| ||| || Sbjct: 169 ttgtagcacttgaggctgcagagggggaggttcagcttggagtgcctgtacttgtaatcg 228 Query: 306 ttcgtgcaagacggtccggcgcacttctc 334 |||||||| || || || ||||| ||||| Sbjct: 229 ttcgtgcacgatggcccagcgcatttctc 257
>ref|XM_470049.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1875 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 238 ggacagctttgtagcactctaggctgcagagggggagcttcagcttcgagtccctgtac 296 ||||||| |||||||||| ||||||||||| || |||||| ||||||||||| |||| Sbjct: 1522 ggacagccttgtagcactgcaggctgcagagcggaagcttcgtcttcgagtcccggtac 1464
>gb|DQ207661.1| Zea mays cultivar inbred line Mo17 IDP138 marker Length = 351 Score = 54.0 bits (27), Expect = 6e-04 Identities = 46/51 (90%), Gaps = 1/51 (1%) Strand = Plus / Minus Query: 246 ttgtagcactctaggctgcagagggggagcttcagcttcgagtccctgtac 296 |||||||||| ||||||||||||||||| |||||||| |||| ||||||| Sbjct: 80 ttgtagcacttgaggctgcagagggggaggttcagctt-gagtgcctgtac 31
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 238 ggacagctttgtagcactctaggctgcagagggggagcttcagcttcgagtccctgtac 296 ||||||| |||||||||| ||||||||||| || |||||| ||||||||||| |||| Sbjct: 33684721 ggacagccttgtagcactgcaggctgcagagcggaagcttcgtcttcgagtcccggtac 33684779
>gb|AC137507.3| Oryza sativa chromosome 3 BAC OSJNBb0033J23 genomic sequence, complete sequence Length = 126862 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 238 ggacagctttgtagcactctaggctgcagagggggagcttcagcttcgagtccctgtac 296 ||||||| |||||||||| ||||||||||| || |||||| ||||||||||| |||| Sbjct: 56090 ggacagccttgtagcactgcaggctgcagagcggaagcttcgtcttcgagtcccggtac 56148
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 238 ggacagctttgtagcactctaggctgcagagggggagcttcagcttcgagtccctgtac 296 ||||||| |||||||||| ||||||||||| || |||||| ||||||||||| |||| Sbjct: 33775193 ggacagccttgtagcactgcaggctgcagagcggaagcttcgtcttcgagtcccggtac 33775251
>dbj|AK103214.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033122M20, full insert sequence Length = 2080 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 238 ggacagctttgtagcactctaggctgcagagggggagcttcagcttcgagtccctgtac 296 ||||||| |||||||||| ||||||||||| || |||||| ||||||||||| |||| Sbjct: 1689 ggacagccttgtagcactgcaggctgcagagcggaagcttcgtcttcgagtcccggtac 1631
>ref|NM_111546.2| Arabidopsis thaliana protein binding AT3G06660 mRNA, complete cds Length = 1686 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 537 agtattttccttatagcttcagcctcg 563 ||||||||||| ||||||||||||||| Sbjct: 1213 agtattttcctgatagcttcagcctcg 1187
>gb|AY117257.1| Arabidopsis thaliana unknown protein (At3g06660) mRNA, complete cds Length = 1315 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 537 agtattttccttatagcttcagcctcg 563 ||||||||||| ||||||||||||||| Sbjct: 941 agtattttcctgatagcttcagcctcg 915
>gb|AY034922.1| Arabidopsis thaliana unknown protein (At3g06660) mRNA, complete cds Length = 1699 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 537 agtattttccttatagcttcagcctcg 563 ||||||||||| ||||||||||||||| Sbjct: 1213 agtattttcctgatagcttcagcctcg 1187
>gb|AC023912.5|ATAC023912 Arabidopsis thaliana chromosome III BAC F3E22 genomic sequence, complete sequence Length = 63767 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 537 agtattttccttatagcttcagcct 561 ||||||||||| ||||||||||||| Sbjct: 62177 agtattttcctgatagcttcagcct 62201
>gb|AC036106.6|AC036106 Arabidopsis thaliana chromosome 3 BAC T8E24 genomic sequence, complete sequence Length = 51646 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 537 agtattttccttatagcttcagcct 561 ||||||||||| ||||||||||||| Sbjct: 16761 agtattttcctgatagcttcagcct 16785
