Clone Information

BLAST Search Result

Clone Name	rbags6k05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_483795.1\| Oryza sativa (japonica cultivar-group), mRNA	123	7e-25
2	ref\|XM_507343.1\| PREDICTED Oryza sativa (japonica cultivar-group...	123	7e-25
3	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	123	7e-25
4	dbj\|AP005544.3\| Oryza sativa (japonica cultivar-group) genomic D...	123	7e-25
5	dbj\|AP004587.3\| Oryza sativa (japonica cultivar-group) genomic D...	123	7e-25
6	dbj\|AK120773.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	123	7e-25
7	dbj\|AK099629.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	123	7e-25
8	gb\|AY104520.1\| Zea mays PCO096740 mRNA sequence	105	2e-19
9	ref\|XM_483796.1\| Oryza sativa (japonica cultivar-group), mRNA	54	6e-04
10	dbj\|AK069733.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	54	6e-04
11	emb\|AL359894.9\| Human DNA sequence from clone RP11-379C1 on chro...	44	0.54
12	emb\|AL078643.5\|HSJ988G17 Human DNA sequence from clone RP5-988G1...	42	2.1
13	emb\|AL031285.1\|HS58A9 Human DNA sequence from clone RP1-58A9 on ...	42	2.1
14	gb\|AC108687.3\| Homo sapiens 3 BAC RP11-725C17 (Roswell Park Canc...	42	2.1
15	gb\|AC015766.9\| Homo sapiens chromosome 18, clone RP11-1P16, comp...	42	2.1
16	gb\|AE017350.1\| Cryptococcus neoformans var. neoformans JEC21 chr...	40	8.5
17	emb\|CR956424.18\| Pig DNA sequence from clone PigE-234J24 on chro...	40	8.5
18	gb\|DQ084724.1\| Oryctolagus cuniculus clone R428 immunoglobulin h...	40	8.5
19	emb\|AL592114.13\| Human DNA sequence from clone RP11-203F10 on ch...	40	8.5
20	gb\|AY766183.1\| Vaccinia virus strain ACAM1000, partial sequence	40	8.5
21	gb\|AC079044.21\| Mus musculus strain C57BL/6J chromosome 16 clone...	40	8.5
22	gb\|AC006287.1\|AC006287 Homo sapiens, clone hRPK.22_A_1, complete...	40	8.5
23	emb\|CT025557.11\| Mouse DNA sequence from clone RP23-356F21 on ch...	40	8.5
24	dbj\|AP001132.4\| Homo sapiens genomic DNA, chromosome 11q clone:R...	40	8.5
25	gb\|AC087802.13\| Mus musculus strain C57BL/6J chromosome 16 clone...	40	8.5

>ref|XM_483795.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2439

 Score =  123 bits (62), Expect = 7e-25
 Identities = 212/260 (81%), Gaps = 9/260 (3%)
 Strand = Plus / Minus

                                                                        
Query: 211  tacttgccgtagatgcacaggcccacctcgtagctcaccaggagcattattgctgacaga 270
            |||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| |  
Sbjct: 2053 tacttgccatagatgcacatgcccacctcgtagctcaccaagagcattattgctgaaaag 1994

                                                                        
Query: 271  aaaaagagacagaagccgccacgcagcaccgcagtcaccgtgttgcagccaccatagtgt 330
            || ||||| |||||||| |||||||| || || || |  |||||||||   ||| |||||
Sbjct: 1993 aagaagaggcagaagccaccacgcagtactgcggttattgtgttgcag---ccaaagtgt 1937

                                                                        
Query: 331  atgcgattatcaggctggaaacctgtggaagagaaaagcagctccatgtcttcatccttc 390
            |  ||  |||||||||  ||||||   |  ||||| |||||||||||| |||||||||||
Sbjct: 1936 acacgggtatcaggctcaaaacct---gccgagaagagcagctccatgccttcatccttc 1880

                                                                        
Query: 391  tggaacgaccacttaccttgtcgagaagcaacagttaagcttcctatgctgattacttca 450
            |  |  ||||||||| |||   ||||| ||  |||||| |||||||||||||||||||||
Sbjct: 1879 tcaagggaccacttatctt---gagaatcaggagttaaacttcctatgctgattacttca 1823

                                
Query: 451  gtagacacactgatggtgtt 470
            | ||| |||| ||| |||||
Sbjct: 1822 gcagagacacggatagtgtt 1803



 Score =  109 bits (55), Expect = 1e-20
 Identities = 100/115 (86%)
 Strand = Plus / Minus

