ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6k01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016619.1| Zea mays clone Contig452 mRNA sequence 373 e-100
2gb|AY104402.1| Zea mays PCO137047 mRNA sequence 373 e-100
3ref|XM_464667.1| Oryza sativa (japonica cultivar-group), mRNA 323 4e-85
4dbj|AK060032.1| Oryza sativa (japonica cultivar-group) cDNA clon... 323 4e-85
5dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clon... 315 1e-82
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 141 4e-30
7dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic D... 141 4e-30
8gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 44 0.62
9ref|XM_482249.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.4
10gb|AC132262.2| Mus musculus chromosome 5 clone RP24-370J24, comp... 42 2.4
11ref|XM_450615.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.4
12ref|XM_450614.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.4
13gb|BT013806.1| Lycopersicon esculentum clone 132727F, mRNA sequence 42 2.4
14gb|AC104101.5| Mus musculus BAC clone RP24-377D2 from chromosome... 42 2.4
15gb|AC113506.12| Mus musculus chromosome 9, clone RP23-373O2, com... 42 2.4
16ref|XM_763899.1| Giardia lamblia ATCC 50803 hypothetical protein... 42 2.4
17emb|AL512785.7| Human DNA sequence from clone RP11-565P22 on chr... 42 2.4
18ref|NM_008829.1| Mus musculus progesterone receptor (Pgr), mRNA 42 2.4
19dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 42 2.4
20dbj|AK142629.1| Mus musculus 10 days lactation, adult female mam... 42 2.4
21ref|NM_022847.1| Rattus norvegicus progesterone receptor (Pgr), ... 42 2.4
22dbj|AK054117.1| Mus musculus 2 days pregnant adult female oviduc... 42 2.4
23dbj|AK036862.1| Mus musculus adult female vagina cDNA, RIKEN ful... 42 2.4
24dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
25ref|XM_579464.1| PREDICTED: Rattus norvegicus progesterone recep... 42 2.4
26dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
27dbj|AK120068.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.4
28dbj|AK024942.1| Homo sapiens cDNA: FLJ21289 fis, clone COL01938 42 2.4
29dbj|AK068512.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.4
30dbj|AK068165.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.4
31gb|M68915.1|MUSPR Mouse progesterone receptor (PR) mRNA, complet... 42 2.4
32gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 42 2.4
33gb|L16922.1|RATPRGRECB Rat progesteron receptor gene, complete cds 42 2.4
34gb|AC150242.3| Rhinolophus ferrumequinum clone VMRC7-331J24, com... 40 9.6
35gb|AC116472.14| Mus musculus chromosome 7, clone RP23-384B23, co... 40 9.6
36gb|AC117621.7| Mus musculus chromosome 8, clone RP23-114B10, com... 40 9.6
37emb|CR956428.10| Pig DNA sequence from clone PigE-259M5 on chrom... 40 9.6
38gb|AC114995.7| Mus musculus chromosome 8, clone RP23-171P5, comp... 40 9.6
39emb|AL162389.21| Human DNA sequence from clone RP11-380I20 on ch... 40 9.6
40gb|AC155227.3| Rhinolophus ferrumequinum clone VMRC7-4K1, comple... 40 9.6
41emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 i... 40 9.6
42gb|BC099360.1| Xenopus laevis cDNA clone IMAGE:6877290, partial cds 40 9.6
43gb|AY527062.1| Mytilus edulis 18S ribosomal RNA gene, partial se... 40 9.6
44gb|AC011484.7| Homo sapiens chromosome 19 clone CTB-158D10, comp... 40 9.6
45dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
46dbj|AB201231.1| Musculista senhousia gene for 18S ribosomal RNA,... 40 9.6
47gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold 40 9.6
48gb|AF124207.1|AF124207 Musculus senhousei 18S ribosomal RNA gene... 40 9.6
49gb|AF124206.1|AF124206 Musculus discors 18S ribosomal RNA gene, ... 40 9.6
50gb|L33448.1|MSLSRRNAA Mytilus edulis 18S small subunit ribosomal... 40 9.6
51gb|L33449.1|MSLSRRNAB Mytilus californianus 18S small subunit ri... 40 9.6
52gb|L33451.1|MSLSRRNAC Mytilus galloprovincialis isolate Morgat, ... 40 9.6
53gb|L33453.1|MSLSRRNAE Mytilus trossulus strain Pacific strain 1 ... 40 9.6
54gb|L33454.1|MSLSRRNAF Mytilus trossulus strain Pacific strain 2 ... 40 9.6
55gb|L33455.1|MSLSRRNAG Mytilus trossulus strain Pacific strain 3 ... 40 9.6
56dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
57emb|AL929222.6| Zebrafish DNA sequence from clone DKEY-31N5, com... 40 9.6
58emb|X78814.1|NPPSY N.pseudonarcissus mRNA for phytoene synthase 40 9.6
59gb|AC174163.2| Gallus gallus BAC clone CH261-69O1 from chromosom... 40 9.6
60gb|DQ310715.1| Mytella strigata 18S ribosomal RNA gene, partial ... 40 9.6
61emb|AL844846.11| Mouse DNA sequence from clone RP23-358I19 on ch... 40 9.6
62emb|X90960.1|AN18SRRNA A.noae 18S ribosomal RNA gene 40 9.6
63emb|X91403.1|AGEL18S A.gelatinosum 18S ribosomal RNA gene 40 9.6
64gb|L24490.1|MSLMRNAB Mytilus trossulus 18S ribosomal RNA (18S rRNA) 40 9.6
65gb|L24489.1|MSLMRNAA Mytilus edulis 18S ribosomal RNA (18SrRNA) 40 9.6 
>gb|BT016619.1| Zea mays clone Contig452 mRNA sequence
          Length = 1911

