>COXX_RICPR (Q9ZDI2) Protoheme IX farnesyltransferase (EC 2.5.1.-) (Heme O|
           synthase)
          Length = 310

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
 Frame = -3

Query: 479 VHPNTISVSTEVISIGSLTVASRQGKWSFQKDEDMELLFSSTG--------FQPDNRIHY 324
           +HP    ++   I++G    A   G  +   D D+++L   T          +PD  + +
Sbjct: 50  IHPLIAGIAVICIALG----AGSAGAMNMWYDRDIDILMKRTQNRPIVRGVIEPDEALSF 105

Query: 323 GGCNTVTAVLRGGFCLFFLSAIMLLVSYEVGLCIY 219
           G      AV     C+  L++ +LL +    +CIY
Sbjct: 106 GLITGFFAVFFMALCVNILASFLLLFTIFYYICIY 140

>NAGPA_MOUSE (Q8BJ48) N-acetylglucosamine-1-phosphodiester|
           alpha-N-acetylglucosaminidase precursor (EC 3.1.4.45)
           (Phosphodiester alpha-GlcNAcase) (Mannose
           6-phosphate-uncovering enzyme)
          Length = 517

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = +2

Query: 302 QSPC-CSHHSVCDYQAGNLWKRKAAPCLHPSGTT 400
           Q PC C H   CD Q GN    +   CL P+  T
Sbjct: 404 QRPCQCEHQCSCDPQTGNCSISQVRQCLQPTEAT 437

>HPS4_HUMAN (Q9NQG7) Hermansky-Pudlak syndrome 4 protein (Light-ear protein|
           homolog)
          Length = 708

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +1

Query: 178 LFIPIPGGRAGYLP*MHRPTS*LTRSIIADRKKRQKPPRSTAVTVLQPP 324
           L +P+P GRA Y             S+ A       PP  TA++ L+PP
Sbjct: 390 LHVPVPDGRAPYCK----------ASLSASSSLEPTPPEDTAISSLRPP 428

>ERBB2_CANFA (O18735) Receptor tyrosine-protein kinase erbB-2 precursor (EC|
            2.7.10.1) (p185erbB2) (C-erbB-2)
          Length = 1259

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 219  VDAQAHLVAHQEHYC*QKKETEAATQHRSHRVAAT 323
            VDA+ +LV  Q  +C +       T HR HR ++T
Sbjct: 1017 VDAEEYLVPQQGFFCPEPTPGAGGTAHRRHRSSST 1051


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,085,150
Number of Sequences: 219361
Number of extensions: 1839025
Number of successful extensions: 4641
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4640
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)