                                                                        
Query: 506  ctgctgcaaaagcagggggagccgagattgaatccagcatctttacaaaacgctttccca 565
            |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || |
Sbjct: 1746 ctgctgcaaaagcagggggagcagagattgaatccagtatctttacaaaacgcttcccga 1687

                                                                   
Query: 566  tggacccattcttagcccgagaatctggtaaaacaacacaatttaactgactacc 620
            |    | | |||| | | | |||||||||||||||||| ||||||||||||||||
Sbjct: 1686 tcagactactcttggtctgggaatctggtaaaacaacataatttaactgactacc 1632

to top

>ref|XM_507343.1| PREDICTED Oryza sativa (japonica cultivar-group), P0604E01.48-1 mRNA
          Length = 2626

 Score =  123 bits (62), Expect = 7e-25
 Identities = 212/260 (81%), Gaps = 9/260 (3%)
 Strand = Plus / Minus

                                                                        
Query: 211  tacttgccgtagatgcacaggcccacctcgtagctcaccaggagcattattgctgacaga 270
            |||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| |  
Sbjct: 2053 tacttgccatagatgcacatgcccacctcgtagctcaccaagagcattattgctgaaaag 1994

                                                                        
Query: 271  aaaaagagacagaagccgccacgcagcaccgcagtcaccgtgttgcagccaccatagtgt 330
            || ||||| |||||||| |||||||| || || || |  |||||||||   ||| |||||
Sbjct: 1993 aagaagaggcagaagccaccacgcagtactgcggttattgtgttgcag---ccaaagtgt 1937

                                                                        
Query: 331  atgcgattatcaggctggaaacctgtggaagagaaaagcagctccatgtcttcatccttc 390
            |  ||  |||||||||  ||||||   |  ||||| |||||||||||| |||||||||||
Sbjct: 1936 acacgggtatcaggctcaaaacct---gccgagaagagcagctccatgccttcatccttc 1880

                                                                        
Query: 391  tggaacgaccacttaccttgtcgagaagcaacagttaagcttcctatgctgattacttca 450
            |  |  ||||||||| |||   ||||| ||  |||||| |||||||||||||||||||||
Sbjct: 1879 tcaagggaccacttatctt---gagaatcaggagttaaacttcctatgctgattacttca 1823

                                
Query: 451  gtagacacactgatggtgtt 470
            | ||| |||| ||| |||||
Sbjct: 1822 gcagagacacggatagtgtt 1803



 Score =  109 bits (55), Expect = 1e-20
 Identities = 100/115 (86%)
 Strand = Plus / Minus

                                                                        
Query: 506  ctgctgcaaaagcagggggagccgagattgaatccagcatctttacaaaacgctttccca 565
            |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || |
Sbjct: 1746 ctgctgcaaaagcagggggagcagagattgaatccagtatctttacaaaacgcttcccga 1687

                                                                   
Query: 566  tggacccattcttagcccgagaatctggtaaaacaacacaatttaactgactacc 620
            |    | | |||| | | | |||||||||||||||||| ||||||||||||||||
Sbjct: 1686 tcagactactcttggtctgggaatctggtaaaacaacataatttaactgactacc 1632

to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  123 bits (62), Expect = 7e-25
 Identities = 212/260 (81%), Gaps = 9/260 (3%)
 Strand = Plus / Plus

                                                                            
Query: 211      tacttgccgtagatgcacaggcccacctcgtagctcaccaggagcattattgctgacaga 270
                |||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| |  
Sbjct: 28138207 tacttgccatagatgcacatgcccacctcgtagctcaccaagagcattattgctgaaaag 28138266

                                                                            
Query: 271      aaaaagagacagaagccgccacgcagcaccgcagtcaccgtgttgcagccaccatagtgt 330
                || ||||| |||||||| |||||||| || || || |  |||||||||   ||| |||||
Sbjct: 28138267 aagaagaggcagaagccaccacgcagtactgcggttattgtgttgcag---ccaaagtgt 28138323

                                                                            
Query: 331      atgcgattatcaggctggaaacctgtggaagagaaaagcagctccatgtcttcatccttc 390
                |  ||  |||||||||  ||||||   |  ||||| |||||||||||| |||||||||||
Sbjct: 28138324 acacgggtatcaggctcaaaacct---gccgagaagagcagctccatgccttcatccttc 28138380

