ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6j21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK100054.1| Oryza sativa (japonica cultivar-group) cDNA clon... 309 6e-81
2gb|AC133450.6| Oryza sativa chromosome 3 BAC OSJNBa0072F13 genom... 129 1e-26
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 129 1e-26
4gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genom... 129 1e-26
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
6gb|BT013135.1| Lycopersicon esculentum clone 114437F, mRNA sequence 52 0.002
7gb|AF186191.6| Homo sapiens chromosome 8 clone CTC-259J15 map 8q... 48 0.035
8gb|AF155238.4| Homo sapiens chromosome 8 clone GS1-180I23 map 8q... 48 0.035
9ref|XM_646543.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 44 0.55
10ref|XM_661738.1| Cryptosporidium hominis TU502 hypothetical prot... 44 0.55
11gb|AC156642.2| Mus musculus BAC clone RP23-254J5 from chromosome... 44 0.55
12gb|AC155926.2| Mus musculus BAC clone RP24-130A6 from 9, complet... 44 0.55
13gb|AC123071.3| Mus musculus BAC clone RP23-70P8 from chromosome ... 42 2.2
14gb|AC131720.2| Mus musculus BAC clone RP23-137I3 from chromosome... 42 2.2
15emb|CR626872.8| Zebrafish DNA sequence from clone DKEY-38L22 in ... 42 2.2
16emb|BX548045.6| Zebrafish DNA sequence from clone DKEY-224A6 in ... 42 2.2
17gb|AE017159.1| Chlamydophila pneumoniae TW-183, section 3 of 4 o... 42 2.2
18emb|Z67753.1|OSCHLPLXX Odontella sinensis complete chloroplast g... 42 2.2
19gb|AC022858.8| Homo sapiens chromosome 8, clone RP11-326E22, com... 42 2.2
20gb|AE002161.1| Chlamydophila pneumoniae AR39, complete genome 42 2.2
21gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 2.2
22emb|BX088562.12| Zebrafish DNA sequence from clone CH211-286C4 i... 42 2.2
23gb|AC021945.14| Homo sapiens chromosome 8, clone RP11-85I17, com... 42 2.2
24gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome 42 2.2
25dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, compl... 42 2.2
26emb|CR450687.16| Zebrafish DNA sequence from clone CH211-204A13 ... 42 2.2
27emb|BX855593.12| Zebrafish DNA sequence from clone DKEY-286J2 in... 42 2.2
28gb|AC148992.3| Mus musculus BAC clone RP24-337C15 from 10, compl... 42 2.2
29emb|BX842613.7| Zebrafish DNA sequence from clone CH211-227J9 in... 42 2.2
30dbj|AP005717.3| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 2.2
31gb|AC147250.4| Mus musculus BAC clone RP24-109P17 from 13, compl... 42 2.2
32gb|AC156936.5| Mus musculus BAC clone RP24-90K8 from chromosome ... 40 8.6
33gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete g... 40 8.6
34ref|XM_418320.1| PREDICTED: Gallus gallus similar to carbonic an... 40 8.6
35gb|AC147058.3| Pan troglodytes BAC clone RP43-154B16 from 7, com... 40 8.6
36ref|XM_992997.1| PREDICTED: Mus musculus RIKEN cDNA 4930502E18 g... 40 8.6
37ref|XM_135429.3| PREDICTED: Mus musculus RIKEN cDNA 4930502E18 g... 40 8.6
38ref|XM_914296.2| PREDICTED: Mus musculus RIKEN cDNA 4930502E18 g... 40 8.6
39gb|AC004931.1| Homo sapiens PAC clone RP5-922I23 from 7, complet... 40 8.6
40gb|AC145895.2| Pan troglodytes BAC clone RP43-8H7 from 7, comple... 40 8.6
41emb|Z35662.1|CEF10G11 Caenorhabditis elegans Cosmid F10G11, comp... 40 8.6
42emb|CR932959.2| Medicago truncatula chromosome 5 clone mte1-55f1... 40 8.6
43gb|AC123575.10| Medicago truncatula clone mth1-31p6, complete se... 40 8.6
44gb|AC163161.4| Mus musculus BAC clone RP23-103A23 from chromosom... 40 8.6
45emb|AL365434.13| Human DNA sequence from clone RP11-236B18 on ch... 40 8.6
46emb|AL357275.14| Human DNA sequence from clone RP11-534J23 on ch... 40 8.6
47emb|BX897699.1| Bartonella henselae strain Houston-1, complete g... 40 8.6
48gb|AC159300.3| Mus musculus BAC clone RP23-242D23 from chromosom... 40 8.6
49emb|BX088573.4| Mouse DNA sequence from clone RP23-78N10 on chro... 40 8.6
50gb|AC123024.12| Homo sapiens 12 BAC RP11-264E13 (Roswell Park Ca... 40 8.6
51gb|AC123025.5| Homo sapiens 12 BAC RP11-642J16 (Roswell Park Can... 40 8.6
52emb|CR385052.5| Zebrafish DNA sequence from clone CH211-166F3 in... 40 8.6
53emb|BX001032.12| Zebrafish DNA sequence from clone CH211-14K18 i... 40 8.6
54dbj|AK015678.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 8.6
55ref|NM_065516.2| Caenorhabditis elegans CaDHerin family member (... 40 8.6
56emb|CR352666.1| Gallus gallus finished cDNA, clone ChEST1012l19 40 8.6
57dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
58emb|BX890605.4| Mouse DNA sequence from clone RP23-29K12 on chro... 40 8.6
59gb|AC103563.5| Homo sapiens BAC clone RP11-708D7 from 2, complet... 40 8.6
60gb|AC092126.3| Homo sapiens chromosome 16 clone RP11-1114G22, co... 40 8.6
61gb|AC018846.5| Homo sapiens chromosome 16 clone RP11-370P15, com... 40 8.6
62dbj|AP003289.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
63gb|AC069251.5|AC069251 Genomic sequence for Arabidopsis thaliana... 40 8.6
64gb|AY609732.1| Sus scrofa clone Clu_2818.scr.msk.p1.Contig2, mRN... 40 8.6
65gb|AC124735.4| Mus musculus BAC clone RP23-310O18 from 5, comple... 40 8.6
66emb|AL845283.4| Mouse DNA sequence from clone RP23-151F21 on chr... 40 8.6
67emb|AL671900.5| Mouse DNA sequence from clone RP23-282O5 on chro... 40 8.6
68emb|AL691513.13| Mouse DNA sequence from clone RP23-451C8 on chr... 40 8.6 
>dbj|AK100054.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157P08, full
            insert sequence
          Length = 2141

