ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6k02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK072700.1| Oryza sativa (japonica cultivar-group) cDNA clon... 452 e-124
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 313 4e-82
3gb|AC137075.2| Genomic sequence for Oryza sativa, Nipponbare str... 313 4e-82
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 313 4e-82
5gb|AY111496.1| Zea mays CL59287_1 mRNA sequence 293 4e-76
6gb|BT014537.1| Lycopersicon esculentum clone 133951F, mRNA sequence 74 6e-10
7ref|NM_100671.2| Arabidopsis thaliana unknown protein AT1G07970 ... 68 4e-08
8gb|AC152176.5| Medicago truncatula clone mth2-65c4, complete seq... 58 4e-05
9gb|AY428924.1| Carica papaya isolate cpsm87 sex hermaphrodite ch... 50 0.009
10gb|AC153364.4| Mus musculus BAC clone RP23-35J21 from chromosome... 42 2.2
11gb|AC004797.1|AC004797 Homo sapiens chromosome 17, clone hRPC.62... 42 2.2
12gb|AC132134.2| Mus musculus BAC clone RP23-267P6 from chromosome... 40 8.8
13gb|AC116387.7| Mus musculus chromosome 18, clone RP23-37P9, comp... 40 8.8
14gb|AC124507.4| Mus musculus BAC clone RP23-430B14 from chromosom... 40 8.8
15gb|AC123033.4| Mus musculus BAC clone RP24-482F14 from chromosom... 40 8.8
16gb|AC080068.6| Homo sapiens BAC clone RP11-97L4 from 7, complete... 40 8.8
17gb|AC007090.3| Homo sapiens PAC clone RP4-701O19 from 7, complet... 40 8.8
18gb|AC117810.8| Mus musculus chromosome 18, clone RP24-571D2, com... 40 8.8
19gb|AC084821.26| Mus musculus strain C57BL/6J clone rp23-395h6 ma... 40 8.8
20emb|AL691420.13| Human DNA sequence from clone RP11-352C6 on chr... 40 8.8
21gb|AC104831.3| Homo sapiens 3 BAC RP11-451G4 (Roswell Park Cance... 40 8.8
22gb|AC106724.3| Homo sapiens 3 BAC RP11-270G15 (Roswell Park Canc... 40 8.8
23gb|AC083815.17|AC083815 Mus musculus 11 BAC RP23-270L8 (Roswell ... 40 8.8
24gb|AY007567.1| Mus musculus cardiotrophin-1 gene, promoter and c... 40 8.8
25dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome 40 8.8
26dbj|AP001747.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 8.8
27dbj|AP006210.1| Homo sapiens genomic DNA, chromosome 9, clone:RP... 40 8.8
28gb|AC163497.14| Mus musculus chromosome 1, clone RP24-185N14, co... 40 8.8
29dbj|AP001628.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 8.8
30dbj|AB020873.1| Homo sapiens genomic DNA of 9q32 anti-oncogene o... 40 8.8

>dbj|AK072700.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135G07, full
            insert sequence
          Length = 2409

 Score =  452 bits (228), Expect = e-124
 Identities = 367/412 (89%), Gaps = 1/412 (0%)
 Strand = Plus / Minus

                                                                        
Query: 231  cttcagctctccatgtctgaatcaagaacagaaaggatgttcaaggcagaagacccgatg 290
            |||||||| |||||||||||||||||||| || |||||||||||||| ||||| || |||
Sbjct: 2226 cttcagctttccatgtctgaatcaagaactgacaggatgttcaaggcggaagaacctatg 2167

                                                                        
Query: 291  tgggttcccctgacaataccgccataaccaactttgatttggtggcatagaagcaaaatg 350
            ||| ||||||| || | ||||||||||||||| || ||||||||||| |||||||| || 
Sbjct: 2166 tggattcccctaactacaccgccataaccaacatttatttggtggcacagaagcaagata 2107

                                                                        
Query: 351  gcgtcccacagtgctgttcttccctgaagagaaaactgcagtttcttgtcccagtataga 410
            || ||||||| ||| |||||||||||||||||||||||||  || ||||||||||| |||
Sbjct: 2106 gcatcccacaatgccgttcttccctgaagagaaaactgcaactttttgtcccagtacaga 2047

