ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags6j21 |
|---|---|
| Clone Library Name | barley_pub |
>YCF44_GUITH (O78437) Hypothetical 47.8 kDa protein ycf44| Length = 414 Score = 77.4 bits (189), Expect = 3e-14 Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 1/117 (0%) Frame = -2 Query: 616 KGISMLARDLQSIV-LYDQDGKFVGVRRPSSKLPIEINGNEILIEDAIGSTGLDLKTDPG 440 + + + DL IV LY+Q+ + + I +NG+ I + STGL K D Sbjct: 299 QSVFCVVNDLTGIVYLYNQNKDLICISSLGEF--ITLNGHTITFNKLVASTGLQFKLDSF 356 Query: 439 IPIVYAGFGALMLTTCISYLSHAQLWALQDGTTVVVGGKSNRAKIEFSDEMNRLLNK 269 IP+VY GF LM++T +SY+S++Q+W +++G+T + G +NRAK F ++ + N+ Sbjct: 357 IPLVYLGFLLLMISTLLSYISYSQVWLVKNGSTTYIFGSTNRAKFAFIKQLTEIANQ 413
>YCF44_PORPU (P51363) Hypothetical 50.2 kDa protein ycf44 (ORF437)| Length = 437 Score = 73.2 bits (178), Expect = 6e-13 Identities = 38/115 (33%), Positives = 69/115 (60%), Gaps = 1/115 (0%) Frame = -2 Query: 610 ISMLARDLQS-IVLYDQDGKFVGVRRPSSKLPIEINGNEILIEDAIGSTGLDLKTDPGIP 434 ++++ +DLQ LY++ G+ + K I+ N I + STGL +K+DPGIP Sbjct: 321 LALVLQDLQKQATLYNKSGEKIMSVTIGEKYFID--NNIIAFLSIVPSTGLQIKSDPGIP 378 Query: 433 IVYAGFGALMLTTCISYLSHAQLWALQDGTTVVVGGKSNRAKIEFSDEMNRLLNK 269 IVY F L+ + +SY+S++Q+W ++ +GG +NRA++ F +E+ ++ N+ Sbjct: 379 IVYTSFFFLITSVSVSYISYSQIWIIEKKHRFYIGGVTNRAQLTFEEELLKISNR 433
>YCF44_ODOSI (P49539) Hypothetical 43.8 kDa protein ycf44 (ORF382)| Length = 382 Score = 44.3 bits (103), Expect = 3e-04 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Frame = -2 Query: 631 DSSGVKGISMLARDLQSIV-LYDQDGKFVGVRRPSSKLPIEINGNEILIEDAIGSTGLDL 455 DS KG+++L +LQ +YD+ G FVG + + + I + D + STGL + Sbjct: 304 DSEFKKGLTILVDNLQGYCSIYDESGIFVGNLELNETFNLNM---PITLVDILSSTGLQI 360 Query: 454 KTDPGIP 434 KTDPGIP Sbjct: 361 KTDPGIP 367
>YCF44_CYACA (O19913) Hypothetical 45.3 kDa protein ycf44| Length = 396 Score = 32.3 bits (72), Expect = 1.2 Identities = 19/64 (29%), Positives = 32/64 (50%) Frame = -2 Query: 574 LYDQDGKFVGVRRPSSKLPIEINGNEILIEDAIGSTGLDLKTDPGIPIVYAGFGALMLTT 395 +YD + F+ + + ++ P I + I TGL +K D I IVY GF L++ Sbjct: 328 VYDNNQNFLKIGKINT--PQLIRNTYFTVISKISGTGLQIKKDSSINIVYTGFLLLIIGL 385 Query: 394 CISY 383 I++ Sbjct: 386 VINH 389
>HEPA_HHV2H (P89431) DNA helicase/primase complex-associated protein| Length = 752 Score = 30.4 bits (67), Expect = 4.6 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -2 Query: 145 DKCLWRTGNACILFGEDNSCAHWAVYSPLR 56 D LWR AC+L + WA++ PLR Sbjct: 94 DPTLWRALYACVLAALERQTGRWALFVPLR 123
