| Clone Name | rbags6k02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK072700.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135G07, full insert sequence Length = 2409 Score = 452 bits (228), Expect = e-124 Identities = 367/412 (89%), Gaps = 1/412 (0%) Strand = Plus / Minus Query: 231 cttcagctctccatgtctgaatcaagaacagaaaggatgttcaaggcagaagacccgatg 290 |||||||| |||||||||||||||||||| || |||||||||||||| ||||| || ||| Sbjct: 2226 cttcagctttccatgtctgaatcaagaactgacaggatgttcaaggcggaagaacctatg 2167 Query: 291 tgggttcccctgacaataccgccataaccaactttgatttggtggcatagaagcaaaatg 350 ||| ||||||| || | ||||||||||||||| || ||||||||||| |||||||| || Sbjct: 2166 tggattcccctaactacaccgccataaccaacatttatttggtggcacagaagcaagata 2107 Query: 351 gcgtcccacagtgctgttcttccctgaagagaaaactgcagtttcttgtcccagtataga 410 || ||||||| ||| ||||||||||||||||||||||||| || ||||||||||| ||| Sbjct: 2106 gcatcccacaatgccgttcttccctgaagagaaaactgcaactttttgtcccagtacaga 2047 Query: 411 gcaaaaactggaggactctgcttgcccacagctagcacaagagctcctgggtgaataatt 470 ||||||| ||||||||||||||||||||||| || | |||||| ||||||||||||| | Sbjct: 2046 gcaaaaatcggaggactctgcttgcccacagccagtataagagcacctgggtgaataact 1987 Query: 471 gctggaacgccagatatcaaagcaacatacttctccggaaacctctctttcggtggaagg 530 ||||||||||| || |||||||||||||||||||| |||||||||||||| |||||||| Sbjct: 1986 gctggaacgccggaaatcaaagcaacatacttctctggaaacctctcttttggtggaaga 1927 Query: 531 attcctagaaataaaggatttttgctggactgggcacccggagtaggaggttggatcaac 590 | |||||||||||||||||||||||| || |||||| || ||||| ||||| |||||||| Sbjct: 1926 actcctagaaataaaggatttttgctagattgggca-ccagagtaagaggtaggatcaac 1868 Query: 591 atgaagcatccactttggatgttcaaggaaagcagcaaacaagtagagaaga 642 |||||||||||| ||||| ||||| |||||||||||||||||||| |||||| Sbjct: 1867 atgaagcatccattttgggtgttcgaggaaagcagcaaacaagtacagaaga 1816
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 313 bits (158), Expect = 4e-82 Identities = 243/270 (90%), Gaps = 1/270 (0%) Strand = Plus / Minus Query: 373 cctgaagagaaaactgcagtttcttgtcccagtatagagcaaaaactggaggactctgct 432 |||||||||||||||||| || ||||||||||| |||||||||| ||||||||||||| Sbjct: 9969847 cctgaagagaaaactgcaactttttgtcccagtacagagcaaaaatcggaggactctgct 9969788 Query: 433 tgcccacagctagcacaagagctcctgggtgaataattgctggaacgccagatatcaaag 492 |||||||||| || | |||||| ||||||||||||| |||||||||||| || ||||||| Sbjct: 9969787 tgcccacagccagtataagagcacctgggtgaataactgctggaacgccggaaatcaaag 9969728 Query: 493 caacatacttctccggaaacctctctttcggtggaaggattcctagaaataaaggatttt 552 ||||||||||||| |||||||||||||| |||||||| | |||||||||||||||||||| Sbjct: 9969727 caacatacttctctggaaacctctcttttggtggaagaactcctagaaataaaggatttt 9969668 Query: 553 tgctggactgggcacccggagtaggaggttggatcaacatgaagcatccactttggatgt 612 |||| || |||||| || ||||| ||||| |||||||||||||||||||| ||||| ||| Sbjct: 9969667 tgctagattgggca-ccagagtaagaggtaggatcaacatgaagcatccattttgggtgt 9969609 Query: 613 tcaaggaaagcagcaaacaagtagagaaga 642 || |||||||||||||||||||| |||||| Sbjct: 9969608 tcgaggaaagcagcaaacaagtacagaaga 9969579 Score = 147 bits (74), Expect = 5e-32 Identities = 128/146 (87%) Strand = Plus / Minus Query: 231 cttcagctctccatgtctgaatcaagaacagaaaggatgttcaaggcagaagacccgatg 290 |||||||| |||||||||||||||||||| || |||||||||||||| ||||| || ||| Sbjct: 9970646 cttcagctttccatgtctgaatcaagaactgacaggatgttcaaggcggaagaacctatg 9970587 Query: 291 tgggttcccctgacaataccgccataaccaactttgatttggtggcatagaagcaaaatg 350 ||| ||||||| || | ||||||||||||||| || ||||||||||| |||||||| || Sbjct: 9970586 tggattcccctaactacaccgccataaccaacatttatttggtggcacagaagcaagata 9970527 Query: 351 gcgtcccacagtgctgttcttccctg 376 || ||||||| ||| ||||||||||| Sbjct: 9970526 gcatcccacaatgccgttcttccctg 9970501
