ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags6k03 |
|---|---|
| Clone Library Name | barley_pub |
>PSDE_ARATH (Q9LT08) 26S proteasome non-ATPase regulatory subunit 14 (26S| proteasome regulatory subunit rpn11) Length = 308 Score = 238 bits (608), Expect = 1e-62 Identities = 120/145 (82%), Positives = 126/145 (86%) Frame = -3 Query: 705 PQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXK 526 PQT+MLGQEPRQTTSN+GHLNKPSIQALIHGLNRHYYSIAINYR K Sbjct: 164 PQTIMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKK 223 Query: 525 WTDGLIIKKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHL 346 WTDGL +++FDTHSKTNE+TVQEMLSLA KYNKAVQEEDEL PEKLAI NVGRQDAKKHL Sbjct: 224 WTDGLTLRRFDTHSKTNEQTVQEMLSLAAKYNKAVQEEDELSPEKLAIVNVGRQDAKKHL 283 Query: 345 EEHVSNLMSSNIVQTLGTMLDTVVF 271 EEHVSNLMSSNIVQTLGTMLDTVVF Sbjct: 284 EEHVSNLMSSNIVQTLGTMLDTVVF 308
>PSDE_MOUSE (O35593) 26S proteasome non-ATPase regulatory subunit 14 (26S| proteasome regulatory subunit rpn11) (MAD1) Length = 310 Score = 182 bits (462), Expect = 9e-46 Identities = 90/142 (63%), Positives = 104/142 (73%) Frame = -3 Query: 696 MMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXKWTD 517 M+LG EPRQTTSN+GHLNKPSIQALIHGLNRHYYSI INYR W + Sbjct: 168 MVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWME 227 Query: 516 GLIIKKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 337 GL ++ + H K NE V+EML LA YNKAV+EED++ PE+LAI NVG+QD K+HLEEH Sbjct: 228 GLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEH 287 Query: 336 VSNLMSSNIVQTLGTMLDTVVF 271 V LM+SNIVQ L MLDTVVF Sbjct: 288 VDVLMTSNIVQCLAAMLDTVVF 309
>PSDE_HUMAN (O00487) 26S proteasome non-ATPase regulatory subunit 14 (26S| proteasome regulatory subunit rpn11) (26S proteasome-associated PAD1 homolog 1) Length = 310 Score = 182 bits (462), Expect = 9e-46 Identities = 90/142 (63%), Positives = 104/142 (73%) Frame = -3 Query: 696 MMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXKWTD 517 M+LG EPRQTTSN+GHLNKPSIQALIHGLNRHYYSI INYR W + Sbjct: 168 MVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWME 227 Query: 516 GLIIKKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 337 GL ++ + H K NE V+EML LA YNKAV+EED++ PE+LAI NVG+QD K+HLEEH Sbjct: 228 GLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEH 287 Query: 336 VSNLMSSNIVQTLGTMLDTVVF 271 V LM+SNIVQ L MLDTVVF Sbjct: 288 VDVLMTSNIVQCLAAMLDTVVF 309
>PSDE_DROME (Q9V3H2) 26S proteasome non-ATPase regulatory subunit 14 (26S| proteasome regulatory subunit rpn11) (26S proteasome regulatory complex subunit p37B) (Yippee-interacting protein 5) Length = 308 Score = 177 bits (448), Expect = 4e-44 Identities = 83/145 (57%), Positives = 105/145 (72%) Frame = -3 Query: 705 PQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXK 526 P ++LGQEPRQTTSN+GHL KPS+QALIHGLNRHYYSI+INYR Sbjct: 163 PNMLVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKS 222 Query: 525 WTDGLIIKKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHL 346 W DGL + ++ H NE+TV EML LA YNK++++E+++ PE+LAI NVG+QD K+HL Sbjct: 223 WKDGLTLSDYNEHCSINEDTVAEMLDLAKNYNKSLEDEEKMTPEQLAIKNVGKQDPKRHL 282 Query: 345 EEHVSNLMSSNIVQTLGTMLDTVVF 271 EE V +M +NIVQ LG MLDT+VF Sbjct: 283 EEKVDKVMQNNIVQCLGAMLDTIVF 307
>RPN11_SCHPO (P41878) 26S proteasome regulatory subunit rpn11 (Protein pad1)| Length = 308 Score = 144 bits (362), Expect = 3e-34 Identities = 69/145 (47%), Positives = 94/145 (64%) Frame = -3 Query: 705 PQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXK 526 P T+M+GQEPRQTTSN+GH+NKPSIQALIHGL RHYYS+ INY+ Sbjct: 164 PSTLMMGQEPRQTTSNLGHINKPSIQALIHGLGRHYYSLRINYKKTELEEIMLLNLHKQP 223 Query: 525 WTDGLIIKKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHL 346 W GL+++ F++ ++ N ++ +M SL+ +Y + VQ E L PE+L I VG+QD KKHL Sbjct: 224 WAHGLLLENFNSAAEKNHASIDKMKSLSEQYTERVQNEVTLSPEQLRIQYVGKQDPKKHL 283 Query: 345 EEHVSNLMSSNIVQTLGTMLDTVVF 271 + V + +NI L MLD+V F Sbjct: 284 DAEVQKCIDNNISSMLACMLDSVAF 308