 Score =  373 bits (188), Expect = e-100
 Identities = 505/608 (83%), Gaps = 2/608 (0%)
 Strand = Plus / Minus

                                                                        
Query: 97   tgcttgtgagcgagctccttgagaacatttccgaggtcggactcgcccttggtgctcttg 156
            ||||||| ||| |||| |||||||||||| |||||||| | |||| ||||| || |||||
Sbjct: 1769 tgcttgtaagccagcttcttgagaacattgccgaggtcagcctcggccttgatgttcttg 1710

                                                                        
Query: 157  acccacttggccttgatcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctc 216
            ||||| | ||| ||||||||||||||||||||||||||| |||| |||||||||||| ||
Sbjct: 1709 acccattgggcattgatcctcaccctctcgatgctctgcctcacagtcctcgcgatgttc 1650

                                                                        
Query: 217  gccttggtcctgctcttgaagaactcctctgcctcgtcacccttctcgtctgtggcgagc 276
            |||||||| ||||||||||| |||||||| ||||| ||||| |  || || ||||| || 
Sbjct: 1649 gccttggttctgctcttgaaaaactcctccgcctcatcaccatgttcatcggtggccagt 1590

                                                                        
Query: 277  ggtgagacagtgacggtgatgaaataggtgagcaggtgtccagtgaaggtctctgctatg 336
            || |||||||| | | ||| |||||||||||||||   ||||| | |||   |   ||||
Sbjct: 1589 ggcgagacagttatgttgacgaaataggtgagcagagttccagagtaggctcccaatatg 1530

                                                                        
Query: 337  tagtcccagttttccttcaaccatgtccatgccacctcatgcgctgctgcagtcactcca 396
            || |||||||||||||||| ||||  |||||| ||||| || ||  ||| | |||| || 
Sbjct: 1529 taatcccagttttccttcagccattgccatgctacctcgtgtgcccctgaactcacccct 1470

                                                                        
Query: 397  cggagcacaaatatgcaatcctgattccttacctcagaagatagcaagaaattcagcgct 456
            |  |||| ||||||    ||||||||||| |||||||  || |  | ||||||||   ||
Sbjct: 1469 cttagcaaaaatattgcgtcctgattcctcacctcaggtgacaatatgaaattcaatact 1410

                                                                        
Query: 457  tcacgcacaacatcagggtcaggggatgatgccagagaaccaagaacacggactttttcc 516
            ||||| ||||||||| |||||||||||||||||| |||||| |  ||||| ||||| |||
Sbjct: 1409 tcacggacaacatcatggtcaggggatgatgccaaagaacctaacacacgaactttctcc 1350

                                                                        
Query: 517  tggctcagatcagtttccctgtaaatcttcagaagagattcatagccacttctgtttgac 576
            ||||| ||||| |||||||| || ||| |||| || |||||||||||| || ||||||| 
Sbjct: 1349 tggcttagatcggtttccctatatatcctcagtagtgattcatagccagttttgtttgat 1290

                                                                        
Query: 577  ttgttcactgtctgcatcagagcaacatatgcagcctttcggacatctggtggggaggag 636
            ||| ||||||||||||||| |||||||||||| |||||||| ||||| ||  ||||||| 
Sbjct: 1289 ttgctcactgtctgcatcaaagcaacatatgctgcctttcgaacatc-gggagggagga- 1232

                                                                        
Query: 637  gtggcgtctctctgtcttccagaaagacattaaatcgacgaacagcctcagctatggtag 696
            |||| ||||||||||||||||||||||||||||||||||||||||| |||  ||||||||
Sbjct: 1231 gtggtgtctctctgtcttccagaaagacattaaatcgacgaacagcttcatttatggtag 1172

                    
Query: 697  cctgatgg 704
            ||| ||||
Sbjct: 1171 cctcatgg 1164
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>gb|AY104402.1| Zea mays PCO137047 mRNA sequence
          Length = 2125

 Score =  373 bits (188), Expect = e-100
 Identities = 505/608 (83%), Gaps = 2/608 (0%)
 Strand = Plus / Minus

                                                                        
Query: 97   tgcttgtgagcgagctccttgagaacatttccgaggtcggactcgcccttggtgctcttg 156
            ||||||| ||| |||| |||||||||||| |||||||| | |||| ||||| || |||||
Sbjct: 1807 tgcttgtaagccagcttcttgagaacattgccgaggtcagcctcggccttgatgttcttg 1748

                                                                        
Query: 157  acccacttggccttgatcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctc 216
            ||||| | ||| ||||||||||||||||||||||||||| |||| |||||||||||| ||
Sbjct: 1747 acccattgggcattgatcctcaccctctcgatgctctgcctcacagtcctcgcgatgttc 1688

                                                                        
Query: 217  gccttggtcctgctcttgaagaactcctctgcctcgtcacccttctcgtctgtggcgagc 276
            |||||||| ||||||||||| |||||||| ||||| ||||| |  || || ||||| || 
Sbjct: 1687 gccttggttctgctcttgaaaaactcctccgcctcatcaccatgttcatcggtggccagt 1628

