Clone Information

BLAST Search Result

Clone Name	rbags6j24
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_467086.1\| Oryza sativa (japonica cultivar-group), mRNA	317	2e-83
2	ref\|XM_506887.1\| PREDICTED Oryza sativa (japonica cultivar-group...	317	2e-83
3	dbj\|AK104153.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	317	2e-83
4	dbj\|AK068164.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	317	2e-83
5	dbj\|AK060578.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	317	2e-83
6	gb\|AY105955.1\| Zea mays PCO121693 mRNA sequence	313	3e-82
7	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	153	6e-34
8	dbj\|AP002485.2\| Oryza sativa (japonica cultivar-group) genomic D...	153	6e-34
9	emb\|AJ307662.1\|OSA307662 Oryza sativa genomic DNA fragment, chro...	153	6e-34
10	emb\|AM085509.1\| Hordeum vulgare mRNA for autophagy protein 9 (at...	101	2e-18
11	emb\|AL139409.9\| Human DNA sequence from clone RP11-120D12 on chr...	46	0.10
12	ref\|XM_385229.1\| Gibberella zeae PH-1 chromosome 3 hypothetical ...	42	1.6
13	emb\|AL135842.15\| Human DNA sequence from clone RP1-91G5 on chrom...	42	1.6
14	gb\|AC026807.4\| Homo sapiens chromosome 5 clone RPCI-1_58P9, comp...	42	1.6
15	gb\|AC158171.2\| Pan troglodytes BAC clone CH251-434I6 from chromo...	42	1.6
16	gb\|AF261103.1\|AF261103 Myxococcus xanthus nusA/infB operon, part...	42	1.6
17	ref\|NM_016523.1\| Homo sapiens killer cell lectin-like receptor s...	40	6.4
18	emb\|BX842623.1\| Neurospora crassa DNA linkage group I BAC clone ...	40	6.4
19	gb\|CP000142.2\| Pelobacter carbinolicus DSM 2380, complete genome	40	6.4
20	emb\|AJ305370.1\|HSA305370 Homo sapiens mRNA for activating corece...	40	6.4
21	gb\|AC007068.17\| Homo sapiens 12p BAC RPCI11-75L1 (Roswell Park C...	40	6.4
22	gb\|AF267245.1\|AF267245 Homo sapiens killer cell lectin-like rece...	40	6.4
23	gb\|AF267244.1\|AF267244 Homo sapiens killer cell lectin-like rece...	40	6.4
24	gb\|AY747799.1\| Nomonyx dominicus voucher UAM 14601 (KGM 476) D-l...	40	6.4
25	gb\|AY747798.1\| Nomonyx dominicus voucher UAM 14785 (KGM 466) D-l...	40	6.4
26	gb\|AY747797.1\| Nomonyx dominicus voucher UAM 14785 (KGM 466) D-l...	40	6.4
27	gb\|AY747796.1\| Nomonyx dominicus voucher UAM 19510 (KGM 465) D-l...	40	6.4
28	gb\|AY747795.1\| Nomonyx dominicus voucher UAM 14784 (KGM 464) D-l...	40	6.4
29	gb\|AY747794.1\| Nomonyx dominicus voucher UAM 14784 (KGM 464) D-l...	40	6.4
30	gb\|AY747790.1\| Nomonyx dominicus voucher LSUMZ 123431 D-loop and...	40	6.4
31	gb\|BC040358.1\| Homo sapiens, clone IMAGE:4340526, mRNA	40	6.4
32	gb\|BC098354.1\| Homo sapiens killer cell lectin-like receptor sub...	40	6.4
33	gb\|AF175207.1\|AF175207 Homo sapiens lectin-like receptor F1, spl...	40	6.4
34	gb\|AF175206.1\|AF175206 Homo sapiens lectin-like receptor F1 (KLR...	40	6.4
35	gb\|BC098166.1\| Homo sapiens killer cell lectin-like receptor sub...	40	6.4
36	gb\|BC096734.1\| Homo sapiens killer cell lectin-like receptor sub...	40	6.4
37	gb\|BC098257.1\| Homo sapiens killer cell lectin-like receptor sub...	40	6.4
38	emb\|AJ534355.1\|ABI534355 Agaricus bisporus partial mRNA for puta...	40	6.4
39	gb\|AE017321.1\| Wolbachia endosymbiont strain TRS of Brugia malay...	40	6.4
40	gb\|AC107884.15\| Homo sapiens chromosome 11, clone CTD-2516F10, c...	40	6.4

