ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags6k07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Plus Query: 600 tcttagggcgctttttgacatagttctgccgcagaggtctagggatctggaaggaaaatt 659 |||||||||||||||||||||||| ||| |||||||| ||||| |||||||| ||||||| Sbjct: 18860974 tcttagggcgctttttgacatagtcctgtcgcagaggcctaggaatctggaatgaaaatt 18861033 Query: 660 gagctaatgttacaccctgtgcaccata 687 ||| ||||||||||||||||||| |||| Sbjct: 18861034 gagttaatgttacaccctgtgcaacata 18861061 Score = 40.1 bits (20), Expect = 9.5 Identities = 44/52 (84%) Strand = Plus / Plus Query: 360 ctccattctgagcaccctctaacttggtttccggcccatcagacacatggtt 411 ||||||| |||| | ||||||||||||||| || ||||||| |||||||| Sbjct: 18859615 ctccattttgagtatcctctaacttggtttttggttcatcagaaacatggtt 18859666
>dbj|AK107282.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-B01, full insert sequence Length = 1312 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 600 tcttagggcgctttttgacatagttctgccgcagaggtctagggatctggaaggaaaatt 659 |||||||||||||||||||||||| ||| |||||||| ||||| |||||||| ||||||| Sbjct: 1160 tcttagggcgctttttgacatagtcctgtcgcagaggcctaggaatctggaatgaaaatt 1101 Query: 660 gagctaatgttacaccctgtgcaccata 687 ||| ||||||||||||||||||| |||| Sbjct: 1100 gagttaatgttacaccctgtgcaacata 1073
>dbj|AK101317.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034D09, full insert sequence Length = 1751 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 600 tcttagggcgctttttgacatagttctgccgcagaggtctagggatctggaaggaaaatt 659 |||||||||||||||||||||||| ||| |||||||| ||||| |||||||| ||||||| Sbjct: 1082 tcttagggcgctttttgacatagtcctgtcgcagaggcctaggaatctggaatgaaaatt 1023 Query: 660 gagctaatgttacaccctgtgcaccata 687 ||| ||||||||||||||||||| |||| Sbjct: 1022 gagttaatgttacaccctgtgcaacata 995 Score = 40.1 bits (20), Expect = 9.5 Identities = 44/52 (84%) Strand = Plus / Minus Query: 360 ctccattctgagcaccctctaacttggtttccggcccatcagacacatggtt 411 ||||||| |||| | ||||||||||||||| || ||||||| |||||||| Sbjct: 1346 ctccattttgagtatcctctaacttggtttttggttcatcagaaacatggtt 1295
>gb|AY029560.1| Zea mays putative methyl-binding domain protein MBD108 mRNA, complete cds Length = 1431 Score = 103 bits (52), Expect = 8e-19 Identities = 76/84 (90%) Strand = Plus / Minus Query: 610 ctttttgacatagttctgccgcagaggtctagggatctggaaggaaaattgagctaatgt 669 |||||||||||||| |||||||| ||||||||| |||||||| ||||| |||||||| || Sbjct: 776 ctttttgacatagtcctgccgcaaaggtctaggtatctggaacgaaaactgagctaaagt 717 Query: 670 tacaccctgtgcaccatactctgg 693 ||||||||||||| ||| |||||| Sbjct: 716 tacaccctgtgcaacatgctctgg 693
>gb|AY111995.1| Zea mays CL7274_1 mRNA sequence Length = 766 Score = 99.6 bits (50), Expect = 1e-17 Identities = 71/78 (91%) Strand = Plus / Minus Query: 616 gacatagttctgccgcagaggtctagggatctggaaggaaaattgagctaatgttacacc 675 |||||||| |||||||||||||||||| |||||||| ||||| |||||||| |||||||| Sbjct: 99 gacatagtcctgccgcagaggtctaggtatctggaacgaaaactgagctaaagttacacc 40 Query: 676 ctgtgcaccatactctgg 693 ||||||| ||| |||||| Sbjct: 39 ctgtgcaacatgctctgg 22
>gb|AY029561.1| Zea mays putative methyl-binding domain protein MBD111 mRNA, complete cds Length = 1452 Score = 97.6 bits (49), Expect = 5e-17 Identities = 73/81 (90%) Strand = Plus / Minus Query: 610 ctttttgacatagttctgccgcagaggtctagggatctggaaggaaaattgagctaatgt 669 |||||| ||||||| |||||| ||||||||||| |||||||| ||||| |||||||| || Sbjct: 744 ctttttcacatagtcctgccgtagaggtctaggtatctggaacgaaaactgagctaaagt 685 Query: 670 tacaccctgtgcaccatactc 690 ||||||||| ||||||||||| Sbjct: 684 tacaccctgagcaccatactc 664
>gb|AY108523.1| Zea mays PCO097059 mRNA sequence Length = 873 Score = 97.6 bits (49), Expect = 5e-17 Identities = 73/81 (90%) Strand = Plus / Minus Query: 610 ctttttgacatagttctgccgcagaggtctagggatctggaaggaaaattgagctaatgt 669 |||||| ||||||| |||||| ||||||||||| |||||||| ||||| |||||||| || Sbjct: 125 ctttttcacatagtcctgccgtagaggtctaggtatctggaacgaaaactgagctaaagt 66 Query: 670 tacaccctgtgcaccatactc 690 ||||||||| ||||||||||| Sbjct: 65 tacaccctgagcaccatactc 45
>gb|AC159994.7| Mus musculus chromosome 7, clone RP23-368F23, complete sequence Length = 181238 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 316 ctgggtacgtcagactgcagctttt 340 |||||| |||||||||||||||||| Sbjct: 66143 ctgggtgcgtcagactgcagctttt 66167