                                                                        
Query: 277  ggtgagacagtgacggtgatgaaataggtgagcaggtgtccagtgaaggtctctgctatg 336
            || |||||||| | | ||| |||||||||||||||   ||||| | |||   |   ||||
Sbjct: 1627 ggcgagacagttatgttgacgaaataggtgagcagagttccagagtaggctcccaatatg 1568

                                                                        
Query: 337  tagtcccagttttccttcaaccatgtccatgccacctcatgcgctgctgcagtcactcca 396
            || |||||||||||||||| ||||  |||||| ||||| || ||  ||| | |||| || 
Sbjct: 1567 taatcccagttttccttcagccattgccatgctacctcgtgtgcccctgaactcacccct 1508

                                                                        
Query: 397  cggagcacaaatatgcaatcctgattccttacctcagaagatagcaagaaattcagcgct 456
            |  |||| ||||||    ||||||||||| |||||||  || |  | ||||||||   ||
Sbjct: 1507 cttagcaaaaatattgcgtcctgattcctcacctcaggtgacaatatgaaattcaatact 1448

                                                                        
Query: 457  tcacgcacaacatcagggtcaggggatgatgccagagaaccaagaacacggactttttcc 516
            ||||| ||||||||| |||||||||||||||||| |||||| |  ||||| ||||| |||
Sbjct: 1447 tcacggacaacatcatggtcaggggatgatgccaaagaacctaacacacgaactttctcc 1388

                                                                        
Query: 517  tggctcagatcagtttccctgtaaatcttcagaagagattcatagccacttctgtttgac 576
            ||||| ||||| |||||||| || | | |||| || |||||||||||| || ||||||| 
Sbjct: 1387 tggcttagatcggtttccctatataccctcagtagtgattcatagccagttttgtttgat 1328

                                                                        
Query: 577  ttgttcactgtctgcatcagagcaacatatgcagcctttcggacatctggtggggaggag 636
            ||||||||||||||||||| |||||||||||| |||||||| ||||| ||  ||||||| 
Sbjct: 1327 ttgttcactgtctgcatcaaagcaacatatgctgcctttcgaacatc-gggagggagga- 1270

                                                                        
Query: 637  gtggcgtctctctgtcttccagaaagacattaaatcgacgaacagcctcagctatggtag 696
            |||| ||||||||||||||||||||||||||||||||||||||||| |||  ||||||||
Sbjct: 1269 gtggtgtctctctgtcttccagaaagacattaaatcgacgaacagcttcatttatggtag 1210

                    
Query: 697  cctgatgg 704
            ||| ||||
Sbjct: 1209 cctcatgg 1202
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>ref|XM_464667.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3020

 Score =  323 bits (163), Expect = 4e-85
 Identities = 427/515 (82%)
 Strand = Plus / Minus

                                                                        
Query: 112  tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 171
            |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 2723 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 2664

                                                                        
Query: 172  atcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctcgccttggtcctgctc 231
            |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 2663 atcctcactctctcgatgctctgcttcaccgtcctcgcgatgttggccttcgtcctgctc 2604

                                                                        
Query: 232  ttgaagaactcctctgcctcgtcacccttctcgtctgtggcgagcggtgagacagtgacg 291
            |||||||||||||| || ||||| ||| | || || |||   ||||||||||| |||  |
Sbjct: 2603 ttgaagaactcctccgcgtcgtcgcccatttcatcggtgcgcagcggtgagacggtggtg 2544

                                                                        
Query: 292  gtgatgaaataggtgagcaggtgtccagtgaaggtctctgctatgtagtcccagttttcc 351
            |  | |||||||||||| ||   ||||| |||||| ||||  ||||||||||| ||||||
Sbjct: 2543 gaaacgaaataggtgagaagagttccagagaaggtgtctgaaatgtagtcccacttttcc 2484

                                                                        
Query: 352  ttcaaccatgtccatgccacctcatgcgctgctgcagtcactccacggagcacaaatatg 411
            ||||||||||||||||||||||||||  | ||||||   ||||| |  |||| |||||| 
Sbjct: 2483 ttcaaccatgtccatgccacctcatgtcccgctgcaccgactcctctaagcaaaaatata 2424

                                                                        
Query: 412  caatcctgattccttacctcagaagatagcaagaaattcagcgcttcacgcacaacatca 471
             | ||||||||||| |||||||  || |||| ||| | ||| |  ||||| |||||||||
Sbjct: 2423 gagtcctgattcctcacctcaggtgacagcatgaagtccagtgtatcacgaacaacatca 2364

                                                                        
Query: 472  gggtcaggggatgatgccagagaaccaagaacacggactttttcctggctcagatcagtt 531
            || |||||| | ||||| |||||||| | ||  | |||||||||||||||||||||||||
Sbjct: 2363 ggatcagggcaagatgctagagaacctaaaattctgactttttcctggctcagatcagtt 2304

                                                                        
Query: 532  tccctgtaaatcttcagaagagattcatagccacttctgtttgacttgttcactgtctgc 591
            ||  | || |||||||  || |||||||||||   ||||||||| |||||||||||||||
Sbjct: 2303 tctttatagatcttcaatagtgattcatagccggctctgtttgatttgttcactgtctgc 2244

                                               
Query: 592  atcagagcaacatatgcagcctttcggacatctgg 626
            |||| |||||||||||| |||||||| ||||||||
Sbjct: 2243 atcaaagcaacatatgccgcctttcgaacatctgg 2209
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>dbj|AK060032.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H06, full
           insert sequence
          Length = 977