                                                                        
Query: 411  gcaaaaactggaggactctgcttgcccacagctagcacaagagctcctgggtgaataatt 470
            |||||||  ||||||||||||||||||||||| || | |||||| ||||||||||||| |
Sbjct: 2046 gcaaaaatcggaggactctgcttgcccacagccagtataagagcacctgggtgaataact 1987

                                                                        
Query: 471  gctggaacgccagatatcaaagcaacatacttctccggaaacctctctttcggtggaagg 530
            ||||||||||| || |||||||||||||||||||| |||||||||||||| |||||||| 
Sbjct: 1986 gctggaacgccggaaatcaaagcaacatacttctctggaaacctctcttttggtggaaga 1927

                                                                        
Query: 531  attcctagaaataaaggatttttgctggactgggcacccggagtaggaggttggatcaac 590
            | |||||||||||||||||||||||| || |||||| || ||||| ||||| ||||||||
Sbjct: 1926 actcctagaaataaaggatttttgctagattgggca-ccagagtaagaggtaggatcaac 1868

                                                                
Query: 591  atgaagcatccactttggatgttcaaggaaagcagcaaacaagtagagaaga 642
            |||||||||||| ||||| ||||| |||||||||||||||||||| ||||||
Sbjct: 1867 atgaagcatccattttgggtgttcgaggaaagcagcaaacaagtacagaaga 1816



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  313 bits (158), Expect = 4e-82
 Identities = 243/270 (90%), Gaps = 1/270 (0%)
 Strand = Plus / Minus

                                                                           
Query: 373     cctgaagagaaaactgcagtttcttgtcccagtatagagcaaaaactggaggactctgct 432
               ||||||||||||||||||  || ||||||||||| ||||||||||  |||||||||||||
Sbjct: 9969847 cctgaagagaaaactgcaactttttgtcccagtacagagcaaaaatcggaggactctgct 9969788

                                                                           
Query: 433     tgcccacagctagcacaagagctcctgggtgaataattgctggaacgccagatatcaaag 492
               |||||||||| || | |||||| ||||||||||||| |||||||||||| || |||||||
Sbjct: 9969787 tgcccacagccagtataagagcacctgggtgaataactgctggaacgccggaaatcaaag 9969728

                                                                           
Query: 493     caacatacttctccggaaacctctctttcggtggaaggattcctagaaataaaggatttt 552
               ||||||||||||| |||||||||||||| |||||||| | ||||||||||||||||||||
Sbjct: 9969727 caacatacttctctggaaacctctcttttggtggaagaactcctagaaataaaggatttt 9969668

                                                                           
Query: 553     tgctggactgggcacccggagtaggaggttggatcaacatgaagcatccactttggatgt 612
               |||| || |||||| || ||||| ||||| |||||||||||||||||||| ||||| |||
Sbjct: 9969667 tgctagattgggca-ccagagtaagaggtaggatcaacatgaagcatccattttgggtgt 9969609

                                             
Query: 613     tcaaggaaagcagcaaacaagtagagaaga 642
               || |||||||||||||||||||| ||||||
Sbjct: 9969608 tcgaggaaagcagcaaacaagtacagaaga 9969579



 Score =  147 bits (74), Expect = 5e-32
 Identities = 128/146 (87%)
 Strand = Plus / Minus

                                                                           
Query: 231     cttcagctctccatgtctgaatcaagaacagaaaggatgttcaaggcagaagacccgatg 290
               |||||||| |||||||||||||||||||| || |||||||||||||| ||||| || |||
Sbjct: 9970646 cttcagctttccatgtctgaatcaagaactgacaggatgttcaaggcggaagaacctatg 9970587

                                                                           
Query: 291     tgggttcccctgacaataccgccataaccaactttgatttggtggcatagaagcaaaatg 350
               ||| ||||||| || | ||||||||||||||| || ||||||||||| |||||||| || 
Sbjct: 9970586 tggattcccctaactacaccgccataaccaacatttatttggtggcacagaagcaagata 9970527

                                         
Query: 351     gcgtcccacagtgctgttcttccctg 376
               || ||||||| ||| |||||||||||
Sbjct: 9970526 gcatcccacaatgccgttcttccctg 9970501



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>gb|AC137075.2| Genomic sequence for Oryza sativa, Nipponbare striain, clone
             OSJNBb0027B12, from chromosome 3, complete sequence
          Length = 127426