>PSDE_CAEEL (O76577) 26S proteasome non-ATPase regulatory subunit 14 (26S| proteasome regulatory subunit rpn11) Length = 312 Score = 139 bits (350), Expect = 8e-33 Identities = 67/142 (47%), Positives = 92/142 (64%) Frame = -3 Query: 705 PQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXK 526 PQ+M L QEPRQTTSN+GHL KPSIQALIHGLNRHYYSI I YR Sbjct: 167 PQSMALNQEPRQTTSNLGHLQKPSIQALIHGLNRHYYSIPIAYRTHDLEQKMLLNLNKLS 226 Query: 525 WTDGLIIKKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHL 346 W D + ++ + + N+E ++ ML LA Y KA+++E + ++LAI NVG+ D K+H+ Sbjct: 227 WMDAVSVENYSKCGEQNKEHLKAMLKLAKNYKKALEDEKNMTDQELAIKNVGKMDPKRHI 286 Query: 345 EEHVSNLMSSNIVQTLGTMLDT 280 + VS +++ NIVQ+L M+ T Sbjct: 287 ADEVSKMLNDNIVQSLAGMMAT 308
>RPN11_ASHGO (Q750E9) 26S proteasome regulatory subunit RPN11| Length = 311 Score = 117 bits (294), Expect = 3e-26 Identities = 59/143 (41%), Positives = 84/143 (58%) Frame = -3 Query: 705 PQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXK 526 P T++ QEPRQTTSNVG LNKP+IQ+LIHGLNRHYYS+ I+Y + Sbjct: 166 PATVVRNQEPRQTTSNVGLLNKPNIQSLIHGLNRHYYSLNIDYHKTSAELNMLMNLHKEQ 225 Query: 525 WTDGLIIKKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHL 346 W GL + + + N E ++ + +A +Y K ++EE EL ++L VG+QD KKHL Sbjct: 226 WQSGLKMHDYKEKERINLEATKKSVRIAEQYTKRIEEEKELTEDELKTRYVGKQDPKKHL 285 Query: 345 EEHVSNLMSSNIVQTLGTMLDTV 277 E ++ NIV L +++V Sbjct: 286 SETAERVLEENIVSVLTAGVNSV 308
>RPN11_YEAST (P43588) 26S proteasome regulatory subunit RPN11 (MPR1 protein)| Length = 306 Score = 111 bits (278), Expect = 2e-24 Identities = 57/135 (42%), Positives = 79/135 (58%) Frame = -3 Query: 681 EPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXKWTDGLIIK 502 EPRQTTSN G LNK +IQALIHGLNRHYYS+ I+Y +W GL + Sbjct: 169 EPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMY 228 Query: 501 KFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLM 322 ++ ++N + M+ +A +Y+K ++EE EL E+L VGRQD KKHL E + Sbjct: 229 DYEEKEESNLAATKSMVKIAEQYSKRIEEEKELTEEELKTRYVGRQDPKKHLSETADETL 288 Query: 321 SSNIVQTLGTMLDTV 277 +NIV L +++V Sbjct: 289 ENNIVSVLTAGVNSV 303
>RPN11_CANGA (Q6FKS1) 26S proteasome regulatory subunit RPN11| Length = 306 Score = 109 bits (272), Expect = 9e-24 Identities = 55/136 (40%), Positives = 79/136 (58%) Frame = -3 Query: 684 QEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXKWTDGLII 505 QEPRQTTSN G +NK +IQALIHGLNRHYYS+ I+Y +W GL + Sbjct: 168 QEPRQTTSNSGLMNKANIQALIHGLNRHYYSLNIDYHKTPAETKMLLNLHKEQWQSGLKM 227 Query: 504 KKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNL 325 + + N E + M+++A +Y+K ++EE EL E+L VG+QD KKHL + N Sbjct: 228 QDYQEKETENLEATKRMVAVAQQYSKRIEEEKELSEEELKTRYVGKQDPKKHLAKTAENT 287 Query: 324 MSSNIVQTLGTMLDTV 277 + N V L ++++ Sbjct: 288 LEENTVSVLTAGVNSI 303
>YPT5_CAEEL (P41883) Hypothetical protein F37A4.5 in chromosome III| Length = 319 Score = 75.1 bits (183), Expect = 2e-13 Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 6/139 (4%) Frame = -3 Query: 681 EPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXKWTDGLIIK 502 EPRQTTSN+GHL KPS+ +++HGL YYS+ + YR W D L + Sbjct: 176 EPRQTTSNLGHLTKPSLISVVHGLGTKYYSLNVAYRMGSNEQKMLMCLNKKSWYDQLNMS 235 Query: 501 KFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELP------PEKLAIANVGRQDAKKHLEE 340 + K EE + + L +NK + E E P + + G+ +AK+ L+ Sbjct: 236 TYSELEKKQEEKFKSINKLIAVFNKDIDEVKEKPIADKKGKTQEEVKKFGKINAKQQLQM 295 Query: 339 HVSNLMSSNIVQTLGTMLD 283 S+L++ ++ L M++ Sbjct: 296 ITSSLLNDSLCHQLTAMIN 314
>VL3_REOVL (P17376) Minor core protein lambda-3| Length = 1267 Score = 32.0 bits (71), Expect = 1.9 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = -3 Query: 519 DGLIIKKFDTHSKTNEETVQEMLSLAIKYNK 427 DGL+I +T K N ET+Q+ML L KY + Sbjct: 735 DGLMIIDGNTAGKVNSETIQKMLELISKYGE 765 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,322,032 Number of Sequences: 219361 Number of extensions: 1667087 Number of successful extensions: 4426 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4303 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4424 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7139613222 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