>ref|XM_949746.1| Theileria annulata strain Ankara hypothetical protein (TA05330) partial mRNA Length = 1578 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 tcggattttttgtcgacctca 196 ||||||||||||||||||||| Sbjct: 263 tcggattttttgtcgacctca 243
>gb|AC012391.10| Homo sapiens chromosome 10 clone RP11-162A23, complete sequence Length = 181948 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 316 ctgggtacgtcagactgcagctttt 340 |||||| |||||||||||||||||| Sbjct: 59461 ctgggtgcgtcagactgcagctttt 59485
>gb|L21974.1|ACSCSRC Avian sarcoma virus proviral c-src gene, complete cds, and env gene, untranslated region Length = 5188 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 cggcatgagaagctggttca 514 |||||||||||||||||||| Sbjct: 1658 cggcatgagaagctggttca 1677
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 633 gaggtctagggatctggaag 652 |||||||||||||||||||| Sbjct: 4398666 gaggtctagggatctggaag 4398647
>gb|AC165409.3| Mus musculus chromosome 18, clone RP23-90F15, complete sequence Length = 198735 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 tagagacgaggaaatcatcg 305 |||||||||||||||||||| Sbjct: 55051 tagagacgaggaaatcatcg 55070
>gb|AC147241.2| Mus musculus BAC clone RP23-417C21 from chromosome 12, complete sequence Length = 199956 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 ctcagagccttctgctttcc 452 |||||||||||||||||||| Sbjct: 110452 ctcagagccttctgctttcc 110471
>ref|XM_386435.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG06259.1) partial mRNA Length = 2193 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 ctgtcccaaatcgtcggatttttt 186 ||||||||||||||||| |||||| Sbjct: 1380 ctgtcccaaatcgtcggttttttt 1357
>gb|AC127493.4| Homo sapiens chromosome 18, clone RP11-539C8, complete sequence Length = 105459 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 664 taatgttacaccctgtgcac 683 |||||||||||||||||||| Sbjct: 21054 taatgttacaccctgtgcac 21035
>emb|AL136366.24| Human DNA sequence from clone RP11-413C16 on chromosome 9p22.3-23 Contains the 5' end of the NFIB gene for nuclear factor I/B (NFIB2, NRFIB3, NFI-RED), the 5' end of a novel gene and 2 CpG islands, complete sequence Length = 120282 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 caaggtctcctacataagca 93 |||||||||||||||||||| Sbjct: 62028 caaggtctcctacataagca 62047
>gb|AC124733.4| Mus musculus BAC clone RP23-306C18 from 12, complete sequence Length = 206837 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 ctcagagccttctgctttcc 452 |||||||||||||||||||| Sbjct: 175301 ctcagagccttctgctttcc 175282
>ref|XM_774763.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_170_138692_134292) partial mRNA Length = 4401 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 465 gcttcacatctgccgatcca 484 |||||||||||||||||||| Sbjct: 2350 gcttcacatctgccgatcca 2369
>gb|AC103933.7| Mus musculus chromosome 18, clone RP23-317G9, complete sequence Length = 198626 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 tagagacgaggaaatcatcg 305 |||||||||||||||||||| Sbjct: 18062 tagagacgaggaaatcatcg 18081
>emb|BX255925.17| Human DNA sequence from clone RP13-122B23 on chromosome 9, complete sequence Length = 100719 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 cctggctcagagccttctgc 447 |||||||||||||||||||| Sbjct: 23191 cctggctcagagccttctgc 23172
>emb|AL158149.14| Human DNA sequence from clone RP11-208G24 on chromosome 9 Contains the GAS1 gene for growth arrest-specific 1, the 5' end of a novel gene and a CpG island, complete sequence Length = 102100 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 653 gaaaattgagctaatgttac 672 |||||||||||||||||||| Sbjct: 97646 gaaaattgagctaatgttac 97665
>emb|AL132868.24|HSA262P20 Human DNA sequence from clone RP11-262P20 on chromosome 4, complete sequence Length = 193444 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 547 aacttccactggttgaagag 566 |||||||||||||||||||| Sbjct: 143104 aacttccactggttgaagag 143085
>emb|X52822.1|MAVSCR M.auratus H-19 proviral sequence (LTR,v-3scr1,LTR) Length = 3775 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 cggcatgagaagctggttca 514 |||||||||||||||||||| Sbjct: 2193 cggcatgagaagctggttca 2212
>emb|X84074.1|RSVPP62V8 Rous sarcoma virus pp62v-src gene Length = 1638 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 cggcatgagaagctggttca 514 |||||||||||||||||||| Sbjct: 1012 cggcatgagaagctggttca 1031