 Score =  313 bits (158), Expect = 4e-82
 Identities = 243/270 (90%), Gaps = 1/270 (0%)
 Strand = Plus / Minus

                                                                         
Query: 373   cctgaagagaaaactgcagtttcttgtcccagtatagagcaaaaactggaggactctgct 432
             ||||||||||||||||||  || ||||||||||| ||||||||||  |||||||||||||
Sbjct: 19763 cctgaagagaaaactgcaactttttgtcccagtacagagcaaaaatcggaggactctgct 19704

                                                                         
Query: 433   tgcccacagctagcacaagagctcctgggtgaataattgctggaacgccagatatcaaag 492
             |||||||||| || | |||||| ||||||||||||| |||||||||||| || |||||||
Sbjct: 19703 tgcccacagccagtataagagcacctgggtgaataactgctggaacgccggaaatcaaag 19644

                                                                         
Query: 493   caacatacttctccggaaacctctctttcggtggaaggattcctagaaataaaggatttt 552
             ||||||||||||| |||||||||||||| |||||||| | ||||||||||||||||||||
Sbjct: 19643 caacatacttctctggaaacctctcttttggtggaagaactcctagaaataaaggatttt 19584

                                                                         
Query: 553   tgctggactgggcacccggagtaggaggttggatcaacatgaagcatccactttggatgt 612
             |||| || |||||| || ||||| ||||| |||||||||||||||||||| ||||| |||
Sbjct: 19583 tgctagattgggca-ccagagtaagaggtaggatcaacatgaagcatccattttgggtgt 19525

                                           
Query: 613   tcaaggaaagcagcaaacaagtagagaaga 642
             || |||||||||||||||||||| ||||||
Sbjct: 19524 tcgaggaaagcagcaaacaagtacagaaga 19495



 Score =  147 bits (74), Expect = 5e-32
 Identities = 128/146 (87%)
 Strand = Plus / Minus

                                                                         
Query: 231   cttcagctctccatgtctgaatcaagaacagaaaggatgttcaaggcagaagacccgatg 290
             |||||||| |||||||||||||||||||| || |||||||||||||| ||||| || |||
Sbjct: 20562 cttcagctttccatgtctgaatcaagaactgacaggatgttcaaggcggaagaacctatg 20503

                                                                         
Query: 291   tgggttcccctgacaataccgccataaccaactttgatttggtggcatagaagcaaaatg 350
             ||| ||||||| || | ||||||||||||||| || ||||||||||| |||||||| || 
Sbjct: 20502 tggattcccctaactacaccgccataaccaacatttatttggtggcacagaagcaagata 20443

                                       
Query: 351   gcgtcccacagtgctgttcttccctg 376
             || ||||||| ||| |||||||||||
Sbjct: 20442 gcatcccacaatgccgttcttccctg 20417



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  313 bits (158), Expect = 4e-82
 Identities = 243/270 (90%), Gaps = 1/270 (0%)
 Strand = Plus / Minus

                                                                           
Query: 373     cctgaagagaaaactgcagtttcttgtcccagtatagagcaaaaactggaggactctgct 432
               ||||||||||||||||||  || ||||||||||| ||||||||||  |||||||||||||
Sbjct: 9967968 cctgaagagaaaactgcaactttttgtcccagtacagagcaaaaatcggaggactctgct 9967909

                                                                           
Query: 433     tgcccacagctagcacaagagctcctgggtgaataattgctggaacgccagatatcaaag 492
               |||||||||| || | |||||| ||||||||||||| |||||||||||| || |||||||
Sbjct: 9967908 tgcccacagccagtataagagcacctgggtgaataactgctggaacgccggaaatcaaag 9967849

                                                                           
Query: 493     caacatacttctccggaaacctctctttcggtggaaggattcctagaaataaaggatttt 552
               ||||||||||||| |||||||||||||| |||||||| | ||||||||||||||||||||
Sbjct: 9967848 caacatacttctctggaaacctctcttttggtggaagaactcctagaaataaaggatttt 9967789

                                                                           
Query: 553     tgctggactgggcacccggagtaggaggttggatcaacatgaagcatccactttggatgt 612
               |||| || |||||| || ||||| ||||| |||||||||||||||||||| ||||| |||
Sbjct: 9967788 tgctagattgggca-ccagagtaagaggtaggatcaacatgaagcatccattttgggtgt 9967730

