ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags6k02 |
|---|---|
| Clone Library Name | barley_pub |
>TB1RA_XENLA (Q7SZM9) F-box-like/WD-repeat-containing protein TBL1XR1-A| (Transducin beta-like 1X-related protein 1-A) (Nuclear receptor corepressor/HDAC3 complex subunit TBLR1-A) (TBL1-related protein 1-A) (xTBLR1) Length = 519 Score = 32.0 bits (71), Expect = 1.6 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%) Frame = -3 Query: 457 GALVLAVGKQSPPVFALYWDKKLQFSLQG----RTALWDA 350 G L +G+ P+FAL W+KK F L T +WDA Sbjct: 261 GNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDA 300
>TBL1R_MOUSE (Q8BHJ5) F-box-like/WD-repeat protein TBL1XR1 (Transducin beta-like| 1X-related protein 1) (Nuclear receptor corepressor/HDAC3 complex subunit TBLR1) (TBL1-related protein 1) Length = 514 Score = 32.0 bits (71), Expect = 1.6 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%) Frame = -3 Query: 457 GALVLAVGKQSPPVFALYWDKKLQFSLQG----RTALWDA 350 G L +G+ P+FAL W+KK F L T +WDA Sbjct: 256 GNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDA 295
>TBL1R_HUMAN (Q9BZK7) F-box-like/WD-repeat protein TBL1XR1 (Transducin beta-like| 1X-related protein 1) (Nuclear receptor corepressor/HDAC3 complex subunit TBLR1) (TBL1-related protein 1) Length = 514 Score = 32.0 bits (71), Expect = 1.6 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%) Frame = -3 Query: 457 GALVLAVGKQSPPVFALYWDKKLQFSLQG----RTALWDA 350 G L +G+ P+FAL W+KK F L T +WDA Sbjct: 256 GNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDA 295
>TB1RB_XENLA (Q6GPC6) F-box-like/WD-repeat-containing protein TBL1XR1-B| (Transducin beta-like 1X-related homolog 1-B) (Nuclear receptor corepressor/HDAC3 complex subunit TBLR1-B) (TBL1-related protein 1-B) Length = 522 Score = 32.0 bits (71), Expect = 1.6 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%) Frame = -3 Query: 457 GALVLAVGKQSPPVFALYWDKKLQFSLQG----RTALWDA 350 G L +G+ P+FAL W+KK F L T +WDA Sbjct: 264 GNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDA 303
>ARAB2_STAS1 (Q49V87) Ribulokinase 2 (EC 2.7.1.16)| Length = 542 Score = 31.6 bits (70), Expect = 2.1 Identities = 14/42 (33%), Positives = 25/42 (59%) Frame = +1 Query: 103 LVQDIAGVDNNVAPATGTVIINPLNGGRNQYYNSSLLASKQP 228 L + I +D+ APA G I+ + GG + ++S++ A K+P Sbjct: 457 LNKKITVIDSEYAPAIGAAILGAICGGAHPNFSSAIQAMKEP 498
>TBLX_MOUSE (Q9QXE7) F-box-like/WD-repeat protein TBL1X (Transducin beta-like| 1X protein) Length = 527 Score = 30.8 bits (68), Expect = 3.5 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%) Frame = -3 Query: 457 GALVLAVGKQSPPVFALYWDKK----LQFSLQGRTALWDA 350 G L +G+ P+FAL W+KK L + T +WDA Sbjct: 269 GNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDA 308