>gb|AC151710.1| Pan troglodytes chromosome X clone PTB-084K12 map human ortholog q23, complete sequence Length = 174741 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 355 agggtttggagttgaagatacttgggaggcct 386 ||||||||||||| ||| ||||||||||||| Sbjct: 67624 agggtttggagttagagagacttgggaggcct 67593
>gb|AC127367.4| Mus musculus BAC clone RP23-19G15 from chromosome 9, complete sequence Length = 176541 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 ctttgtagcactctaggctg 263 |||||||||||||||||||| Sbjct: 32002 ctttgtagcactctaggctg 31983
>gb|CP000114.1| Streptococcus agalactiae A909, complete genome Length = 2127839 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 535 ccagtattttccttatagcttcagcctc 562 |||||||||||| || |||||||||||| Sbjct: 328257 ccagtattttccatacagcttcagcctc 328230
>gb|AF131216.2| Homo sapiens chromosome 8 map 8p23-p22 clone CTB-164D9, CTB-169o5, CTB-65D4, CTC-271o23, CTC-367J24, complete sequence; and clones CTC-493P15, CTB-91N18, partial sequence Length = 321261 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 549 atagcttcagcctcgctttcttta 572 |||||||||||||| ||||||||| Sbjct: 23902 atagcttcagcctcactttcttta 23879
>gb|AC122386.3| Mus musculus BAC clone RP24-72H18 from chromosome 7, complete sequence Length = 161949 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 gctatgtgtaactattttgtaact 122 ||||| |||||||||||||||||| Sbjct: 109564 gctatttgtaactattttgtaact 109541
>emb|AL357774.11| Human DNA sequence from clone RP11-473N15 on chromosome X Contains the 5' end of the PAK3 gene for p21 (CDKN1A)-activated kinase 3, complete sequence Length = 156498 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 355 agggtttggagttgaagatacttgggaggcct 386 ||||||||||||| ||| ||||||||||||| Sbjct: 153702 agggtttggagttagagagacttgggaggcct 153671
>gb|AE014205.1| Streptococcus agalactiae 2603V/R section 15 of 100 of the complete genome Length = 20094 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 535 ccagtattttccttatagcttcagcctc 562 |||||||||||| || |||||||||||| Sbjct: 15639 ccagtattttccatacagcttcagcctc 15612
>emb|AL766844.1|SAG766844 Streptococcus agalactiae NEM316 complete genome, segment 2 Length = 240050 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 535 ccagtattttccttatagcttcagcctc 562 |||||||||||| || |||||||||||| Sbjct: 177116 ccagtattttccatacagcttcagcctc 177089
>gb|AC100809.9| Homo sapiens chromosome 8, clone CTC-493P15, complete sequence Length = 184851 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 549 atagcttcagcctcgctttcttta 572 |||||||||||||| ||||||||| Sbjct: 48395 atagcttcagcctcactttcttta 48418
>gb|AC156031.2| Mus musculus BAC clone RP24-531B21 from 9, complete sequence Length = 169736 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 ctttgtagcactctaggctg 263 |||||||||||||||||||| Sbjct: 63944 ctttgtagcactctaggctg 63963
>emb|BX537613.1|HSM806370 Homo sapiens mRNA; cDNA DKFZp686E11117 (from clone DKFZp686E11117) Length = 4957 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 355 agggtttggagttgaagatacttgggaggcct 386 ||||||||||||| ||| ||||||||||||| Sbjct: 4338 agggtttggagttagagagacttgggaggcct 4307 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,948,412 Number of Sequences: 3902068 Number of extensions: 3948412 Number of successful extensions: 62104 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61955 Number of HSP's gapped (non-prelim): 149 length of query: 616 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 593 effective length of database: 17,143,297,704 effective search space: 10165975538472 effective search space used: 10165975538472 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)