>ref|XM_467086.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 909

 Score =  317 bits (160), Expect = 2e-83
 Identities = 301/348 (86%)
 Strand = Plus / Minus

                                                                       
Query: 99  acttgaaggttgagaaacggggaagcttgtacttcaggtagtacaactttgccctcctca 158
           ||||||| ||||| || ||||||||||||| |||||  || || |||||||| || ||||
Sbjct: 760 acttgaaagttgaaaagcggggaagcttgtgcttcaaataatataactttgctcttctca 701

                                                                       
Query: 159 ccttcttgtgtctgattactttgatctccttgatccttggtgagtatatggggaatgtaa 218
           | |||||||| ||||||||||| || ||||||||||| ||||| ||||| ||||| ||||
Sbjct: 700 ctttcttgtgcctgattactttaatttccttgatcctgggtgaatatatagggaaggtaa 641

                                                                       
Query: 219 tttcaactccaacaccggcaataatcctcctgacgcggatcgtggtgtgaacaccagatt 278
           | |||||||| ||||| ||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 640 tctcaactccgacaccagcaataatccttctgacacggattgtggtgtgaacaccagatt 581

                                                                       
Query: 279 tgtgctttgcaatgattatacccttaaagagagacaatctcctcttgttgggacgttgca 338
           |||| ||||| || ||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct: 580 tgtgttttgctataattatgcccttaaagagcgacaatctcctcttgttgggccgttgca 521

                                                                       
Query: 339 ttctaagctcgatgatgtcaccgggcttcaaatccggaagtactttcaccttctcagcct 398
           |||||||||| ||||||||||| ||| | | ||| || |     |||||||| |||||||
Sbjct: 520 ttctaagctcaatgatgtcaccaggcctaagatctggtaaagtcttcaccttttcagcct 461

                                                           
Query: 399 cctcgatgaactgcttgttcagaatcccgatgatctcgccgaacttaa 446
           |||| |||||||| |||||||||||||| |||||||| ||||||||||
Sbjct: 460 cctcaatgaactgtttgttcagaatcccaatgatctccccgaacttaa 413

to top

>ref|XM_506887.1| PREDICTED Oryza sativa (japonica cultivar-group), P0491E01.20 mRNA
          Length = 1005

 Score =  317 bits (160), Expect = 2e-83
 Identities = 301/348 (86%)
 Strand = Plus / Minus

                                                                       
Query: 99  acttgaaggttgagaaacggggaagcttgtacttcaggtagtacaactttgccctcctca 158
           ||||||| ||||| || ||||||||||||| |||||  || || |||||||| || ||||
Sbjct: 761 acttgaaagttgaaaagcggggaagcttgtgcttcaaataatataactttgctcttctca 702

                                                                       
Query: 159 ccttcttgtgtctgattactttgatctccttgatccttggtgagtatatggggaatgtaa 218
           | |||||||| ||||||||||| || ||||||||||| ||||| ||||| ||||| ||||
Sbjct: 701 ctttcttgtgcctgattactttaatttccttgatcctgggtgaatatatagggaaggtaa 642

                                                                       
Query: 219 tttcaactccaacaccggcaataatcctcctgacgcggatcgtggtgtgaacaccagatt 278
           | |||||||| ||||| ||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 641 tctcaactccgacaccagcaataatccttctgacacggattgtggtgtgaacaccagatt 582

                                                                       
Query: 279 tgtgctttgcaatgattatacccttaaagagagacaatctcctcttgttgggacgttgca 338
           |||| ||||| || ||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct: 581 tgtgttttgctataattatgcccttaaagagcgacaatctcctcttgttgggccgttgca 522

                                                                       
Query: 339 ttctaagctcgatgatgtcaccgggcttcaaatccggaagtactttcaccttctcagcct 398
           |||||||||| ||||||||||| ||| | | ||| || |     |||||||| |||||||
Sbjct: 521 ttctaagctcaatgatgtcaccaggcctaagatctggtaaagtcttcaccttttcagcct 462