>TBL1Y_HUMAN (Q9BQ87) F-box-like/WD-repeat protein TBL1Y (Transducin beta-like| 1Y protein) (Transducin-beta-like 1, Y-linked) Length = 522 Score = 30.8 bits (68), Expect = 3.5 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%) Frame = -3 Query: 457 GALVLAVGKQSPPVFALYWDKK----LQFSLQGRTALWDA 350 G L +G+ P+FAL W+KK L + T +WDA Sbjct: 266 GNLASTLGQHKGPIFALKWNKKGNYVLSAGVDKTTIIWDA 305
>ARAB_STAAW (Q8NXY1) Ribulokinase (EC 2.7.1.16)| Length = 545 Score = 30.8 bits (68), Expect = 3.5 Identities = 16/54 (29%), Positives = 28/54 (51%) Frame = +1 Query: 124 VDNNVAPATGTVIINPLNGGRNQYYNSSLLASKQPFFSSPCLNQEQKGCSRQKT 285 +D+ APA G I+ ++GG + N ++ A K+P +N E + R +T Sbjct: 464 MDSEYAPAIGAAILGAVSGGAHNSINDAVDAMKEPILYE--INPEAEKVQRYET 515
>ARAB_STAAS (Q6GBT5) Ribulokinase (EC 2.7.1.16)| Length = 545 Score = 30.8 bits (68), Expect = 3.5 Identities = 16/54 (29%), Positives = 28/54 (51%) Frame = +1 Query: 124 VDNNVAPATGTVIINPLNGGRNQYYNSSLLASKQPFFSSPCLNQEQKGCSRQKT 285 +D+ APA G I+ ++GG + N ++ A K+P +N E + R +T Sbjct: 464 MDSEYAPAIGAAILGAVSGGAHNSINDAVDAMKEPILYE--INPEAEKVQRYET 515
>ARAB_STAAR (Q6GJB6) Ribulokinase (EC 2.7.1.16)| Length = 545 Score = 30.8 bits (68), Expect = 3.5 Identities = 16/54 (29%), Positives = 28/54 (51%) Frame = +1 Query: 124 VDNNVAPATGTVIINPLNGGRNQYYNSSLLASKQPFFSSPCLNQEQKGCSRQKT 285 +D+ APA G I+ ++GG + N ++ A K+P +N E + R +T Sbjct: 464 MDSEYAPAIGAAILGAVSGGAHNSINDAVDAMKEPILYE--INPEAEKVQRYET 515
>ARAB_STAAN (P63550) Ribulokinase (EC 2.7.1.16)| Length = 545 Score = 30.8 bits (68), Expect = 3.5 Identities = 16/54 (29%), Positives = 28/54 (51%) Frame = +1 Query: 124 VDNNVAPATGTVIINPLNGGRNQYYNSSLLASKQPFFSSPCLNQEQKGCSRQKT 285 +D+ APA G I+ ++GG + N ++ A K+P +N E + R +T Sbjct: 464 MDSEYAPAIGAAILGAVSGGAHNSINDAVDAMKEPILYE--INPEAEKVQRYET 515
>ARAB_STAAM (P63549) Ribulokinase (EC 2.7.1.16)| Length = 545 Score = 30.8 bits (68), Expect = 3.5 Identities = 16/54 (29%), Positives = 28/54 (51%) Frame = +1 Query: 124 VDNNVAPATGTVIINPLNGGRNQYYNSSLLASKQPFFSSPCLNQEQKGCSRQKT 285 +D+ APA G I+ ++GG + N ++ A K+P +N E + R +T Sbjct: 464 MDSEYAPAIGAAILGAVSGGAHNSINDAVDAMKEPILYE--INPEAEKVQRYET 515
>ARAB_STAAC (Q5HIC3) Ribulokinase (EC 2.7.1.16)| Length = 545 Score = 30.8 bits (68), Expect = 3.5 Identities = 16/54 (29%), Positives = 28/54 (51%) Frame = +1 Query: 124 VDNNVAPATGTVIINPLNGGRNQYYNSSLLASKQPFFSSPCLNQEQKGCSRQKT 285 +D+ APA G I+ ++GG + N ++ A K+P +N E + R +T Sbjct: 464 MDSEYAPAIGAAILGAVSGGAHNSINDAVDAMKEPILYE--INPEAEKVQRYET 515
>DCUP_COXBU (Q83EP0) Uroporphyrinogen decarboxylase (EC 4.1.1.37) (URO-D) (UPD)| Length = 361 Score = 30.8 bits (68), Expect = 3.5 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = +1 Query: 70 LD*GISHSNTRLVQDIAGVDNNVAPATGTVIINPLNGGRN 189 LD I S+ + D GVD ++AP G VI NP+ ++ Sbjct: 69 LDAAIIFSDILTIPDAMGVDLHIAPTVGPVIRNPVRSAQD 108