>gb|AC137075.2| Genomic sequence for Oryza sativa, Nipponbare striain, clone OSJNBb0027B12, from chromosome 3, complete sequence Length = 127426 Score = 313 bits (158), Expect = 4e-82 Identities = 243/270 (90%), Gaps = 1/270 (0%) Strand = Plus / Minus Query: 373 cctgaagagaaaactgcagtttcttgtcccagtatagagcaaaaactggaggactctgct 432 |||||||||||||||||| || ||||||||||| |||||||||| ||||||||||||| Sbjct: 19763 cctgaagagaaaactgcaactttttgtcccagtacagagcaaaaatcggaggactctgct 19704 Query: 433 tgcccacagctagcacaagagctcctgggtgaataattgctggaacgccagatatcaaag 492 |||||||||| || | |||||| ||||||||||||| |||||||||||| || ||||||| Sbjct: 19703 tgcccacagccagtataagagcacctgggtgaataactgctggaacgccggaaatcaaag 19644 Query: 493 caacatacttctccggaaacctctctttcggtggaaggattcctagaaataaaggatttt 552 ||||||||||||| |||||||||||||| |||||||| | |||||||||||||||||||| Sbjct: 19643 caacatacttctctggaaacctctcttttggtggaagaactcctagaaataaaggatttt 19584 Query: 553 tgctggactgggcacccggagtaggaggttggatcaacatgaagcatccactttggatgt 612 |||| || |||||| || ||||| ||||| |||||||||||||||||||| ||||| ||| Sbjct: 19583 tgctagattgggca-ccagagtaagaggtaggatcaacatgaagcatccattttgggtgt 19525 Query: 613 tcaaggaaagcagcaaacaagtagagaaga 642 || |||||||||||||||||||| |||||| Sbjct: 19524 tcgaggaaagcagcaaacaagtacagaaga 19495 Score = 147 bits (74), Expect = 5e-32 Identities = 128/146 (87%) Strand = Plus / Minus Query: 231 cttcagctctccatgtctgaatcaagaacagaaaggatgttcaaggcagaagacccgatg 290 |||||||| |||||||||||||||||||| || |||||||||||||| ||||| || ||| Sbjct: 20562 cttcagctttccatgtctgaatcaagaactgacaggatgttcaaggcggaagaacctatg 20503 Query: 291 tgggttcccctgacaataccgccataaccaactttgatttggtggcatagaagcaaaatg 350 ||| ||||||| || | ||||||||||||||| || ||||||||||| |||||||| || Sbjct: 20502 tggattcccctaactacaccgccataaccaacatttatttggtggcacagaagcaagata 20443 Query: 351 gcgtcccacagtgctgttcttccctg 376 || ||||||| ||| ||||||||||| Sbjct: 20442 gcatcccacaatgccgttcttccctg 20417
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 313 bits (158), Expect = 4e-82 Identities = 243/270 (90%), Gaps = 1/270 (0%) Strand = Plus / Minus Query: 373 cctgaagagaaaactgcagtttcttgtcccagtatagagcaaaaactggaggactctgct 432 |||||||||||||||||| || ||||||||||| |||||||||| ||||||||||||| Sbjct: 9967968 cctgaagagaaaactgcaactttttgtcccagtacagagcaaaaatcggaggactctgct 9967909 Query: 433 tgcccacagctagcacaagagctcctgggtgaataattgctggaacgccagatatcaaag 492 |||||||||| || | |||||| ||||||||||||| |||||||||||| || ||||||| Sbjct: 9967908 tgcccacagccagtataagagcacctgggtgaataactgctggaacgccggaaatcaaag 9967849 Query: 493 caacatacttctccggaaacctctctttcggtggaaggattcctagaaataaaggatttt 552 ||||||||||||| |||||||||||||| |||||||| | |||||||||||||||||||| Sbjct: 9967848 caacatacttctctggaaacctctcttttggtggaagaactcctagaaataaaggatttt 9967789 Query: 553 tgctggactgggcacccggagtaggaggttggatcaacatgaagcatccactttggatgt 612 |||| || |||||| || ||||| ||||| |||||||||||||||||||| ||||| ||| Sbjct: 9967788 tgctagattgggca-ccagagtaagaggtaggatcaacatgaagcatccattttgggtgt 9967730 Query: 613 tcaaggaaagcagcaaacaagtagagaaga 642 || |||||||||||||||||||| |||||| Sbjct: 9967729 tcgaggaaagcagcaaacaagtacagaaga 9967700 Score = 147 bits (74), Expect = 5e-32 Identities = 128/146 (87%) Strand = Plus / Minus Query: 231 cttcagctctccatgtctgaatcaagaacagaaaggatgttcaaggcagaagacccgatg 