                                                                            
Query: 391      tggaacgaccacttaccttgtcgagaagcaacagttaagcttcctatgctgattacttca 450
                |  |  ||||||||| |||   ||||| ||  |||||| |||||||||||||||||||||
Sbjct: 28138381 tcaagggaccacttatctt---gagaatcaggagttaaacttcctatgctgattacttca 28138437

                                    
Query: 451      gtagacacactgatggtgtt 470
                | ||| |||| ||| |||||
Sbjct: 28138438 gcagagacacggatagtgtt 28138457



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 53/55 (96%)
 Strand = Plus / Plus

                                                                       
Query: 506      ctgctgcaaaagcagggggagccgagattgaatccagcatctttacaaaacgctt 560
                |||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 28138514 ctgctgcaaaagcagggggagcagagattgaatccagtatctttacaaaacgctt 28138568



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                               
Query: 590      ctggtaaaacaacacaatttaactgactacc 620
                |||||||||||||| ||||||||||||||||
Sbjct: 28138928 ctggtaaaacaacataatttaactgactacc 28138958

to top

>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0604E01
          Length = 159049

 Score =  123 bits (62), Expect = 7e-25
 Identities = 212/260 (81%), Gaps = 9/260 (3%)
 Strand = Plus / Plus

                                                                          
Query: 211    tacttgccgtagatgcacaggcccacctcgtagctcaccaggagcattattgctgacaga 270
              |||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| |  
Sbjct: 135702 tacttgccatagatgcacatgcccacctcgtagctcaccaagagcattattgctgaaaag 135761

                                                                          
Query: 271    aaaaagagacagaagccgccacgcagcaccgcagtcaccgtgttgcagccaccatagtgt 330
              || ||||| |||||||| |||||||| || || || |  |||||||||   ||| |||||
Sbjct: 135762 aagaagaggcagaagccaccacgcagtactgcggttattgtgttgcag---ccaaagtgt 135818

                                                                          
Query: 331    atgcgattatcaggctggaaacctgtggaagagaaaagcagctccatgtcttcatccttc 390
              |  ||  |||||||||  ||||||   |  ||||| |||||||||||| |||||||||||
Sbjct: 135819 acacgggtatcaggctcaaaacct---gccgagaagagcagctccatgccttcatccttc 135875

                                                                          
Query: 391    tggaacgaccacttaccttgtcgagaagcaacagttaagcttcctatgctgattacttca 450
              |  |  ||||||||| |||   ||||| ||  |||||| |||||||||||||||||||||
Sbjct: 135876 tcaagggaccacttatctt---gagaatcaggagttaaacttcctatgctgattacttca 135932

                                  
Query: 451    gtagacacactgatggtgtt 470
              | ||| |||| ||| |||||
Sbjct: 135933 gcagagacacggatagtgtt 135952



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 53/55 (96%)
 Strand = Plus / Plus

                                                                     
Query: 506    ctgctgcaaaagcagggggagccgagattgaatccagcatctttacaaaacgctt 560
              |||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 136009 ctgctgcaaaagcagggggagcagagattgaatccagtatctttacaaaacgctt 136063



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                             
Query: 590    ctggtaaaacaacacaatttaactgactacc 620
              |||||||||||||| ||||||||||||||||
Sbjct: 136423 ctggtaaaacaacataatttaactgactacc 136453

to top

>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0543D10
          Length = 134866

 Score =  123 bits (62), Expect = 7e-25
 Identities = 212/260 (81%), Gaps = 9/260 (3%)
 Strand = Plus / Plus

                                                                         
Query: 211   tacttgccgtagatgcacaggcccacctcgtagctcaccaggagcattattgctgacaga 270
             |||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| |  
Sbjct: 21680 tacttgccatagatgcacatgcccacctcgtagctcaccaagagcattattgctgaaaag 21739

                                                                         
Query: 271   aaaaagagacagaagccgccacgcagcaccgcagtcaccgtgttgcagccaccatagtgt 330
             || ||||| |||||||| |||||||| || || || |  |||||||||   ||| |||||
Sbjct: 21740 aagaagaggcagaagccaccacgcagtactgcggttattgtgttgcag---ccaaagtgt 21796

                                                                         
Query: 331   atgcgattatcaggctggaaacctgtggaagagaaaagcagctccatgtcttcatccttc 390
             |  ||  |||||||||  ||||||   |  ||||| |||||||||||| |||||||||||
Sbjct: 21797 acacgggtatcaggctcaaaacct---gccgagaagagcagctccatgccttcatccttc 21853