>emb|X84073.1|RSVSRCHM Rous sarcoma virus srcHM gene Length = 1641 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 cggcatgagaagctggttca 514 |||||||||||||||||||| Sbjct: 1012 cggcatgagaagctggttca 1031
>emb|X68524.1|RSVSEQ Rous Sarcoma Virus (duck adapted) sequence of gag, pol, env and src genes Length = 9312 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 cggcatgagaagctggttca 514 |||||||||||||||||||| Sbjct: 8080 cggcatgagaagctggttca 8099
>emb|X51863.1|ASVPR225T Avian Sarcoma Virus PR2257T Length = 4503 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 cggcatgagaagctggttca 514 |||||||||||||||||||| Sbjct: 1658 cggcatgagaagctggttca 1677
>emb|X51861.1|RSVPRSRC Duck adapted Rous sarcoma virus (Pr-RSV-C) src gene and 3'-LTR Length = 2545 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 cggcatgagaagctggttca 514 |||||||||||||||||||| Sbjct: 1233 cggcatgagaagctggttca 1252
>emb|X15345.1|RERSVH19 Hamster H-19 proviral DNA (LTR- v-src -LTR) Length = 3123 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 cggcatgagaagctggttca 514 |||||||||||||||||||| Sbjct: 1782 cggcatgagaagctggttca 1801
>emb|V01197.1|RERSV6 Rous sarcoma virus genome, strain Prague C (Pr-C) Length = 9312 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 cggcatgagaagctggttca 514 |||||||||||||||||||| Sbjct: 8080 cggcatgagaagctggttca 8099
>emb|AL627271.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 7/20 Length = 233050 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 aaggccattacggcgtcgcg 243 |||||||||||||||||||| Sbjct: 158683 aaggccattacggcgtcgcg 158702
>emb|AL645843.14| Mouse DNA sequence from clone RP23-338K15 on chromosome 11 Contains a eukaryotic translation elongation factor 2 (Eef2) pseudogene, complete sequence Length = 141245 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 641 gggatctggaaggaaaattg 660 |||||||||||||||||||| Sbjct: 58952 gggatctggaaggaaaattg 58971
>dbj|AK128153.1| Homo sapiens cDNA FLJ46276 fis, clone TESTI4029676 Length = 2907 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 cctggctcagagccttctgc 447 |||||||||||||||||||| Sbjct: 3 cctggctcagagccttctgc 22
>gb|AC113551.3| Homo sapiens chromosome 18, clone RP11-208K1, complete sequence Length = 179281 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 664 taatgttacaccctgtgcac 683 |||||||||||||||||||| Sbjct: 50208 taatgttacaccctgtgcac 50227
>gb|J02342.1|ALRCG Rous sarcoma virus - Prague C, complete genome Length = 9625 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 cggcatgagaagctggttca 514 |||||||||||||||||||| Sbjct: 8313 cggcatgagaagctggttca 8332
>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome Length = 3544738 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 atatatgatccgaaagggttcgac 128 |||||||||||| ||||||||||| Sbjct: 749694 atatatgatccggaagggttcgac 749671
>gb|AF033808.1|AF033808 Rous sarcoma virus, complete genome Length = 9392 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 cggcatgagaagctggttca 514 |||||||||||||||||||| Sbjct: 8080 cggcatgagaagctggttca 8099
>gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G08, from Chromosome 3, complete sequence Length = 122052 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 633 gaggtctagggatctggaag 652 |||||||||||||||||||| Sbjct: 27831 gaggtctagggatctggaag 27850
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 633 gaggtctagggatctggaag 652 |||||||||||||||||||| Sbjct: 4398781 gaggtctagggatctggaag 4398762
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 648 ggaaggaaaattgagctaat 667 |||||||||||||||||||| Sbjct: 36823059 ggaaggaaaattgagctaat 36823040
>emb|V00402.1|GGCSRC Gallus gallus gene c-src producing protein pp60-c-src. This gene is homologous to the rous sarcoma virus gene v-src Length = 1759 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 cggcatgagaagctggttca 514 |||||||||||||||||||| Sbjct: 1063 cggcatgagaagctggttca 1082
>gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0042J17, complete sequence Length = 171442 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 633 gaggtctagggatctggaag 652 |||||||||||||||||||| Sbjct: 3958 gaggtctagggatctggaag 3939