                                                           
Query: 399 cctcgatgaactgcttgttcagaatcccgatgatctcgccgaacttaa 446
           |||| |||||||| |||||||||||||| |||||||| ||||||||||
Sbjct: 461 cctcaatgaactgtttgttcagaatcccaatgatctccccgaacttaa 414

to top

>dbj|AK104153.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-G03, full
           insert sequence
          Length = 909

 Score =  317 bits (160), Expect = 2e-83
 Identities = 301/348 (86%)
 Strand = Plus / Minus

                                                                       
Query: 99  acttgaaggttgagaaacggggaagcttgtacttcaggtagtacaactttgccctcctca 158
           ||||||| ||||| || ||||||||||||| |||||  || || |||||||| || ||||
Sbjct: 760 acttgaaagttgaaaagcggggaagcttgtgcttcaaataatataactttgctcttctca 701

                                                                       
Query: 159 ccttcttgtgtctgattactttgatctccttgatccttggtgagtatatggggaatgtaa 218
           | |||||||| ||||||||||| || ||||||||||| ||||| ||||| ||||| ||||
Sbjct: 700 ctttcttgtgcctgattactttaatttccttgatcctgggtgaatatatagggaaggtaa 641

                                                                       
Query: 219 tttcaactccaacaccggcaataatcctcctgacgcggatcgtggtgtgaacaccagatt 278
           | |||||||| ||||| ||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 640 tctcaactccgacaccagcaataatccttctgacacggattgtggtgtgaacaccagatt 581

                                                                       
Query: 279 tgtgctttgcaatgattatacccttaaagagagacaatctcctcttgttgggacgttgca 338
           |||| ||||| || ||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct: 580 tgtgttttgctataattatgcccttaaagagcgacaatctcctcttgttgggccgttgca 521

                                                                       
Query: 339 ttctaagctcgatgatgtcaccgggcttcaaatccggaagtactttcaccttctcagcct 398
           |||||||||| ||||||||||| ||| | | ||| || |     |||||||| |||||||
Sbjct: 520 ttctaagctcaatgatgtcaccaggcctaagatctggtaaagtcttcaccttttcagcct 461

                                                           
Query: 399 cctcgatgaactgcttgttcagaatcccgatgatctcgccgaacttaa 446
           |||| |||||||| |||||||||||||| |||||||| ||||||||||
Sbjct: 460 cctcaatgaactgtttgttcagaatcccaatgatctccccgaacttaa 413

to top

>dbj|AK068164.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135C05, full
           insert sequence
          Length = 1005

 Score =  317 bits (160), Expect = 2e-83
 Identities = 301/348 (86%)
 Strand = Plus / Minus

                                                                       
Query: 99  acttgaaggttgagaaacggggaagcttgtacttcaggtagtacaactttgccctcctca 158
           ||||||| ||||| || ||||||||||||| |||||  || || |||||||| || ||||
Sbjct: 761 acttgaaagttgaaaagcggggaagcttgtgcttcaaataatataactttgctcttctca 702

                                                                       
Query: 159 ccttcttgtgtctgattactttgatctccttgatccttggtgagtatatggggaatgtaa 218
           | |||||||| ||||||||||| || ||||||||||| ||||| ||||| ||||| ||||
Sbjct: 701 ctttcttgtgcctgattactttaatttccttgatcctgggtgaatatatagggaaggtaa 642

                                                                       
Query: 219 tttcaactccaacaccggcaataatcctcctgacgcggatcgtggtgtgaacaccagatt 278
           | |||||||| ||||| ||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 641 tctcaactccgacaccagcaataatccttctgacacggattgtggtgtgaacaccagatt 582

                                                                       
Query: 279 tgtgctttgcaatgattatacccttaaagagagacaatctcctcttgttgggacgttgca 338
           |||| ||||| || ||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct: 581 tgtgttttgctataattatgcccttaaagagcgacaatctcctcttgttgggccgttgca 522

                                                                       
Query: 339 ttctaagctcgatgatgtcaccgggcttcaaatccggaagtactttcaccttctcagcct 398
           |||||||||| ||||||||||| ||| | | ||| || |     |||||||| |||||||
Sbjct: 521 ttctaagctcaatgatgtcaccaggcctaagatctggtaaagtcttcaccttttcagcct 462