                                             
Query: 613     tcaaggaaagcagcaaacaagtagagaaga 642
               || |||||||||||||||||||| ||||||
Sbjct: 9967729 tcgaggaaagcagcaaacaagtacagaaga 9967700



 Score =  147 bits (74), Expect = 5e-32
 Identities = 128/146 (87%)
 Strand = Plus / Minus

                                                                           
Query: 231     cttcagctctccatgtctgaatcaagaacagaaaggatgttcaaggcagaagacccgatg 290
               |||||||| |||||||||||||||||||| || |||||||||||||| ||||| || |||
Sbjct: 9968767 cttcagctttccatgtctgaatcaagaactgacaggatgttcaaggcggaagaacctatg 9968708

                                                                           
Query: 291     tgggttcccctgacaataccgccataaccaactttgatttggtggcatagaagcaaaatg 350
               ||| ||||||| || | ||||||||||||||| || ||||||||||| |||||||| || 
Sbjct: 9968707 tggattcccctaactacaccgccataaccaacatttatttggtggcacagaagcaagata 9968648

                                         
Query: 351     gcgtcccacagtgctgttcttccctg 376
               || ||||||| ||| |||||||||||
Sbjct: 9968647 gcatcccacaatgccgttcttccctg 9968622



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>gb|AY111496.1| Zea mays CL59287_1 mRNA sequence
          Length = 643

 Score =  293 bits (148), Expect = 4e-76
 Identities = 307/362 (84%), Gaps = 1/362 (0%)
 Strand = Plus / Plus

                                                                       
Query: 270 ttcaaggcagaagacccgatgtgggttcccctgacaataccgccataaccaactttgatt 329
           ||||||||||| || ||||| ||| |||| || || | ||||||||| ||||| || |||
Sbjct: 218 ttcaaggcagacgaaccgatatggattcctctaaccacaccgccatacccaacgtttatt 277

                                                                       
Query: 330 tggtggcatagaagcaaaatggcgtcccacagtgctgttcttccctgaagagaaaactgc 389
           ||||| |||| ||| | |||||| |||||||| ||||||||||||||||||||||| |||
Sbjct: 278 tggtgacataaaagtagaatggcatcccacagagctgttcttccctgaagagaaaattgc 337

                                                                       
Query: 390 agtttcttgtcccagtatagagcaaaaactggaggactctgcttgcccacagctagcaca 449
            | ||||||||||||||||||||      ||||||| ||||||||| |||||| || | |
Sbjct: 338 tgcttcttgtcccagtatagagcnnnnnttggaggattctgcttgctcacagccagtata 397

                                                                       
Query: 450 agagctcctgggtgaataattgctggaacgccagatatcaaagcaacatacttctccgga 509
           ||||| ||||||||||||||||||||||| || ||||||| |||||||||||| || || 
Sbjct: 398 agagcccctgggtgaataattgctggaacacctgatatcagagcaacatacttttctggg 457

                                                                       
Query: 510 aacctctctttcggtggaaggattcctagaaataaaggatttttgctggactgggcaccc 569
           ||||||||||| |||||||| | ||| |||||||| |||     ||||||||||| | ||
Sbjct: 458 aacctctcttttggtggaagaactcccagaaataagggannnnngctggactggg-aacc 516

                                                                       
Query: 570 ggagtaggaggttggatcaacatgaagcatccactttggatgttcaaggaaagcagcaaa 629
            ||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 517 agagtacgaggtagggtcaacatgaagcatccattttggatgttcaaggaaagcagcaaa 576

             
Query: 630 ca 631
           ||
Sbjct: 577 ca 578



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>gb|BT014537.1| Lycopersicon esculentum clone 133951F, mRNA sequence
          Length = 2312

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                        
Query: 354  tcccacagtgctgttcttccctgaagagaaaactgcagtttcttgtcccagtatagagca 413
            ||||| ||||||||||||||||| |||||||||||  |  |||| ||||||||||| |||
Sbjct: 2028 tcccagagtgctgttcttccctggagagaaaactgaggcatcttatcccagtatagggca 1969

                                         
Query: 414  aaaactggaggactctgcttgcccacagc 442
            |||||||| ||| | ||||| || |||||
Sbjct: 1968 aaaactgggggattttgctttccaacagc 1940