 Score =  323 bits (163), Expect = 4e-85
 Identities = 427/515 (82%)
 Strand = Plus / Minus

                                                                       
Query: 112 tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 171
           |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 680 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 621

                                                                       
Query: 172 atcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctcgccttggtcctgctc 231
           |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 620 atcctcactctctcgatgctctgcttcaccgtcctcgcgatgttggccttcgtcctgctc 561

                                                                       
Query: 232 ttgaagaactcctctgcctcgtcacccttctcgtctgtggcgagcggtgagacagtgacg 291
           |||||||||||||| || ||||| ||| | || || |||   ||||||||||| |||  |
Sbjct: 560 ttgaagaactcctccgcgtcgtcgcccatttcatcggtgcgcagcggtgagacggtggtg 501

                                                                       
Query: 292 gtgatgaaataggtgagcaggtgtccagtgaaggtctctgctatgtagtcccagttttcc 351
           |  | |||||||||||| ||   ||||| |||||| ||||  ||||||||||| ||||||
Sbjct: 500 gaaacgaaataggtgagaagagttccagagaaggtgtctgaaatgtagtcccacttttcc 441

                                                                       
Query: 352 ttcaaccatgtccatgccacctcatgcgctgctgcagtcactccacggagcacaaatatg 411
           ||||||||||||||||||||||||||  | ||||||   ||||| |  |||| |||||| 
Sbjct: 440 ttcaaccatgtccatgccacctcatgtcccgctgcaccgactcctctaagcaaaaatata 381

                                                                       
Query: 412 caatcctgattccttacctcagaagatagcaagaaattcagcgcttcacgcacaacatca 471
            | ||||||||||| |||||||  || |||| ||| | ||| |  ||||| |||||||||
Sbjct: 380 gagtcctgattcctcacctcaggtgacagcatgaagtccagtgtatcacgaacaacatca 321

                                                                       
Query: 472 gggtcaggggatgatgccagagaaccaagaacacggactttttcctggctcagatcagtt 531
           || |||||| | ||||| |||||||| | ||  | |||||||||||||||||||||||||
Sbjct: 320 ggatcagggcaagatgctagagaacctaaaattctgactttttcctggctcagatcagtt 261

                                                                       
Query: 532 tccctgtaaatcttcagaagagattcatagccacttctgtttgacttgttcactgtctgc 591
           ||  | || |||||||  || |||||||||||   ||||||||| |||||||||||||||
Sbjct: 260 tctttatagatcttcaatagtgattcatagccggctctgtttgatttgttcactgtctgc 201

                                              
Query: 592 atcagagcaacatatgcagcctttcggacatctgg 626
           |||| |||||||||||| |||||||| ||||||||
Sbjct: 200 atcaaagcaacatatgccgcctttcgaacatctgg 166
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>dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089H24, full
            insert sequence
          Length = 3020

 Score =  315 bits (159), Expect = 1e-82
 Identities = 426/515 (82%)
 Strand = Plus / Minus

                                                                        
Query: 112  tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 171
            |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 2723 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 2664

                                                                        
Query: 172  atcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctcgccttggtcctgctc 231
            |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 2663 atcctcactctctcgatgctctgcttcaccgtcctcgcgatgttggccttcgtcctgctc 2604

                                                                        
Query: 232  ttgaagaactcctctgcctcgtcacccttctcgtctgtggcgagcggtgagacagtgacg 291
            |||||||||||||| || ||||| ||| | || || |||   ||||||||||| |||  |
Sbjct: 2603 ttgaagaactcctccgcgtcgtcgcccatttcatcggtgcgcagcggtgagacggtggtg 2544

                                                                        
Query: 292  gtgatgaaataggtgagcaggtgtccagtgaaggtctctgctatgtagtcccagttttcc 351
            |  | |||||||||||| ||   ||||| |||||| ||||  ||||||||||| ||||||
Sbjct: 2543 gaaacgaaataggtgagaagagttccagagaaggtgtctgaaatgtagtcccacttttcc 2484

                                                                        
Query: 352  ttcaaccatgtccatgccacctcatgcgctgctgcagtcactccacggagcacaaatatg 411
            ||||||||||||||||||||||||||  | ||||||   ||||| |  |||| |||||| 
Sbjct: 2483 ttcaaccatgtccatgccacctcatgtcccgctgcaccgactcctctaagcaaaaatata 2424

                                                                        
Query: 412  caatcctgattccttacctcagaagatagcaagaaattcagcgcttcacgcacaacatca 471
             | ||||||||||| |||||||  || |||| ||| | ||| |  ||||| |||||||||
Sbjct: 2423 gagtcctgattcctcacctcaggtgacagcatgaagtccagtgtatcacgaacaacatca 2364

                                                                        
Query: 472  gggtcaggggatgatgccagagaaccaagaacacggactttttcctggctcagatcagtt 531
            || |||||| | ||||| |||||||| | ||  | |||||||||||||||||||||||||
Sbjct: 2363 ggatcagggcaagatgctagagaacctaaaattctgactttttcctggctcagatcagtt 2304

                                                                        
Query: 532  tccctgtaaatcttcagaagagattcatagccacttctgtttgacttgttcactgtctgc 591
            ||  | || |||||||  || |||||||||||   ||||||||| |||||||||||||||
Sbjct: 2303 tctttatagatcttcaatagtgattcatagccggctctgtttgatttgttcactgtctgc 2244