>CN092_RAT (Q99PM1) Epidermal Langerhans cell protein LCP1| Length = 619 Score = 30.4 bits (67), Expect = 4.6 Identities = 14/47 (29%), Positives = 24/47 (51%) Frame = -3 Query: 532 ILPPKERFPEKYVALISGVPAIIHPGALVLAVGKQSPPVFALYWDKK 392 ++P E + V L+SG P + P + G ++PPV + WD + Sbjct: 542 VVPEVESPSQMDVELVSGSPVTLSPQPRCVRSGCENPPVISKDWDNE 588
>ARGI_RANCA (P49900) Arginase, hepatic (EC 3.5.3.1)| Length = 323 Score = 30.0 bits (66), Expect = 6.0 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 9/60 (15%) Frame = +1 Query: 112 DIAGVDNNVAPATGTVIINPLNGG---------RNQYYNSSLLASKQPFFSSPCLNQEQK 264 DI G+D +VAPATGT P+ GG Q YN+ LL++ +P + ++ Sbjct: 233 DIDGLDPSVAPATGT----PVPGGLTYREGMYITEQLYNTGLLSAVDMMEVNPSRGETER 288
>CN092_MOUSE (Q8BU11) Epidermal Langerhans cell protein LCP1| Length = 619 Score = 30.0 bits (66), Expect = 6.0 Identities = 14/47 (29%), Positives = 24/47 (51%) Frame = -3 Query: 532 ILPPKERFPEKYVALISGVPAIIHPGALVLAVGKQSPPVFALYWDKK 392 ++P E + V L+SG P + P + G ++PPV + WD + Sbjct: 542 VVPEVESPSQMDVELVSGSPVALSPQPRCVRSGCENPPVVSKDWDNE 588
>ZNF25_HUMAN (P17030) Zinc finger protein 25 (Zinc finger protein KOX19)| Length = 456 Score = 30.0 bits (66), Expect = 6.0 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -1 Query: 234 EEGLFACQEGTVVVLVSTTIKGINYDCPSC 145 E G F CQ+ ++V T KG +YDC C Sbjct: 122 ECGKFFCQKSALIVHQHTHSKGKSYDCDKC 151
>POLG_CXB5P (Q03053) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2184 Score = 29.6 bits (65), Expect = 7.9 Identities = 19/84 (22%), Positives = 32/84 (38%) Frame = -2 Query: 563 PVQQKSFISRNPSTEREVSGEVCCFDIWRSSNYSPRSSCASCGQAESSSFCSILGQETAV 384 P K+++ R P +C + + N+ P S + + +LGQ+T Sbjct: 808 PKHVKTWVPRPP--------RLCQYQKAGNVNFEPTGVTESRTEITAMQTTGVLGQQTGA 859 Query: 383 FSSGKNSTVGRHFASMPPNQSWLW 312 G V RH A+ Q +W Sbjct: 860 ICIGNYRVVNRHLATSEDWQRCVW 883
>CN092_HUMAN (O94842) Epidermal Langerhans cell protein LCP1| Length = 621 Score = 29.6 bits (65), Expect = 7.9 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = -3 Query: 532 ILPPKERFPEKYVALISGVPAIIHPGALVLAVGKQSPPVFALYWDKK 392 ++P E + V L+SG P + P + G ++PP+ + WD + Sbjct: 544 VVPEVESPSQMDVELVSGSPVALSPQPRCVRSGCENPPIVSKDWDNE 590
>TBL1X_HUMAN (O60907) F-box-like/WD-repeat protein TBL1X (Transducin beta-like| 1X protein) (Transducin-beta-like 1, X-linked) (SMAP55) Length = 526 Score = 29.6 bits (65), Expect = 7.9 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%) Frame = -3 Query: 457 GALVLAVGKQSPPVFALYWDKK----LQFSLQGRTALWDA 350 G L +G+ P+FAL W++K L + T +WDA Sbjct: 268 GNLASTLGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDA 307 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,655,393 Number of Sequences: 219361 Number of extensions: 2108214 Number of successful extensions: 6080 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 5818 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6075 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