                                                                         
Query: 391   tggaacgaccacttaccttgtcgagaagcaacagttaagcttcctatgctgattacttca 450
             |  |  ||||||||| |||   ||||| ||  |||||| |||||||||||||||||||||
Sbjct: 21854 tcaagggaccacttatctt---gagaatcaggagttaaacttcctatgctgattacttca 21910

                                 
Query: 451   gtagacacactgatggtgtt 470
             | ||| |||| ||| |||||
Sbjct: 21911 gcagagacacggatagtgtt 21930



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 53/55 (96%)
 Strand = Plus / Plus

                                                                    
Query: 506   ctgctgcaaaagcagggggagccgagattgaatccagcatctttacaaaacgctt 560
             |||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 21987 ctgctgcaaaagcagggggagcagagattgaatccagtatctttacaaaacgctt 22041



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                            
Query: 590   ctggtaaaacaacacaatttaactgactacc 620
             |||||||||||||| ||||||||||||||||
Sbjct: 22401 ctggtaaaacaacataatttaactgactacc 22431

to top

>dbj|AK120773.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008J18, full
            insert sequence
          Length = 2626

 Score =  123 bits (62), Expect = 7e-25
 Identities = 212/260 (81%), Gaps = 9/260 (3%)
 Strand = Plus / Minus

                                                                        
Query: 211  tacttgccgtagatgcacaggcccacctcgtagctcaccaggagcattattgctgacaga 270
            |||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| |  
Sbjct: 2053 tacttgccatagatgcacatgcccacctcgtagctcaccaagagcattattgctgaaaag 1994

                                                                        
Query: 271  aaaaagagacagaagccgccacgcagcaccgcagtcaccgtgttgcagccaccatagtgt 330
            || ||||| |||||||| |||||||| || || || |  |||||||||   ||| |||||
Sbjct: 1993 aagaagaggcagaagccaccacgcagtactgcggttattgtgttgcag---ccaaagtgt 1937

                                                                        
Query: 331  atgcgattatcaggctggaaacctgtggaagagaaaagcagctccatgtcttcatccttc 390
            |  ||  |||||||||  ||||||   |  ||||| |||||||||||| |||||||||||
Sbjct: 1936 acacgggtatcaggctcaaaacct---gccgagaagagcagctccatgccttcatccttc 1880

                                                                        
Query: 391  tggaacgaccacttaccttgtcgagaagcaacagttaagcttcctatgctgattacttca 450
            |  |  ||||||||| |||   ||||| ||  |||||| |||||||||||||||||||||
Sbjct: 1879 tcaagggaccacttatctt---gagaatcaggagttaaacttcctatgctgattacttca 1823

                                
Query: 451  gtagacacactgatggtgtt 470
            | ||| |||| ||| |||||
Sbjct: 1822 gcagagacacggatagtgtt 1803



 Score =  109 bits (55), Expect = 1e-20
 Identities = 100/115 (86%)
 Strand = Plus / Minus

                                                                        
Query: 506  ctgctgcaaaagcagggggagccgagattgaatccagcatctttacaaaacgctttccca 565
            |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || |
Sbjct: 1746 ctgctgcaaaagcagggggagcagagattgaatccagtatctttacaaaacgcttcccga 1687

                                                                   
Query: 566  tggacccattcttagcccgagaatctggtaaaacaacacaatttaactgactacc 620
            |    | | |||| | | | |||||||||||||||||| ||||||||||||||||
Sbjct: 1686 tcagactactcttggtctgggaatctggtaaaacaacataatttaactgactacc 1632

to top

>dbj|AK099629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013057D07, full
            insert sequence
          Length = 2439

 Score =  123 bits (62), Expect = 7e-25
 Identities = 212/260 (81%), Gaps = 9/260 (3%)
 Strand = Plus / Minus

                                                                        
Query: 211  tacttgccgtagatgcacaggcccacctcgtagctcaccaggagcattattgctgacaga 270
            |||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| |  
Sbjct: 2053 tacttgccatagatgcacatgcccacctcgtagctcaccaagagcattattgctgaaaag 1994

                                                                        
Query: 271  aaaaagagacagaagccgccacgcagcaccgcagtcaccgtgttgcagccaccatagtgt 330
            || ||||| |||||||| |||||||| || || || |  |||||||||   ||| |||||
Sbjct: 1993 aagaagaggcagaagccaccacgcagtactgcggttattgtgttgcag---ccaaagtgt 1937