                                               
Query: 592  atcagagcaacatatgcagcctttcggacatctgg 626
            |||| |||||||||||| |||| ||| ||||||||
Sbjct: 2243 atcaaagcaacatatgccgcctatcgaacatctgg 2209
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  141 bits (71), Expect = 4e-30
 Identities = 125/143 (87%)
 Strand = Plus / Minus

                                                                           
Query: 112     tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 171
               |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 6605319 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 6605260

                                                                           
Query: 172     atcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctcgccttggtcctgctc 231
               |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 6605259 atcctcactctctcgatgctctgcttcaccgtcctcgcgatgttggccttcgtcctgctc 6605200

                                      
Query: 232     ttgaagaactcctctgcctcgtc 254
               |||||||||||||| || |||||
Sbjct: 6605199 ttgaagaactcctccgcgtcgtc 6605177



 Score =  109 bits (55), Expect = 1e-20
 Identities = 94/107 (87%)
 Strand = Plus / Minus

                                                                           
Query: 507     gactttttcctggctcagatcagtttccctgtaaatcttcagaagagattcatagccact 566
               |||||||||||||||||||||||||||  | || |||||||  || |||||||||||   
Sbjct: 6604543 gactttttcctggctcagatcagtttctttatagatcttcaatagtgattcatagccggc 6604484

                                                              
Query: 567     tctgtttgacttgttcactgtctgcatcagagcaacatatgcagcct 613
               ||||||||| ||||||||||||||||||| |||||||||||| ||||
Sbjct: 6604483 tctgtttgatttgttcactgtctgcatcaaagcaacatatgccgcct 6604437



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                           
Query: 350     ccttcaaccatgtccatgccacctcatg 377
               ||||||||||||||||||||||||||||
Sbjct: 6604903 ccttcaaccatgtccatgccacctcatg 6604876



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                        
Query: 457     tcacgcacaacatcagggtcaggggatgatgccagagaacc 497
               ||||| ||||||||||| |||||| | ||||| ||||||||
Sbjct: 6604695 tcacgaacaacatcaggatcagggcaagatgctagagaacc 6604655



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                       
Query: 297     gaaataggtgagcaggtgtccagtgaaggtctctgctatgtagtcccagttttcct 352
               |||||||||||| ||   ||||| |||||| ||||  ||||||||||| |||||||
Sbjct: 6605039 gaaataggtgagaagagttccagagaaggtgtctgaaatgtagtcccacttttcct 6604984
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>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0027A02
          Length = 140402

 Score =  141 bits (71), Expect = 4e-30
 Identities = 125/143 (87%)
 Strand = Plus / Minus

                                                                         
Query: 112   tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 171
             |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 39694 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 39635

                                                                         
Query: 172   atcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctcgccttggtcctgctc 231
             |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 39634 atcctcactctctcgatgctctgcttcaccgtcctcgcgatgttggccttcgtcctgctc 39575

                                    
Query: 232   ttgaagaactcctctgcctcgtc 254
             |||||||||||||| || |||||
Sbjct: 39574 ttgaagaactcctccgcgtcgtc 39552



 Score =  109 bits (55), Expect = 1e-20
 Identities = 94/107 (87%)
 Strand = Plus / Minus

                                                                         
Query: 507   gactttttcctggctcagatcagtttccctgtaaatcttcagaagagattcatagccact 566
             |||||||||||||||||||||||||||  | || |||||||  || |||||||||||   
Sbjct: 38918 gactttttcctggctcagatcagtttctttatagatcttcaatagtgattcatagccggc 38859

                                                            
Query: 567   tctgtttgacttgttcactgtctgcatcagagcaacatatgcagcct 613
             ||||||||| ||||||||||||||||||| |||||||||||| ||||
Sbjct: 38858 tctgtttgatttgttcactgtctgcatcaaagcaacatatgccgcct 38812



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                         
Query: 350   ccttcaaccatgtccatgccacctcatg 377
             ||||||||||||||||||||||||||||
Sbjct: 39278 ccttcaaccatgtccatgccacctcatg 39251



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 457   tcacgcacaacatcagggtcaggggatgatgccagagaacc 497
             ||||| ||||||||||| |||||| | ||||| ||||||||
Sbjct: 39070 tcacgaacaacatcaggatcagggcaagatgctagagaacc 39030



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                     
Query: 297   gaaataggtgagcaggtgtccagtgaaggtctctgctatgtagtcccagttttcct 352
             |||||||||||| ||   ||||| |||||| ||||  ||||||||||| |||||||
Sbjct: 39414 gaaataggtgagaagagttccagagaaggtgtctgaaatgtagtcccacttttcct 39359
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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 218     ccttggtcctgctcttgaagaa 239
               ||||||||||||||||||||||
Sbjct: 1878602 ccttggtcctgctcttgaagaa 1878581
to top
>ref|XM_482249.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2685

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 340  tcccagttttccttcaaccatgtccatgc 368
            |||||||||||||||||||| | ||||||
Sbjct: 2432 tcccagttttccttcaaccaggcccatgc 2404
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>gb|AC132262.2| Mus musculus chromosome 5 clone RP24-370J24, complete sequence
          Length = 176466

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 423   ccttacctcagaagatagcaa 443
             |||||||||||||||||||||
Sbjct: 62103 ccttacctcagaagatagcaa 62123
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>ref|XM_450615.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2622