>RPOB_PLAFA (P21421) DNA-directed RNA polymerase beta chain (EC 2.7.7.6)| Length = 1024 Score = 30.0 bits (66), Expect = 6.0 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = +2 Query: 479 SVFN*YFITIDFNGEFRARSTNSYKLTILVIQHNRLKI 592 ++FN F I FN + ++ N K TIL I N KI Sbjct: 418 NIFNKNFYNISFNNIYLKKNINFNKTTILTINKNTFKI 455
>CCPR2_CRYNE (Q5KGE6) Putative heme-binding peroxidase (EC 1.11.1.-)| Length = 315 Score = 30.0 bits (66), Expect = 6.0 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 6/73 (8%) Frame = -2 Query: 526 KLPIEINGNEILIEDAIGSTGLDLKTDP------GIPIVYAGFGALMLTTCISYLSHAQL 365 +L +GN L+E GS G ++ P + YA L L + S++SHA L Sbjct: 36 RLAWHASGNFSLVEHNGGSNGAGMRFPPESVDPANAGLHYAISFLLPLQSANSWISHADL 95 Query: 364 WALQDGTTVVVGG 326 W L T + G Sbjct: 96 WTLAGVTAIEAMG 108
>SUT21_ARATH (O04722) Sulfate transporter 2.1 (AST68)| Length = 677 Score = 30.0 bits (66), Expect = 6.0 Identities = 17/52 (32%), Positives = 23/52 (44%) Frame = -2 Query: 484 DAIGSTGLDLKTDPGIPIVYAGFGALMLTTCISYLSHAQLWALQDGTTVVVG 329 D +G L L T I A FG L + +LSHA + G +V+G Sbjct: 192 DPLGYKKLVLTTTFFAGIFQASFGLFRLGFLVDFLSHAAIVGFMGGAAIVIG 243
>ACEK_ECOLI (P11071) Isocitrate dehydrogenase kinase/phosphatase (EC 2.7.11.5)| (EC 3.1.3.-) (IDH kinase/phosphatase) (IDHK/P) Length = 578 Score = 29.6 bits (65), Expect = 7.8 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 2/43 (4%) Frame = -2 Query: 151 FIDKCLWRTGNACILFGEDNSCAHWAVYSPLRPNLFE--RKIL 29 FID CL T A I+FG S ++ VY+PL L E R+IL Sbjct: 235 FIDTCLTTTAEASIVFGFARS--YFMVYAPLPAALVEWLREIL 275
>ACEK_ECO57 (Q8X607) Isocitrate dehydrogenase kinase/phosphatase (EC 2.7.11.5)| (EC 3.1.3.-) (IDH kinase/phosphatase) (IDHK/P) Length = 578 Score = 29.6 bits (65), Expect = 7.8 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 2/43 (4%) Frame = -2 Query: 151 FIDKCLWRTGNACILFGEDNSCAHWAVYSPLRPNLFE--RKIL 29 FID CL T A I+FG S ++ VY+PL L E R+IL Sbjct: 235 FIDTCLTTTAEASIVFGFARS--YFMVYAPLPAALVEWLREIL 275
>ACEK_ECOL6 (Q8FB61) Isocitrate dehydrogenase kinase/phosphatase (EC 2.7.11.5)| (EC 3.1.3.-) (IDH kinase/phosphatase) (IDHK/P) Length = 574 Score = 29.6 bits (65), Expect = 7.8 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 2/43 (4%) Frame = -2 Query: 151 FIDKCLWRTGNACILFGEDNSCAHWAVYSPLRPNLFE--RKIL 29 FID CL T A I+FG S ++ VY+PL L E R+IL Sbjct: 235 FIDTCLTTTAEASIVFGFARS--YFMVYAPLPAALVEWLREIL 275 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,206,412 Number of Sequences: 219361 Number of extensions: 1884303 Number of successful extensions: 4654 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4562 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4654 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5881538857 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