                                                           
Query: 399 cctcgatgaactgcttgttcagaatcccgatgatctcgccgaacttaa 446
           |||| |||||||| |||||||||||||| |||||||| ||||||||||
Sbjct: 461 cctcaatgaactgtttgttcagaatcccaatgatctccccgaacttaa 414

to top

>dbj|AK060578.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-E10, full
            insert sequence
          Length = 1278

 Score =  317 bits (160), Expect = 2e-83
 Identities = 301/348 (86%)
 Strand = Plus / Minus

                                                                        
Query: 99   acttgaaggttgagaaacggggaagcttgtacttcaggtagtacaactttgccctcctca 158
            ||||||| ||||| || ||||||||||||| |||||  || || |||||||| || ||||
Sbjct: 1060 acttgaaagttgaaaagcggggaagcttgtgcttcaaataatataactttgctcttctca 1001

                                                                        
Query: 159  ccttcttgtgtctgattactttgatctccttgatccttggtgagtatatggggaatgtaa 218
            | |||||||| ||||||||||| || ||||||||||| ||||| ||||| ||||| ||||
Sbjct: 1000 ctttcttgtgcctgattactttaatttccttgatcctgggtgaatatatagggaaggtaa 941

                                                                        
Query: 219  tttcaactccaacaccggcaataatcctcctgacgcggatcgtggtgtgaacaccagatt 278
            | |||||||| ||||| ||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 940  tctcaactccgacaccagcaataatccttctgacacggattgtggtgtgaacaccagatt 881

                                                                        
Query: 279  tgtgctttgcaatgattatacccttaaagagagacaatctcctcttgttgggacgttgca 338
            |||| ||||| || ||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct: 880  tgtgttttgctataattatgcccttaaagagcgacaatctcctcttgttgggccgttgca 821

                                                                        
Query: 339  ttctaagctcgatgatgtcaccgggcttcaaatccggaagtactttcaccttctcagcct 398
            |||||||||| ||||||||||| ||| | | ||| || |     |||||||| |||||||
Sbjct: 820  ttctaagctcaatgatgtcaccaggcctaagatctggtaaagtcttcaccttttcagcct 761

                                                            
Query: 399  cctcgatgaactgcttgttcagaatcccgatgatctcgccgaacttaa 446
            |||| |||||||| |||||||||||||| |||||||| ||||||||||
Sbjct: 760  cctcaatgaactgtttgttcagaatcccaatgatctccccgaacttaa 713

to top

>gb|AY105955.1| Zea mays PCO121693 mRNA sequence
          Length = 1004

 Score =  313 bits (158), Expect = 3e-82
 Identities = 302/350 (86%)
 Strand = Plus / Minus

                                                                       
Query: 97  tcacttgaaggttgagaaacggggaagcttgtacttcaggtagtacaactttgccctcct 156
           ||||||||| ||||| || |||||||||||||  |||||||||||||||||||| |||||
Sbjct: 817 tcacttgaatgttgaaaagcggggaagcttgtctttcaggtagtacaactttgctctcct 758

                                                                       
Query: 157 caccttcttgtgtctgattactttgatctccttgatccttggtgagtatatggggaatgt 216
           ||| |||||||| ||||| ||  |||| ||||||||||| |||||||| |  ||||| ||
Sbjct: 757 cactttcttgtgcctgataaccgtgatttccttgatcctgggtgagtacactgggaaggt 698

                                                                       
Query: 217 aatttcaactccaacaccggcaataatcctcctgacgcggatcgtggtgtgaacaccaga 276
           ||| |||||||| ||||| ||||| ||||| ||||| ||||| |||||||||||||||| 
Sbjct: 697 aatctcaactcctacaccagcaatgatccttctgacacggattgtggtgtgaacaccagc 638

                                                                       
Query: 277 tttgtgctttgcaatgattatacccttaaagagagacaatctcctcttgttgggacgttg 336
           |||||||||||| |||||||| ||||||||||| ||||||||||| |||||||| |||||
Sbjct: 637 tttgtgctttgcgatgattatgcccttaaagagcgacaatctccttttgttgggccgttg 578

                                                                       
Query: 337 cattctaagctcgatgatgtcaccgggcttcaaatccggaagtactttcaccttctcagc 396
           ||| |||||||| ||||| || || ||| ||| |||||| |     ||||||||||||||
Sbjct: 577 catcctaagctcaatgatatcgccaggcctcagatccggtacagtcttcaccttctcagc 518