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 340  tcccagttttccttcaaccatgtccatgc 368
            |||||||||||||||||||| | ||||||
Sbjct: 2372 tcccagttttccttcaaccaggaccatgc 2344
to top
>ref|XM_450614.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2984

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 159  ccacttggccttgatcctcaccctctcgatgctctgcttca 199
            |||| |||| ||||||  ||||||||||| |||||||||||
Sbjct: 2548 ccacctggcgttgatcagcaccctctcgaggctctgcttca 2508



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 340  tcccagttttccttcaaccatgtccatgc 368
            |||||||||||||||||||| | ||||||
Sbjct: 2364 tcccagttttccttcaaccaggaccatgc 2336
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>gb|BT013806.1| Lycopersicon esculentum clone 132727F, mRNA sequence
          Length = 2861

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 178  accctctcgatgctctgcttcaccgtcct 206
            |||||||| ||||||||||||| ||||||
Sbjct: 2564 accctctcaatgctctgcttcaacgtcct 2536
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>gb|AC104101.5| Mus musculus BAC clone RP24-377D2 from chromosome 5, complete sequence
          Length = 185414

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 423    ccttacctcagaagatagcaa 443
              |||||||||||||||||||||
Sbjct: 126672 ccttacctcagaagatagcaa 126652
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>gb|AC113506.12| Mus musculus chromosome 9, clone RP23-373O2, complete sequence
          Length = 171170

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 418    tgattccttacctcagaagat 438
              |||||||||||||||||||||
Sbjct: 114804 tgattccttacctcagaagat 114824
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>ref|XM_763899.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_180_10079_9540) partial mRNA
          Length = 540

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 231 cttgaagaactcctctgcctc 251
           |||||||||||||||||||||
Sbjct: 132 cttgaagaactcctctgcctc 152
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>emb|AL512785.7| Human DNA sequence from clone RP11-565P22 on chromosome 1 Contains two
             novel genes, the 3' end of the gene for C-terminal PDZ
             domain ligand of neuronal nitric oxide synthase (CAPON), a
             novel gene (LOC284680), the EAT2 gene for SH2
             domain-containing molecule EAT2 and a CpG island, complete
             sequence
          Length = 116882

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 620   catctggtggggaggaggtgg 640
             |||||||||||||||||||||
Sbjct: 48526 catctggtggggaggaggtgg 48546
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>ref|NM_008829.1| Mus musculus progesterone receptor (Pgr), mRNA
          Length = 2794

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 418  tgattccttacctcagaagat 438
            |||||||||||||||||||||
Sbjct: 1654 tgattccttacctcagaagat 1674
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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 19      gctcagtcaaaccagcaccac 39
               |||||||||||||||||||||
Sbjct: 1031023 gctcagtcaaaccagcaccac 1031043
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>dbj|AK142629.1| Mus musculus 10 days lactation, adult female mammary gland cDNA,
           RIKEN full-length enriched library, clone:D730019K09
           product:progesterone receptor, full insert sequence
          Length = 1504

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 418 tgattccttacctcagaagat 438
           |||||||||||||||||||||
Sbjct: 613 tgattccttacctcagaagat 633
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>ref|NM_022847.1| Rattus norvegicus progesterone receptor (Pgr), mRNA
          Length = 3056

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 418  tgattccttacctcagaagat 438
            |||||||||||||||||||||
Sbjct: 1647 tgattccttacctcagaagat 1667
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>dbj|AK054117.1| Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN
           full-length enriched library, clone:E230020K18
           product:progesterone receptor, full insert sequence
          Length = 2384

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 418 tgattccttacctcagaagat 438
           |||||||||||||||||||||
Sbjct: 972 tgattccttacctcagaagat 992
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>dbj|AK036862.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched
            library, clone:9930019P03 product:PROGESTERONE RECEPTOR
            (PR) homolog [Mus musculus], full insert sequence
          Length = 3900

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 418  tgattccttacctcagaagat 438
            |||||||||||||||||||||
Sbjct: 1706 tgattccttacctcagaagat 1726
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                         
Query: 159      ccacttggccttgatcctcaccctctcgatgctctgcttca 199
                |||| |||| ||||||  ||||||||||| |||||||||||
Sbjct: 11797072 ccacctggcgttgatcagcaccctctcgaggctctgcttca 11797032
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>ref|XM_579464.1| PREDICTED: Rattus norvegicus progesterone receptor (Pgr), mRNA
          Length = 3064

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 418  tgattccttacctcagaagat 438
            |||||||||||||||||||||
Sbjct: 1656 tgattccttacctcagaagat 1676
to top
>dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1506_A04
          Length = 114998

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 159   ccacttggccttgatcctcaccctctcgatgctctgcttca 199
             |||| |||| ||||||  ||||||||||| |||||||||||
Sbjct: 39890 ccacctggcgttgatcagcaccctctcgaggctctgcttca 39850
to top
>dbj|AK120068.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N11, full
            insert sequence
          Length = 2975

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 340  tcccagttttccttcaaccatgtccatgc 368
            |||||||||||||||||||| | ||||||
Sbjct: 2474 tcccagttttccttcaaccaggcccatgc 2446
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>dbj|AK024942.1| Homo sapiens cDNA: FLJ21289 fis, clone COL01938
          Length = 4938

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 620  catctggtggggaggaggtgg 640
            |||||||||||||||||||||
Sbjct: 3774 catctggtggggaggaggtgg 3794
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>dbj|AK068512.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013152F03, full
            insert sequence
          Length = 2232