                                                                        
Query: 331  atgcgattatcaggctggaaacctgtggaagagaaaagcagctccatgtcttcatccttc 390
            |  ||  |||||||||  ||||||   |  ||||| |||||||||||| |||||||||||
Sbjct: 1936 acacgggtatcaggctcaaaacct---gccgagaagagcagctccatgccttcatccttc 1880

                                                                        
Query: 391  tggaacgaccacttaccttgtcgagaagcaacagttaagcttcctatgctgattacttca 450
            |  |  ||||||||| |||   ||||| ||  |||||| |||||||||||||||||||||
Sbjct: 1879 tcaagggaccacttatctt---gagaatcaggagttaaacttcctatgctgattacttca 1823

                                
Query: 451  gtagacacactgatggtgtt 470
            | ||| |||| ||| |||||
Sbjct: 1822 gcagagacacggatagtgtt 1803



 Score =  109 bits (55), Expect = 1e-20
 Identities = 100/115 (86%)
 Strand = Plus / Minus

                                                                        
Query: 506  ctgctgcaaaagcagggggagccgagattgaatccagcatctttacaaaacgctttccca 565
            |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || |
Sbjct: 1746 ctgctgcaaaagcagggggagcagagattgaatccagtatctttacaaaacgcttcccga 1687

                                                                   
Query: 566  tggacccattcttagcccgagaatctggtaaaacaacacaatttaactgactacc 620
            |    | | |||| | | | |||||||||||||||||| ||||||||||||||||
Sbjct: 1686 tcagactactcttggtctgggaatctggtaaaacaacataatttaactgactacc 1632

to top

>gb|AY104520.1| Zea mays PCO096740 mRNA sequence
          Length = 674

 Score =  105 bits (53), Expect = 2e-19
 Identities = 107/125 (85%)
 Strand = Plus / Minus

                                                                       
Query: 498 tgggaactctgctgcaaaagcagggggagccgagattgaatccagcatctttacaaaacg 557
           |||||||||| |||||||||| |||||||| ||||| |||||||  ||| ||||||| | 
Sbjct: 129 tgggaactctcctgcaaaagctgggggagcagagatcgaatccaaaatccttacaaatcc 70

                                                                       
Query: 558 ctttcccatggacccattcttagcccgagaatctggtaaaacaacacaatttaactgact 617
           |||||| || |  | | |||||||| ||  ||||||||||||||||||||||||||||||
Sbjct: 69  ctttccaatagtactactcttagcctgaccatctggtaaaacaacacaatttaactgact 10

                
Query: 618 accag 622
           |||||
Sbjct: 9   accag 5



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 78/92 (84%), Gaps = 1/92 (1%)
 Strand = Plus / Minus

                                                                       
Query: 232 cccacctcgtagctcaccaggagcattattgctgacagaaaaaagagacagaag-ccgcc 290
           ||||||||||||||||| | ||||||||||||||| |  || || || |||||| || ||
Sbjct: 408 cccacctcgtagctcactaagagcattattgctgaaacgaagaaaaggcagaagcccacc 349

                                           
Query: 291 acgcagcaccgcagtcaccgtgttgcagccac 322
           |||||||||||| || |  |||||||||||||
Sbjct: 348 acgcagcaccgcggtaatggtgttgcagccac 317

to top

>ref|XM_483796.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1998

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 590  ctggtaaaacaacacaatttaactgactacc 620
            |||||||||||||| ||||||||||||||||
Sbjct: 1662 ctggtaaaacaacataatttaactgactacc 1632

to top

>dbj|AK069733.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030H12, full
            insert sequence
          Length = 1998

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 590  ctggtaaaacaacacaatttaactgactacc 620
            |||||||||||||| ||||||||||||||||
Sbjct: 1662 ctggtaaaacaacataatttaactgactacc 1632

to top

>emb|AL359894.9| Human DNA sequence from clone RP11-379C1 on chromosome 1 Contains the
             5' end of gene KIAA1365 and a CpG island, complete
             sequence
          Length = 161040

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 371   gctccatgtcttcatccttctggaac 396
             ||||||||||||| ||||||||||||
Sbjct: 68186 gctccatgtcttcttccttctggaac 68161

to top

>emb|AL078643.5|HSJ988G17 Human DNA sequence from clone RP5-988G17 on chromosome 20p13 Contains a
             novel gene, complete sequence
          Length = 86162