                                                             
Query: 397 ctcctcgatgaactgcttgttcagaatcccgatgatctcgccgaacttaa 446
           |||||| ||||||||||| ||||||||||| || || |||||||||||||
Sbjct: 517 ctcctcaatgaactgcttattcagaatcccaattatttcgccgaacttaa 468

to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  153 bits (77), Expect = 6e-34
 Identities = 116/129 (89%)
 Strand = Plus / Plus

                                                                            
Query: 209      gggaatgtaatttcaactccaacaccggcaataatcctcctgacgcggatcgtggtgtga 268
                ||||| ||||| |||||||| ||||| ||||||||||| ||||| ||||| |||||||||
Sbjct: 26337384 gggaaggtaatctcaactccgacaccagcaataatccttctgacacggattgtggtgtga 26337443

                                                                            
Query: 269      acaccagatttgtgctttgcaatgattatacccttaaagagagacaatctcctcttgttg 328
                |||||||||||||| ||||| || ||||| ||||||||||| ||||||||||||||||||
Sbjct: 26337444 acaccagatttgtgttttgctataattatgcccttaaagagcgacaatctcctcttgttg 26337503

                         
Query: 329      ggacgttgc 337
                || ||||||
Sbjct: 26337504 ggccgttgc 26337512



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 88/103 (85%)
 Strand = Plus / Plus

                                                                            
Query: 99       acttgaaggttgagaaacggggaagcttgtacttcaggtagtacaactttgccctcctca 158
                ||||||| ||||| || ||||||||||||| |||||  || || |||||||| || ||||
Sbjct: 26336234 acttgaaagttgaaaagcggggaagcttgtgcttcaaataatataactttgctcttctca 26336293

                                                           
Query: 159      ccttcttgtgtctgattactttgatctccttgatccttggtga 201
                | |||||||| ||||||||||| || ||||||||||| |||||
Sbjct: 26336294 ctttcttgtgcctgattactttaatttccttgatcctgggtga 26336336



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                          
Query: 383      ttcaccttctcagcctcctcgatgaactgcttgttcagaatc 424
                |||||||| ||||||||||| |||||||| ||||||||||||
Sbjct: 26337640 ttcaccttttcagcctcctcaatgaactgtttgttcagaatc 26337681

to top

>dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:P0491E01
          Length = 136150

 Score =  153 bits (77), Expect = 6e-34
 Identities = 116/129 (89%)
 Strand = Plus / Plus

                                                                         
Query: 209   gggaatgtaatttcaactccaacaccggcaataatcctcctgacgcggatcgtggtgtga 268
             ||||| ||||| |||||||| ||||| ||||||||||| ||||| ||||| |||||||||
Sbjct: 69736 gggaaggtaatctcaactccgacaccagcaataatccttctgacacggattgtggtgtga 69795

                                                                         
Query: 269   acaccagatttgtgctttgcaatgattatacccttaaagagagacaatctcctcttgttg 328
             |||||||||||||| ||||| || ||||| ||||||||||| ||||||||||||||||||
Sbjct: 69796 acaccagatttgtgttttgctataattatgcccttaaagagcgacaatctcctcttgttg 69855

                      
Query: 329   ggacgttgc 337
             || ||||||
Sbjct: 69856 ggccgttgc 69864



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 88/103 (85%)
 Strand = Plus / Plus

                                                                         
Query: 99    acttgaaggttgagaaacggggaagcttgtacttcaggtagtacaactttgccctcctca 158
             ||||||| ||||| || ||||||||||||| |||||  || || |||||||| || ||||
Sbjct: 68586 acttgaaagttgaaaagcggggaagcttgtgcttcaaataatataactttgctcttctca 68645

                                                        
Query: 159   ccttcttgtgtctgattactttgatctccttgatccttggtga 201
             | |||||||| ||||||||||| || ||||||||||| |||||
Sbjct: 68646 ctttcttgtgcctgattactttaatttccttgatcctgggtga 68688



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                       
Query: 383   ttcaccttctcagcctcctcgatgaactgcttgttcagaatc 424
             |||||||| ||||||||||| |||||||| ||||||||||||
Sbjct: 69992 ttcaccttttcagcctcctcaatgaactgtttgttcagaatc 70033

to top

>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score =  153 bits (77), Expect = 6e-34
 Identities = 116/129 (89%)
 Strand = Plus / Plus