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 583  ggatcaacatgaagcatccactttggatgttcaaggaaagca 624
            ||||||||||| |||||||||||||| || || |||||||||
Sbjct: 1800 ggatcaacatgtagcatccactttgggtgctccaggaaagca 1759



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>ref|NM_100671.2| Arabidopsis thaliana unknown protein AT1G07970 mRNA, complete cds
          Length = 2424

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                  
Query: 353  gtcccacagtgctgttcttccctgaagagaaaactgcagtttcttgtcccagta 406
            |||||| || ||||||||||||||||||| |||||||| |||||| ||||||||
Sbjct: 2067 gtcccatagcgctgttcttccctgaagagtaaactgcactttcttatcccagta 2014



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>gb|AC152176.5| Medicago truncatula clone mth2-65c4, complete sequence
          Length = 161536

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                          
Query: 580   gttggatcaacatgaagcatccactttggatgttcaaggaaagca 624
             |||| ||| ||||| |||||||||||||||||||| |||||||||
Sbjct: 24385 gttgcatccacatgtagcatccactttggatgttctaggaaagca 24341



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                         
Query: 373   cctgaagagaaaactgcagtttcttgtcccagtatagagcaaaaactggaggactctgct 432
             |||||||||||| |||||| ||||| |||||||| |  ||||||| ||| |||| |||||
Sbjct: 24591 cctgaagagaaagctgcagcttcttatcccagtacaaggcaaaaattgggggaccctgct 24532

              
Query: 433   t 433
             |
Sbjct: 24531 t 24531



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 67/82 (81%)
 Strand = Plus / Minus

                                                                         
Query: 297   cccctgacaataccgccataaccaactttgatttggtggcatagaagcaaaatggcgtcc 356
             ||||| || ||||| ||||| |||||||| || |  || || |||| ||| ||||  |||
Sbjct: 24834 cccctaacgatacctccatacccaactttaatcttatgacacagaatcaagatggaatcc 24775

                                   
Query: 357   cacagtgctgttcttccctgaa 378
             || |||||||||||||||||||
Sbjct: 24774 caaagtgctgttcttccctgaa 24753



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>gb|AY428924.1| Carica papaya isolate cpsm87 sex hermaphrodite chromosome Y male
           specific sequence
          Length = 380

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                        
Query: 332 gtggcatagaagcaaaatggcgtcccacagtgctgttcttccctg 376
           |||||||| |||||||||||  ||||| | |||||||||||||||
Sbjct: 372 gtggcataaaagcaaaatggaatcccataatgctgttcttccctg 328



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>gb|AC153364.4| Mus musculus BAC clone RP23-35J21 from chromosome 10, complete sequence
          Length = 231668

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 155    cagtcataattaatcccctta 175
              |||||||||||||||||||||
Sbjct: 116986 cagtcataattaatcccctta 117006



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>gb|AC004797.1|AC004797 Homo sapiens chromosome 17, clone hRPC.62_O_9, complete sequence
          Length = 113891

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 210   cctggcaagcaaacagccctt 230
             |||||||||||||||||||||
Sbjct: 82967 cctggcaagcaaacagccctt 82947



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>gb|AC132134.2| Mus musculus BAC clone RP23-267P6 from chromosome 5, complete sequence
          Length = 227078

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    gttcaagacattgctggtgt 125
              ||||||||||||||||||||
Sbjct: 188053 gttcaagacattgctggtgt 188034



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>gb|AC116387.7| Mus musculus chromosome 18, clone RP23-37P9, complete sequence
          Length = 217116

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 623    cagcaaacaagtagagaaga 642
              ||||||||||||||||||||
Sbjct: 178706 cagcaaacaagtagagaaga 178725



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>gb|AC124507.4| Mus musculus BAC clone RP23-430B14 from chromosome 7, complete sequence
          Length = 204278

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     actcagtaataaatttcagg 64
              ||||||||||||||||||||
Sbjct: 177274 actcagtaataaatttcagg 177293



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>gb|AC123033.4| Mus musculus BAC clone RP24-482F14 from chromosome 5, complete sequence
          Length = 180745

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   gttcaagacattgctggtgt 125
             ||||||||||||||||||||
Sbjct: 48296 gttcaagacattgctggtgt 48277



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>gb|AC080068.6| Homo sapiens BAC clone RP11-97L4 from 7, complete sequence
          Length = 62623

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 259 cagaaaggatgttcaaggcagaag 282
           |||||||||||||| |||||||||
Sbjct: 336 cagaaaggatgttctaggcagaag 359