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 356   tggaagagaaaagcagctcca 376
             |||||||||||||||||||||
Sbjct: 21232 tggaagagaaaagcagctcca 21212

to top

>emb|AL031285.1|HS58A9 Human DNA sequence from clone RP1-58A9 on chromosome 1q24.1-24.3
             Contains STSs, GSSs, genomic marker D1S210 and a ca repeat
             polymorphism, complete sequence
          Length = 126347

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 350   aacctgtggaagagaaaagca 370
             |||||||||||||||||||||
Sbjct: 84901 aacctgtggaagagaaaagca 84921

to top

>gb|AC108687.3| Homo sapiens 3 BAC RP11-725C17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 128821

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 593   gtaaaacaacacaatttaact 613
             |||||||||||||||||||||
Sbjct: 94798 gtaaaacaacacaatttaact 94778

to top

>gb|AC015766.9| Homo sapiens chromosome 18, clone RP11-1P16, complete sequence
          Length = 153781

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 398   accacttaccttgtcgagaagcaacagtt 426
             |||||||||||| || |||||||||||||
Sbjct: 98730 accacttaccttctccagaagcaacagtt 98758

to top

>gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 10, complete
              sequence
          Length = 1085720

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 279    acagaagccgccacgcagcaccgcagtc 306
              ||||| |||||||||||||||| |||||
Sbjct: 616373 acagacgccgccacgcagcaccacagtc 616346

to top

>emb|CR956424.18| Pig DNA sequence from clone PigE-234J24 on chromosome 6, complete
             sequence
          Length = 118731

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   tcataataatctttttatac 187
             ||||||||||||||||||||
Sbjct: 59203 tcataataatctttttatac 59184

to top

>gb|DQ084724.1| Oryctolagus cuniculus clone R428 immunoglobulin heavy chain
           variable region (VH) gene, VH-y33 allele, partial cds
          Length = 309

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 496 cctgggaactctgctgcaaa 515
           ||||||||||||||||||||
Sbjct: 59  cctgggaactctgctgcaaa 78

to top

>emb|AL592114.13| Human DNA sequence from clone RP11-203F10 on chromosome 1 Contains the
             5' end of the REN gene for renin, the KISS1 gene for
             KiSS-1 metastasis-suppressor, a novel gene (FLJ42654), the
             3' end of the gene for phosphoinositol 3-phosphate-binding
             protein-3 (PEPP3) and  a novel gene, complete sequence
          Length = 189023

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 501   gaactctgctgcaaaagcag 520
             ||||||||||||||||||||
Sbjct: 12013 gaactctgctgcaaaagcag 11994

to top

>gb|AY766183.1| Vaccinia virus strain ACAM1000, partial sequence
          Length = 201404

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 587   aatctggtaaaacaacacaattta 610
             ||||||| ||||||||||||||||
Sbjct: 41736 aatctggaaaaacaacacaattta 41713

to top

>gb|AC079044.21| Mus musculus strain C57BL/6J chromosome 16 clone rp23-51l7, complete
              sequence
          Length = 228349

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 265    gacagaaaaaagagacagaa 284
              ||||||||||||||||||||
Sbjct: 118734 gacagaaaaaagagacagaa 118753

to top

>gb|AC006287.1|AC006287 Homo sapiens, clone hRPK.22_A_1, complete sequence
          Length = 176153

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   gacagaaaaaagagacagaa 284
             ||||||||||||||||||||
Sbjct: 47114 gacagaaaaaagagacagaa 47095

to top

>emb|CT025557.11| Mouse DNA sequence from clone RP23-356F21 on chromosome 13, complete
              sequence
          Length = 186496

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 346    tggaaacctgtggaagagaa 365
              ||||||||||||||||||||
Sbjct: 123577 tggaaacctgtggaagagaa 123558

to top

>dbj|AP001132.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-712D22, complete
              sequences
          Length = 170371

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 352    cctgtggaagagaaaagcag 371
              ||||||||||||||||||||
Sbjct: 114930 cctgtggaagagaaaagcag 114911

to top

>gb|AC087802.13| Mus musculus strain C57BL/6J chromosome 16 clone rp23-472f15, complete
              sequence
          Length = 187260

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 265    gacagaaaaaagagacagaa 284
              ||||||||||||||||||||
Sbjct: 104820 gacagaaaaaagagacagaa 104839


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,272,040
Number of Sequences: 3902068
Number of extensions: 5272040
Number of successful extensions: 102093
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101989
Number of HSP's gapped (non-prelim): 96
length of query: 622
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 599
effective length of database: 17,143,297,704
effective search space: 10268835324696
effective search space used: 10268835324696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result