                                                                         
Query: 209   gggaatgtaatttcaactccaacaccggcaataatcctcctgacgcggatcgtggtgtga 268
             ||||| ||||| |||||||| ||||| ||||||||||| ||||| ||||| |||||||||
Sbjct: 60055 gggaaggtaatctcaactccgacaccagcaataatccttctgacacggattgtggtgtga 60114

                                                                         
Query: 269   acaccagatttgtgctttgcaatgattatacccttaaagagagacaatctcctcttgttg 328
             |||||||||||||| ||||| || ||||| ||||||||||| ||||||||||||||||||
Sbjct: 60115 acaccagatttgtgttttgctataattatgcccttaaagagcgacaatctcctcttgttg 60174

                      
Query: 329   ggacgttgc 337
             || ||||||
Sbjct: 60175 ggccgttgc 60183



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 88/103 (85%)
 Strand = Plus / Plus

                                                                         
Query: 99    acttgaaggttgagaaacggggaagcttgtacttcaggtagtacaactttgccctcctca 158
             ||||||| ||||| || ||||||||||||| |||||  || || |||||||| || ||||
Sbjct: 58903 acttgaaagttgaaaagcggggaagcttgtgcttcaaataatataactttgctcttctca 58962

                                                        
Query: 159   ccttcttgtgtctgattactttgatctccttgatccttggtga 201
             | |||||||| ||||||||||| || ||||||||||| |||||
Sbjct: 58963 ctttcttgtgcctgattactttaatttccttgatcctgggtga 59005



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                       
Query: 383   ttcaccttctcagcctcctcgatgaactgcttgttcagaatc 424
             |||||||| ||||||||||| |||||||| ||||||||||||
Sbjct: 60311 ttcaccttttcagcctcctcaatgaactgtttgttcagaatc 60352

to top

>emb|AM085509.1| Hordeum vulgare mRNA for autophagy protein 9 (atg9 gene)
          Length = 3302

 Score =  101 bits (51), Expect = 2e-18
 Identities = 102/119 (85%)
 Strand = Plus / Plus

                                                                       
Query: 284 tttgcaatgattatacccttaaagagagacaatctcctcttgttgggacgttgcattcta 343
           ||||||||||||   ||| |||| |||| | ||| |||||||||||  |||  |||||||
Sbjct: 248 tttgcaatgatttcccccctaaaaagagcccatcccctcttgttggcccgtgccattcta 307

                                                                      
Query: 344 agctcgatgatgtcaccgggcttcaaatccggaagtactttcaccttctcagcctcctc 402
           ||||||||||||||||||| | |||||||||||||||||||||||| |||  |||||||
Sbjct: 308 agctcgatgatgtcaccggccctcaaatccggaagtactttcacctcctcctcctcctc 366

to top

>emb|AL139409.9| Human DNA sequence from clone RP11-120D12 on chromosome 1q21.2-22
             Contains the 5' end of the gene for Fc receptor-like
             protein 1 (FCRH1), the CD5L gene for CD5 antigen-like
             (scavenger receptor cysteine rich family) and a
             mitochondrial ribosomal protein S21 (MRPS21) pseudogene,
             complete sequence
          Length = 63633

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 183   tctccttgatccttggtgagtat 205
             |||||||||||||||||||||||
Sbjct: 35498 tctccttgatccttggtgagtat 35476

to top

>ref|XM_385229.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05053.1)
           partial mRNA
          Length = 1176

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 388 cttctcagcctcctcgatgaa 408
           |||||||||||||||||||||
Sbjct: 402 cttctcagcctcctcgatgaa 382

to top

>emb|AL135842.15| Human DNA sequence from clone RP1-91G5 on chromosome 1q21.1-21.3
             Contains the 3' end of a novel gene, a novel gene, a high
             mobility group nucleosomal binding domain 3 (HMGN3)
             pseudogene, the C1orf10 gene for chromosome 1 open reading
             frame 10, the SPRL5A for small proline rich-like
             (epidermal differentiation complex) 5A and the NICE-1 gene
             for NICE-1 protein, complete sequence
          Length = 188285

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 264   tgtgaacaccagatttgtgct 284
             |||||||||||||||||||||
Sbjct: 29903 tgtgaacaccagatttgtgct 29883

to top

>gb|AC026807.4| Homo sapiens chromosome 5 clone RPCI-1_58P9, complete sequence
          Length = 101716