290 |||||||| |||||||||||||||||||| || |||||||||||||| ||||| || ||| Sbjct: 9968767 cttcagctttccatgtctgaatcaagaactgacaggatgttcaaggcggaagaacctatg 9968708 Query: 291 tgggttcccctgacaataccgccataaccaactttgatttggtggcatagaagcaaaatg 350 ||| ||||||| || | ||||||||||||||| || ||||||||||| |||||||| || Sbjct: 9968707 tggattcccctaactacaccgccataaccaacatttatttggtggcacagaagcaagata 9968648 Query: 351 gcgtcccacagtgctgttcttccctg 376 || ||||||| ||| ||||||||||| Sbjct: 9968647 gcatcccacaatgccgttcttccctg 9968622
>gb|AY111496.1| Zea mays CL59287_1 mRNA sequence Length = 643 Score = 293 bits (148), Expect = 4e-76 Identities = 307/362 (84%), Gaps = 1/362 (0%) Strand = Plus / Plus Query: 270 ttcaaggcagaagacccgatgtgggttcccctgacaataccgccataaccaactttgatt 329 ||||||||||| || ||||| ||| |||| || || | ||||||||| ||||| || ||| Sbjct: 218 ttcaaggcagacgaaccgatatggattcctctaaccacaccgccatacccaacgtttatt 277 Query: 330 tggtggcatagaagcaaaatggcgtcccacagtgctgttcttccctgaagagaaaactgc 389 ||||| |||| ||| | |||||| |||||||| ||||||||||||||||||||||| ||| Sbjct: 278 tggtgacataaaagtagaatggcatcccacagagctgttcttccctgaagagaaaattgc 337 Query: 390 agtttcttgtcccagtatagagcaaaaactggaggactctgcttgcccacagctagcaca 449 | |||||||||||||||||||| ||||||| ||||||||| |||||| || | | Sbjct: 338 tgcttcttgtcccagtatagagcnnnnnttggaggattctgcttgctcacagccagtata 397 Query: 450 agagctcctgggtgaataattgctggaacgccagatatcaaagcaacatacttctccgga 509 ||||| ||||||||||||||||||||||| || ||||||| |||||||||||| || || Sbjct: 398 agagcccctgggtgaataattgctggaacacctgatatcagagcaacatacttttctggg 457 Query: 510 aacctctctttcggtggaaggattcctagaaataaaggatttttgctggactgggcaccc 569 ||||||||||| |||||||| | ||| |||||||| ||| ||||||||||| | || Sbjct: 458 aacctctcttttggtggaagaactcccagaaataagggannnnngctggactggg-aacc 516 Query: 570 ggagtaggaggttggatcaacatgaagcatccactttggatgttcaaggaaagcagcaaa 629 ||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 517 agagtacgaggtagggtcaacatgaagcatccattttggatgttcaaggaaagcagcaaa 576 Query: 630 ca 631 || Sbjct: 577 ca 578
>gb|BT014537.1| Lycopersicon esculentum clone 133951F, mRNA sequence Length = 2312 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 354 tcccacagtgctgttcttccctgaagagaaaactgcagtttcttgtcccagtatagagca 413 ||||| ||||||||||||||||| ||||||||||| | |||| ||||||||||| ||| Sbjct: 2028 tcccagagtgctgttcttccctggagagaaaactgaggcatcttatcccagtatagggca 1969 Query: 414 aaaactggaggactctgcttgcccacagc 442 |||||||| ||| | ||||| || ||||| Sbjct: 1968 aaaactgggggattttgctttccaacagc 1940 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 583 ggatcaacatgaagcatccactttggatgttcaaggaaagca 624 ||||||||||| |||||||||||||| || || ||||||||| Sbjct: 1800 ggatcaacatgtagcatccactttgggtgctccaggaaagca 1759
>ref|NM_100671.2| Arabidopsis thaliana unknown protein AT1G07970 mRNA, complete cds Length = 2424 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 353 gtcccacagtgctgttcttccctgaagagaaaactgcagtttcttgtcccagta 406 |||||| || ||||||||||||||||||| |||||||| |||||| |||||||| Sbjct: 2067 gtcccatagcgctgttcttccctgaagagtaaactgcactttcttatcccagta 2014