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 340  tcccagttttccttcaaccatgtccatgc 368
            |||||||||||||||||||| | ||||||
Sbjct: 1633 tcccagttttccttcaaccaggaccatgc 1605
to top
>dbj|AK068165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134N07, full
            insert sequence
          Length = 2985

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 159  ccacttggccttgatcctcaccctctcgatgctctgcttca 199
            |||| |||| ||||||  ||||||||||| |||||||||||
Sbjct: 2549 ccacctggcgttgatcagcaccctctcgaggctctgcttca 2509



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 340  tcccagttttccttcaaccatgtccatgc 368
            |||||||||||||||||||| | ||||||
Sbjct: 2365 tcccagttttccttcaaccaggaccatgc 2337
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>gb|M68915.1|MUSPR Mouse progesterone receptor (PR) mRNA, complete cds
          Length = 2794

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 418  tgattccttacctcagaagat 438
            |||||||||||||||||||||
Sbjct: 1654 tgattccttacctcagaagat 1674
to top
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 19     gctcagtcaaaccagcaccac 39
              |||||||||||||||||||||
Sbjct: 589854 gctcagtcaaaccagcaccac 589834
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>gb|L16922.1|RATPRGRECB Rat progesteron receptor gene, complete cds
          Length = 3056

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 418  tgattccttacctcagaagat 438
            |||||||||||||||||||||
Sbjct: 1647 tgattccttacctcagaagat 1667
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>gb|AC150242.3| Rhinolophus ferrumequinum clone VMRC7-331J24, complete sequence
          Length = 120894

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 552    agattcatagccacttctgtttga 575
              ||||||| ||||||||||||||||
Sbjct: 110007 agattcaaagccacttctgtttga 110030
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>gb|AC116472.14| Mus musculus chromosome 7, clone RP23-384B23, complete sequence
          Length = 216191

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 347    tttccttcaaccatgtccat 366
              ||||||||||||||||||||
Sbjct: 172386 tttccttcaaccatgtccat 172405
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>gb|AC117621.7| Mus musculus chromosome 8, clone RP23-114B10, complete sequence
          Length = 214933

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 298    aaataggtgagcaggtgtcc 317
              ||||||||||||||||||||
Sbjct: 158186 aaataggtgagcaggtgtcc 158167
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>emb|CR956428.10| Pig DNA sequence from clone PigE-259M5 on chromosome 7, complete
             sequence
          Length = 167615

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 628   ggggaggaggtggcgtctctctgt 651
             ||||||||||||| ||||||||||
Sbjct: 18516 ggggaggaggtggtgtctctctgt 18539
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>gb|AC114995.7| Mus musculus chromosome 8, clone RP23-171P5, complete sequence
          Length = 242745

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 298  aaataggtgagcaggtgtcc 317
            ||||||||||||||||||||
Sbjct: 5015 aaataggtgagcaggtgtcc 4996
to top
>emb|AL162389.21| Human DNA sequence from clone RP11-380I20 on chromosome 9 Contains a
             small EDRK-rich factor 2 (SERF2) pseudogene, a ribosomal
             protein L36a pseudogene 6 (RPL36AP6) and two CpG islands,
             complete sequence
          Length = 157017

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 551   gagattcatagccacttctgtttg 574
             ||||||||||||||| ||||||||
Sbjct: 90195 gagattcatagccacatctgtttg 90172
to top
>gb|AC155227.3| Rhinolophus ferrumequinum clone VMRC7-4K1, complete sequence
          Length = 160979

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 552   agattcatagccacttctgtttga 575
             ||||||| ||||||||||||||||
Sbjct: 58427 agattcaaagccacttctgtttga 58450
to top
>emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 in linkage group 3,
             complete sequence
          Length = 197042

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   cccacttggccttgatcctc 177
             ||||||||||||||||||||
Sbjct: 10539 cccacttggccttgatcctc 10520
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>gb|BC099360.1| Xenopus laevis cDNA clone IMAGE:6877290, partial cds
          Length = 1400

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 639 ggcgtctctctgtcttccag 658
           ||||||||||||||||||||
Sbjct: 664 ggcgtctctctgtcttccag 683
to top
>gb|AY527062.1| Mytilus edulis 18S ribosomal RNA gene, partial sequence
          Length = 1823

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 tcgcccttggtgctcttgac 158
           ||||||||||||||||||||
Sbjct: 716 tcgcccttggtgctcttgac 735
to top
>gb|AC011484.7| Homo sapiens chromosome 19 clone CTB-158D10, complete sequence
          Length = 112351

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 618   gacatctggtggggaggaggtggc 641
             ||||||||||||| ||||||||||
Sbjct: 51877 gacatctggtgggcaggaggtggc 51854
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 365     atgccacctcatgcgctgct 384
               ||||||||||||||||||||
Sbjct: 5028169 atgccacctcatgcgctgct 5028150
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>dbj|AB201231.1| Musculista senhousia gene for 18S ribosomal RNA, partial sequence
          Length = 1740

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 tcgcccttggtgctcttgac 158
           ||||||||||||||||||||
Sbjct: 670 tcgcccttggtgctcttgac 689
to top
>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold
          Length = 1756392

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 552     agattcatagccacttctgtttga 575
               ||||||| ||||||||||||||||
Sbjct: 1391095 agattcaaagccacttctgtttga 1391118
to top
>gb|AF124207.1|AF124207 Musculus senhousei 18S ribosomal RNA gene, partial sequence
          Length = 1778