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 380   actttcaccttctcagcctcc 400
             |||||||||||||||||||||
Sbjct: 69064 actttcaccttctcagcctcc 69084

to top

>gb|AC158171.2| Pan troglodytes BAC clone CH251-434I6 from chromosome unknown, complete
              sequence
          Length = 184468

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 380    actttcaccttctcagcctcc 400
              |||||||||||||||||||||
Sbjct: 145334 actttcaccttctcagcctcc 145354

to top

>gb|AF261103.1|AF261103 Myxococcus xanthus nusA/infB operon, partial sequence; and unknown
            gene
          Length = 4674

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 346  ctcgatgatgtcaccgggctt 366
            |||||||||||||||||||||
Sbjct: 4376 ctcgatgatgtcaccgggctt 4356

to top

>ref|NM_016523.1| Homo sapiens killer cell lectin-like receptor subfamily F, member 1
           (KLRF1), mRNA
          Length = 1242

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 actttgatctccttgatcct 195
           ||||||||||||||||||||
Sbjct: 224 actttgatctccttgatcct 243

to top

>emb|BX842623.1| Neurospora crassa DNA linkage group I BAC clone B2I10
          Length = 83703

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   ggttgagaaacggggaagct 125
             ||||||||||||||||||||
Sbjct: 33637 ggttgagaaacggggaagct 33618

to top

>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 416     ttcagaatcccgatgatctc 435
               ||||||||||||||||||||
Sbjct: 1784144 ttcagaatcccgatgatctc 1784163

to top

>emb|AJ305370.1|HSA305370 Homo sapiens mRNA for activating coreceptor NKp80 (ML/KLRF1 gene)
          Length = 1249

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 actttgatctccttgatcct 195
           ||||||||||||||||||||
Sbjct: 207 actttgatctccttgatcct 226

to top

>gb|AC007068.17| Homo sapiens 12p BAC RPCI11-75L1 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 178607

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   actttgatctccttgatcct 195
             ||||||||||||||||||||
Sbjct: 31126 actttgatctccttgatcct 31107

to top

>gb|AF267245.1|AF267245 Homo sapiens killer cell lectin-like receptor KLRF1-S3 (KLRF1)
           mRNA, complete cds., alternatively spliced
          Length = 839

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 actttgatctccttgatcct 195
           ||||||||||||||||||||
Sbjct: 224 actttgatctccttgatcct 243

to top

>gb|AF267244.1|AF267244 Homo sapiens killer cell lectin-like receptor KLRF1-S2 (KLRF1)
           mRNA, complete cds., alternatively spliced
          Length = 952

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 actttgatctccttgatcct 195
           ||||||||||||||||||||
Sbjct: 224 actttgatctccttgatcct 243

to top

>gb|AY747799.1| Nomonyx dominicus voucher UAM 14601 (KGM 476) D-loop and tRNA-Phe
           gene, partial sequence; mitochondrial
          Length = 1004

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 375 gaagtactttcaccttctca 394
           ||||||||||||||||||||
Sbjct: 468 gaagtactttcaccttctca 487

to top

>gb|AY747798.1| Nomonyx dominicus voucher UAM 14785 (KGM 466) D-loop and tRNA-Phe
           gene, partial sequence; mitochondrial
          Length = 1062

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 375 gaagtactttcaccttctca 394
           ||||||||||||||||||||
Sbjct: 468 gaagtactttcaccttctca 487

to top

>gb|AY747797.1| Nomonyx dominicus voucher UAM 14785 (KGM 466) D-loop and tRNA-Phe
           gene, partial sequence; mitochondrial
          Length = 1004

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 375 gaagtactttcaccttctca 394
           ||||||||||||||||||||
Sbjct: 468 gaagtactttcaccttctca 487

to top

>gb|AY747796.1| Nomonyx dominicus voucher UAM 19510 (KGM 465) D-loop and tRNA-Phe
           gene, partial sequence; mitochondrial
          Length = 1055

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 375 gaagtactttcaccttctca 394
           ||||||||||||||||||||
Sbjct: 468 gaagtactttcaccttctca 487

to top

>gb|AY747795.1| Nomonyx dominicus voucher UAM 14784 (KGM 464) D-loop and tRNA-Phe
           gene, partial sequence; mitochondrial
          Length = 1062