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>gb|AC007090.3| Homo sapiens PAC clone RP4-701O19 from 7, complete sequence
          Length = 68229

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 259   cagaaaggatgttcaaggcagaag 282
             |||||||||||||| |||||||||
Sbjct: 66570 cagaaaggatgttctaggcagaag 66593



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>gb|AC117810.8| Mus musculus chromosome 18, clone RP24-571D2, complete sequence
          Length = 207527

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 623   cagcaaacaagtagagaaga 642
             ||||||||||||||||||||
Sbjct: 14945 cagcaaacaagtagagaaga 14964



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>gb|AC084821.26| Mus musculus strain C57BL/6J clone rp23-395h6 map 1, complete sequence
          Length = 211776

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 218    gcaaacagcccttcttcagctctc 241
              |||| |||||||||||||||||||
Sbjct: 197283 gcaaccagcccttcttcagctctc 197260



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>emb|AL691420.13| Human DNA sequence from clone RP11-352C6 on chromosome 9, complete
              sequence
          Length = 175726

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 216    aagcaaacagcccttcttca 235
              ||||||||||||||||||||
Sbjct: 165265 aagcaaacagcccttcttca 165284



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>gb|AC104831.3| Homo sapiens 3 BAC RP11-451G4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 115000

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 40     atacaactcagtaataaatttcag 63
              |||||||||||| |||||||||||
Sbjct: 113404 atacaactcagtcataaatttcag 113381



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>gb|AC106724.3| Homo sapiens 3 BAC RP11-270G15 (Roswell Park Cancer Institute Human
           BAC Library) complete sequence
          Length = 162831

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 40  atacaactcagtaataaatttcag 63
           |||||||||||| |||||||||||
Sbjct: 187 atacaactcagtcataaatttcag 164



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>gb|AC083815.17|AC083815 Mus musculus 11 BAC RP23-270L8 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 173810

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 437   cacagctagcacaagagctc 456
             ||||||||||||||||||||
Sbjct: 94462 cacagctagcacaagagctc 94443



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>gb|AY007567.1| Mus musculus cardiotrophin-1 gene, promoter and complete cds
          Length = 9713

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 45   actcagtaataaatttcagg 64
            ||||||||||||||||||||
Sbjct: 8076 actcagtaataaatttcagg 8095



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>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome
          Length = 1669695

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 492     gcaacatacttctccggaaa 511
               ||||||||||||||||||||
Sbjct: 1635235 gcaacatacttctccggaaa 1635216



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>dbj|AP001747.1| Homo sapiens genomic DNA, chromosome 21q, section 91/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    tgttgataacaatgtagcac 142
              ||||||||||||||||||||
Sbjct: 320562 tgttgataacaatgtagcac 320543



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>dbj|AP006210.1| Homo sapiens genomic DNA, chromosome 9, clone:RP11-449F3, complete
             sequence
          Length = 165755

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 216   aagcaaacagcccttcttca 235
             ||||||||||||||||||||
Sbjct: 67320 aagcaaacagcccttcttca 67339



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>gb|AC163497.14| Mus musculus chromosome 1, clone RP24-185N14, complete sequence
          Length = 116121

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 218   gcaaacagcccttcttcagctctc 241
             |||| |||||||||||||||||||
Sbjct: 72051 gcaaccagcccttcttcagctctc 72028



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>dbj|AP001628.1| Homo sapiens genomic DNA, chromosome 21, clone:KB51A8, MX1-D21S171
             region, complete sequence
          Length = 114835

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   tgttgataacaatgtagcac 142
             ||||||||||||||||||||
Sbjct: 82399 tgttgataacaatgtagcac 82380



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>dbj|AB020873.1| Homo sapiens genomic DNA of 9q32 anti-oncogene of flat epitherium
             cancer , segment 5/10
          Length = 100000

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 216   aagcaaacagcccttcttca 235
             ||||||||||||||||||||
Sbjct: 15081 aagcaaacagcccttcttca 15100


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,020,766
Number of Sequences: 3902068
Number of extensions: 6020766
Number of successful extensions: 111789
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111640
Number of HSP's gapped (non-prelim): 143
length of query: 642
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 619
effective length of database: 17,143,297,704
effective search space: 10611701278776
effective search space used: 10611701278776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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