>gb|AC152176.5| Medicago truncatula clone mth2-65c4, complete sequence Length = 161536 Score = 58.0 bits (29), Expect = 4e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 580 gttggatcaacatgaagcatccactttggatgttcaaggaaagca 624 |||| ||| ||||| |||||||||||||||||||| ||||||||| Sbjct: 24385 gttgcatccacatgtagcatccactttggatgttctaggaaagca 24341 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Minus Query: 373 cctgaagagaaaactgcagtttcttgtcccagtatagagcaaaaactggaggactctgct 432 |||||||||||| |||||| ||||| |||||||| | ||||||| ||| |||| ||||| Sbjct: 24591 cctgaagagaaagctgcagcttcttatcccagtacaaggcaaaaattgggggaccctgct 24532 Query: 433 t 433 | Sbjct: 24531 t 24531 Score = 44.1 bits (22), Expect = 0.56 Identities = 67/82 (81%) Strand = Plus / Minus Query: 297 cccctgacaataccgccataaccaactttgatttggtggcatagaagcaaaatggcgtcc 356 ||||| || ||||| ||||| |||||||| || | || || |||| ||| |||| ||| Sbjct: 24834 cccctaacgatacctccatacccaactttaatcttatgacacagaatcaagatggaatcc 24775 Query: 357 cacagtgctgttcttccctgaa 378 || ||||||||||||||||||| Sbjct: 24774 caaagtgctgttcttccctgaa 24753
>gb|AY428924.1| Carica papaya isolate cpsm87 sex hermaphrodite chromosome Y male specific sequence Length = 380 Score = 50.1 bits (25), Expect = 0.009 Identities = 40/45 (88%) Strand = Plus / Minus Query: 332 gtggcatagaagcaaaatggcgtcccacagtgctgttcttccctg 376 |||||||| ||||||||||| ||||| | ||||||||||||||| Sbjct: 372 gtggcataaaagcaaaatggaatcccataatgctgttcttccctg 328
>gb|AC153364.4| Mus musculus BAC clone RP23-35J21 from chromosome 10, complete sequence Length = 231668 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 cagtcataattaatcccctta 175 ||||||||||||||||||||| Sbjct: 116986 cagtcataattaatcccctta 117006
>gb|AC004797.1|AC004797 Homo sapiens chromosome 17, clone hRPC.62_O_9, complete sequence Length = 113891 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 cctggcaagcaaacagccctt 230 ||||||||||||||||||||| Sbjct: 82967 cctggcaagcaaacagccctt 82947
>gb|AC132134.2| Mus musculus BAC clone RP23-267P6 from chromosome 5, complete sequence Length = 227078 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 gttcaagacattgctggtgt 125 |||||||||||||||||||| Sbjct: 188053 gttcaagacattgctggtgt 188034
>gb|AC116387.7| Mus musculus chromosome 18, clone RP23-37P9, complete sequence Length = 217116 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 623 cagcaaacaagtagagaaga 642 |||||||||||||||||||| Sbjct: 178706 cagcaaacaagtagagaaga 178725
>gb|AC124507.4| Mus musculus BAC clone RP23-430B14 from chromosome 7, complete sequence Length = 204278 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 actcagtaataaatttcagg 64 |||||||||||||||||||| Sbjct: 177274 actcagtaataaatttcagg 177293
>gb|AC123033.4| Mus musculus BAC clone RP24-482F14 from chromosome 5, complete sequence Length = 180745 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 gttcaagacattgctggtgt 125 |||||||||||||||||||| Sbjct: 48296 gttcaagacattgctggtgt 48277
>gb|AC080068.6| Homo sapiens BAC clone RP11-97L4 from 7, complete sequence Length = 62623 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 259 cagaaaggatgttcaaggcagaag 282 |||||||||||||| ||||||||| Sbjct: 336 cagaaaggatgttctaggcagaag 359
>gb|AC007090.3| Homo sapiens PAC clone RP4-701O19 from 7, complete sequence Length = 68229 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 259 cagaaaggatgttcaaggcagaag 282 |||||||||||||| ||||||||| Sbjct: 66570 cagaaaggatgttctaggcagaag 66593
>gb|AC117810.8| Mus musculus chromosome 18, clone RP24-571D2, complete sequence Length = 207527 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 623 cagcaaacaagtagagaaga 642 |||||||||||||||||||| Sbjct: 14945 cagcaaacaagtagagaaga 14964
>gb|AC084821.26| Mus musculus strain C57BL/6J clone rp23-395h6 map 1, complete sequence Length = 211776 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 gcaaacagcccttcttcagctctc 241 |||| ||||||||||||||||||| Sbjct: 197283 gcaaccagcccttcttcagctctc 197260