>gb|AC118137.3| Homo sapiens BAC clone RP11-427I22 from 4, complete sequence Length = 43619 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 68 gcatcacaaggtctcctacataag 91 |||||||| ||||||||||||||| Sbjct: 5514 gcatcacagggtctcctacataag 5537
>gb|AC105448.5| Homo sapiens BAC clone RP11-1197E19 from 4, complete sequence Length = 135594 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 547 aacttccactggttgaagag 566 |||||||||||||||||||| Sbjct: 117791 aacttccactggttgaagag 117810
>dbj|AP003442.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1096A10 Length = 150976 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 648 ggaaggaaaattgagctaat 667 |||||||||||||||||||| Sbjct: 38637 ggaaggaaaattgagctaat 38618
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 aaggccattacggcgtcgcg 243 |||||||||||||||||||| Sbjct: 1617270 aaggccattacggcgtcgcg 1617289
>gb|AC135335.3| Homo sapiens chromosome 18, clone RP13-1026H1, complete sequence Length = 155498 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 664 taatgttacaccctgtgcac 683 |||||||||||||||||||| Sbjct: 100896 taatgttacaccctgtgcac 100915
>emb|V01169.1|REASV5 Avian sarcoma virus src gene and part of the env gene Length = 3107 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 cggcatgagaagctggttca 514 |||||||||||||||||||| Sbjct: 2074 cggcatgagaagctggttca 2093
>emb|X14718.1|RERSVSRC Rous sarcome virus Pra src gene (pp60) Length = 1653 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 cggcatgagaagctggttca 514 |||||||||||||||||||| Sbjct: 1027 cggcatgagaagctggttca 1046
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 aaggccattacggcgtcgcg 243 |||||||||||||||||||| Sbjct: 1249448 aaggccattacggcgtcgcg 1249429
>gb|L29199.1|ALRDA2 Rous sarcoma virus (Schmidt-Ruppin A) env-src-3'LTR Length = 3256 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 cggcatgagaagctggttca 514 |||||||||||||||||||| Sbjct: 2074 cggcatgagaagctggttca 2093
>emb|AL161851.4|CNS01RHM Human chromosome 14 DNA sequence BAC R-1078I14 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 187732 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 546 taacttccactggttgaaga 565 |||||||||||||||||||| Sbjct: 63366 taacttccactggttgaaga 63347
>gb|AC115692.6| Mus musculus chromosome 18, clone RP23-463G11, complete sequence Length = 227631 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 tagagacgaggaaatcatcg 305 |||||||||||||||||||| Sbjct: 31545 tagagacgaggaaatcatcg 31526
>gb|AF052428.1| Rous sarcoma virus strain Schmidt-Ruppin B, complete genome Length = 9396 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 cggcatgagaagctggttca 514 |||||||||||||||||||| Sbjct: 8278 cggcatgagaagctggttca 8297
>emb|Z68276.1|HSL190B4 Human DNA sequence from clone LA04NC01-190B4 on chromosome 4, complete sequence Length = 29748 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 547 aacttccactggttgaagag 566 |||||||||||||||||||| Sbjct: 7917 aacttccactggttgaagag 7898
>gb|M21526.1|ALRSRCAC Rous sarcoma virus defective mutant PR2257 src gene encoding p66-src protein, complete cds Length = 4413 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 cggcatgagaagctggttca 514 |||||||||||||||||||| Sbjct: 1658 cggcatgagaagctggttca 1677
>gb|M84475.1|ALRPP60A Rous sarcoma virus phosphoprotein p60 (src) gene, complete cds and reverse transcriptase (pol) gene, 3' end Length = 2241 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 cggcatgagaagctggttca 514 |||||||||||||||||||| Sbjct: 1231 cggcatgagaagctggttca 1250
>gb|M11753.1|ALRGSRCA Rous sarcoma virus src gene, complete cds Length = 1629 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 cggcatgagaagctggttca 514 |||||||||||||||||||| Sbjct: 982 cggcatgagaagctggttca 1001 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,912,704 Number of Sequences: 3902068 Number of extensions: 4912704 Number of successful extensions: 82856 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82630 Number of HSP's gapped (non-prelim): 226 length of query: 693 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 670 effective length of database: 17,143,297,704 effective search space: 11486009461680 effective search space used: 11486009461680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