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 375 gaagtactttcaccttctca 394
           ||||||||||||||||||||
Sbjct: 468 gaagtactttcaccttctca 487

to top

>gb|AY747794.1| Nomonyx dominicus voucher UAM 14784 (KGM 464) D-loop and tRNA-Phe
           gene, partial sequence; mitochondrial
          Length = 1004

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 375 gaagtactttcaccttctca 394
           ||||||||||||||||||||
Sbjct: 468 gaagtactttcaccttctca 487

to top

>gb|AY747790.1| Nomonyx dominicus voucher LSUMZ 123431 D-loop and tRNA-Phe gene,
           partial sequence; mitochondrial
          Length = 1097

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 375 gaagtactttcaccttctca 394
           ||||||||||||||||||||
Sbjct: 468 gaagtactttcaccttctca 487

to top

>gb|BC040358.1| Homo sapiens, clone IMAGE:4340526, mRNA
          Length = 4487

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 80   gaggagcgtgtctaatctca 99
            ||||||||||||||||||||
Sbjct: 2724 gaggagcgtgtctaatctca 2705

to top

>gb|BC098354.1| Homo sapiens killer cell lectin-like receptor subfamily F, member
           1, mRNA (cDNA clone MGC:119906 IMAGE:40015531), complete
           cds
          Length = 852

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 actttgatctccttgatcct 195
           ||||||||||||||||||||
Sbjct: 184 actttgatctccttgatcct 203

to top

>gb|AF175207.1|AF175207 Homo sapiens lectin-like receptor F1, splice variant 1 KLRF1-s1
           (KLRF1) mRNA, complete cds
          Length = 1092

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 actttgatctccttgatcct 195
           ||||||||||||||||||||
Sbjct: 224 actttgatctccttgatcct 243

to top

>gb|AF175206.1|AF175206 Homo sapiens lectin-like receptor F1 (KLRF1) mRNA, complete cds
          Length = 1242

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 actttgatctccttgatcct 195
           ||||||||||||||||||||
Sbjct: 224 actttgatctccttgatcct 243

to top

>gb|BC098166.1| Homo sapiens killer cell lectin-like receptor subfamily F, member
           1, mRNA (cDNA clone MGC:119908 IMAGE:40015535), complete
           cds
          Length = 730

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 actttgatctccttgatcct 195
           ||||||||||||||||||||
Sbjct: 184 actttgatctccttgatcct 203

to top

>gb|BC096734.1| Homo sapiens killer cell lectin-like receptor subfamily F, member
           1, mRNA (cDNA clone IMAGE:40015537), complete cds
          Length = 598

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 actttgatctccttgatcct 195
           ||||||||||||||||||||
Sbjct: 184 actttgatctccttgatcct 203

to top

>gb|BC098257.1| Homo sapiens killer cell lectin-like receptor subfamily F, member
           1, mRNA (cDNA clone MGC:119907 IMAGE:40015534), complete
           cds
          Length = 711

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 actttgatctccttgatcct 195
           ||||||||||||||||||||
Sbjct: 184 actttgatctccttgatcct 203

to top

>emb|AJ534355.1|ABI534355 Agaricus bisporus partial mRNA for putative glyoxylate pathway
           regulator (gpr gene), clone pm71
          Length = 520

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 149 gccctcctcaccttcttgtg 168
           ||||||||||||||||||||
Sbjct: 313 gccctcctcaccttcttgtg 332

to top

>gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome
          Length = 1080084

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    aggtagtacaactttgccct 153
              ||||||||||||||||||||
Sbjct: 300959 aggtagtacaactttgccct 300940

to top

>gb|AC107884.15| Homo sapiens chromosome 11, clone CTD-2516F10, complete sequence
          Length = 177416

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 80     gaggagcgtgtctaatctca 99
              ||||||||||||||||||||
Sbjct: 149325 gaggagcgtgtctaatctca 149306


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,861,917
Number of Sequences: 3902068
Number of extensions: 3861917
Number of successful extensions: 64776
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64678
Number of HSP's gapped (non-prelim): 98
length of query: 473
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 451
effective length of database: 17,147,199,772
effective search space: 7733387097172
effective search space used: 7733387097172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result