>emb|AL691420.13| Human DNA sequence from clone RP11-352C6 on chromosome 9, complete sequence Length = 175726 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 aagcaaacagcccttcttca 235 |||||||||||||||||||| Sbjct: 165265 aagcaaacagcccttcttca 165284
>gb|AC104831.3| Homo sapiens 3 BAC RP11-451G4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 115000 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 atacaactcagtaataaatttcag 63 |||||||||||| ||||||||||| Sbjct: 113404 atacaactcagtcataaatttcag 113381
>gb|AC106724.3| Homo sapiens 3 BAC RP11-270G15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162831 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 atacaactcagtaataaatttcag 63 |||||||||||| ||||||||||| Sbjct: 187 atacaactcagtcataaatttcag 164
>gb|AC083815.17|AC083815 Mus musculus 11 BAC RP23-270L8 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 173810 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 cacagctagcacaagagctc 456 |||||||||||||||||||| Sbjct: 94462 cacagctagcacaagagctc 94443
>gb|AY007567.1| Mus musculus cardiotrophin-1 gene, promoter and complete cds Length = 9713 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 actcagtaataaatttcagg 64 |||||||||||||||||||| Sbjct: 8076 actcagtaataaatttcagg 8095
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome Length = 1669695 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 492 gcaacatacttctccggaaa 511 |||||||||||||||||||| Sbjct: 1635235 gcaacatacttctccggaaa 1635216
>dbj|AP001747.1| Homo sapiens genomic DNA, chromosome 21q, section 91/105 Length = 340000 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 tgttgataacaatgtagcac 142 |||||||||||||||||||| Sbjct: 320562 tgttgataacaatgtagcac 320543
>dbj|AP006210.1| Homo sapiens genomic DNA, chromosome 9, clone:RP11-449F3, complete sequence Length = 165755 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 aagcaaacagcccttcttca 235 |||||||||||||||||||| Sbjct: 67320 aagcaaacagcccttcttca 67339
>gb|AC163497.14| Mus musculus chromosome 1, clone RP24-185N14, complete sequence Length = 116121 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 gcaaacagcccttcttcagctctc 241 |||| ||||||||||||||||||| Sbjct: 72051 gcaaccagcccttcttcagctctc 72028
>dbj|AP001628.1| Homo sapiens genomic DNA, chromosome 21, clone:KB51A8, MX1-D21S171 region, complete sequence Length = 114835 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 tgttgataacaatgtagcac 142 |||||||||||||||||||| Sbjct: 82399 tgttgataacaatgtagcac 82380
>dbj|AB020873.1| Homo sapiens genomic DNA of 9q32 anti-oncogene of flat epitherium cancer , segment 5/10 Length = 100000 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 aagcaaacagcccttcttca 235 |||||||||||||||||||| Sbjct: 15081 aagcaaacagcccttcttca 15100 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,020,766 Number of Sequences: 3902068 Number of extensions: 6020766 Number of successful extensions: 111789 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 111640 Number of HSP's gapped (non-prelim): 143 length of query: 642 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 619 effective length of database: 17,143,297,704 effective search space: 10611701278776 effective search space used: 10611701278776 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)