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 tcgcccttggtgctcttgac 158
           ||||||||||||||||||||
Sbjct: 687 tcgcccttggtgctcttgac 706
to top
>gb|AF124206.1|AF124206 Musculus discors 18S ribosomal RNA gene, partial sequence
          Length = 1782

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 tcgcccttggtgctcttgac 158
           ||||||||||||||||||||
Sbjct: 696 tcgcccttggtgctcttgac 715
to top
>gb|L33448.1|MSLSRRNAA Mytilus edulis 18S small subunit ribosomal RNA gene, complete
           sequence
          Length = 1827

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 tcgcccttggtgctcttgac 158
           ||||||||||||||||||||
Sbjct: 717 tcgcccttggtgctcttgac 736
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>gb|L33449.1|MSLSRRNAB Mytilus californianus 18S small subunit ribosomal RNA gene,
           complete sequence
          Length = 1825

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 tcgcccttggtgctcttgac 158
           ||||||||||||||||||||
Sbjct: 715 tcgcccttggtgctcttgac 734
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>gb|L33451.1|MSLSRRNAC Mytilus galloprovincialis isolate Morgat, Bay of Douarnenez, West
           Brittany, France 18S small subunit ribosomal RNA gene,
           complete sequence
          Length = 1826

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 tcgcccttggtgctcttgac 158
           ||||||||||||||||||||
Sbjct: 716 tcgcccttggtgctcttgac 735
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>gb|L33453.1|MSLSRRNAE Mytilus trossulus strain Pacific strain 1 18S small subunit
           ribosomal RNA gene, complete sequence
          Length = 1827

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 tcgcccttggtgctcttgac 158
           ||||||||||||||||||||
Sbjct: 717 tcgcccttggtgctcttgac 736
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>gb|L33454.1|MSLSRRNAF Mytilus trossulus strain Pacific strain 2 18S small subunit
           ribosomal RNA gene, complete sequence
          Length = 1827

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 tcgcccttggtgctcttgac 158
           ||||||||||||||||||||
Sbjct: 717 tcgcccttggtgctcttgac 736
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>gb|L33455.1|MSLSRRNAG Mytilus trossulus strain Pacific strain 3 18S small subunit
           ribosomal RNA gene, complete sequence
          Length = 1826

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 tcgcccttggtgctcttgac 158
           ||||||||||||||||||||
Sbjct: 716 tcgcccttggtgctcttgac 735
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>dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0049I08
          Length = 144379

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 365   atgccacctcatgcgctgct 384
             ||||||||||||||||||||
Sbjct: 69858 atgccacctcatgcgctgct 69839
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>emb|AL929222.6| Zebrafish DNA sequence from clone DKEY-31N5, complete sequence
          Length = 212599

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 158    cccacttggccttgatcctc 177
              ||||||||||||||||||||
Sbjct: 203503 cccacttggccttgatcctc 203484
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>emb|X78814.1|NPPSY N.pseudonarcissus mRNA for phytoene synthase
          Length = 1548

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 348 ttccttcaaccatgtccatg 367
           ||||||||||||||||||||
Sbjct: 781 ttccttcaaccatgtccatg 762
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>gb|AC174163.2| Gallus gallus BAC clone CH261-69O1 from chromosome ul, complete
             sequence
          Length = 178322

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 580   ttcactgtctgcatcagagc 599
             ||||||||||||||||||||
Sbjct: 33359 ttcactgtctgcatcagagc 33340
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>gb|DQ310715.1| Mytella strigata 18S ribosomal RNA gene, partial sequence
          Length = 415

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 tcgcccttggtgctcttgac 158
           ||||||||||||||||||||
Sbjct: 125 tcgcccttggtgctcttgac 144
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>emb|AL844846.11| Mouse DNA sequence from clone RP23-358I19 on chromosome 2, complete
             sequence
          Length = 209013

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 642   gtctctctgtcttccagaaa 661
             ||||||||||||||||||||
Sbjct: 76946 gtctctctgtcttccagaaa 76965
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>emb|X90960.1|AN18SRRNA A.noae 18S ribosomal RNA gene
          Length = 1782

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 tcgcccttggtgctcttgac 158
           ||||||||||||||||||||
Sbjct: 712 tcgcccttggtgctcttgac 731
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>emb|X91403.1|AGEL18S A.gelatinosum 18S ribosomal RNA gene
          Length = 1813

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 tcgcccttggtgctcttgac 158
           ||||||||||||||||||||
Sbjct: 714 tcgcccttggtgctcttgac 733
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>gb|L24490.1|MSLMRNAB Mytilus trossulus 18S ribosomal RNA (18S rRNA)
          Length = 1826

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 tcgcccttggtgctcttgac 158
           ||||||||||||||||||||
Sbjct: 716 tcgcccttggtgctcttgac 735
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>gb|L24489.1|MSLMRNAA Mytilus edulis 18S ribosomal RNA (18SrRNA)
          Length = 1826

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 tcgcccttggtgctcttgac 158
           ||||||||||||||||||||
Sbjct: 717 tcgcccttggtgctcttgac 736


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,340,566
Number of Sequences: 3902068
Number of extensions: 6340566
Number of successful extensions: 107789
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107520
Number of HSP's gapped (non-prelim): 258
length of query: 704
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 681
effective length of database: 17,143,297,704
effective search space: 11674585736424
effective search space used: 11674585736424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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