 Score =  309 bits (156), Expect = 6e-81
 Identities = 291/336 (86%)
 Strand = Plus / Minus

                                                                        
Query: 285  ttcatctcatcagaaaattcaattttggctcgattggacttccctccgacaactactgta 344
            |||||||| || ||||||||||  ||||||||||| | ||| |||||||  |||||||||
Sbjct: 1675 ttcatctcttctgaaaattcaagcttggctcgatttgtctttcctccgatgactactgta 1616

                                                                        
Query: 345  gttccatcttgcagcgcccataactgagcatgcgaaagatagctaatgcaggtcgtcagc 404
             |||| |||||||  ||||||| ||||| ||| |||||||| |||||||||||||| | |
Sbjct: 1615 cttccgtcttgcaatgcccatatctgagaatgtgaaagataactaatgcaggtcgttaac 1556

                                                                        
Query: 405  atgagtgcgccaaatccagcatacacgataggaattcctggatcagtcttgagatccaga 464
            |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct: 1555 atgagtgcaccaaatccagcatacacaataggaattcctggatcagtcttaagatcgaga 1496

                                                                        
Query: 465  ccggtactgccaatagcgtcttcaattagtatttcattaccattgatttcaatggggagt 524
            ||||| || || || || |||||||| | |||||| |||||||  |||||||| || |||
Sbjct: 1495 ccggtgctaccgatggcatcttcaataactatttcgttaccatctatttcaatcggtagt 1436

                                                                        
Query: 525  ttagagctcggtcgacgaactcctacaaacttaccatcttggtcatacaacacaatagac 584
            || ||||| || |||||||| || ||||||||||| ||||| ||||||||||||||||||
Sbjct: 1435 tttgagcttggccgacgaacccccacaaacttaccctcttgatcatacaacacaatagac 1376

                                                
Query: 585  tgaagatctcgagcaagcattgatattcccttgaca 620
            || ||||||||||||||||| |||||||| ||||||
Sbjct: 1375 tgcagatctcgagcaagcatcgatattcctttgaca 1340
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>gb|AC133450.6| Oryza sativa chromosome 3 BAC OSJNBa0072F13 genomic sequence, complete
              sequence
          Length = 150743

 Score =  129 bits (65), Expect = 1e-26
 Identities = 128/149 (85%)
 Strand = Plus / Minus

                                                                          
Query: 456    agatccagaccggtactgccaatagcgtcttcaattagtatttcattaccattgatttca 515
              ||||| |||||||| || || || || |||||||| | |||||| |||||||  ||||||
Sbjct: 123236 agatcgagaccggtgctaccgatggcatcttcaataactatttcgttaccatctatttca 123177

                                                                          
Query: 516    atggggagtttagagctcggtcgacgaactcctacaaacttaccatcttggtcatacaac 575
              || || ||||| ||||| || |||||||| || ||||||||||| ||||| |||||||||
Sbjct: 123176 atcggtagttttgagcttggccgacgaacccccacaaacttaccctcttgatcatacaac 123117

                                           
Query: 576    acaatagactgaagatctcgagcaagcat 604
              ||||||||||| |||||||||||||||||
Sbjct: 123116 acaatagactgcagatctcgagcaagcat 123088



 Score =  115 bits (58), Expect = 2e-22
 Identities = 79/86 (91%)
 Strand = Plus / Minus

                                                                          
Query: 368    ctgagcatgcgaaagatagctaatgcaggtcgtcagcatgagtgcgccaaatccagcata 427
              ||||| ||| |||||||| |||||||||||||| | ||||||||| ||||||||||||||
Sbjct: 123421 ctgagaatgtgaaagataactaatgcaggtcgttaacatgagtgcaccaaatccagcata 123362

                                        
Query: 428    cacgataggaattcctggatcagtct 453
              ||| ||||||||||||||||||||||
Sbjct: 123361 cacaataggaattcctggatcagtct 123336



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                          
Query: 285    ttcatctcatcagaaaattcaattttggctcgattggacttccctccgacaactactgta 344
              |||||||| || ||||||||||  ||||||||||| | ||| |||||||  |||||||||
Sbjct: 123591 ttcatctcttctgaaaattcaagcttggctcgatttgtctttcctccgatgactactgta 123532

                                    
Query: 345    gttccatcttgcagcgcccata 366
               |||| |||||||  |||||||
Sbjct: 123531 cttccgtcttgcaatgcccata 123510
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  129 bits (65), Expect = 1e-26
 Identities = 128/149 (85%)
 Strand = Plus / Plus

                                                                            
Query: 456      agatccagaccggtactgccaatagcgtcttcaattagtatttcattaccattgatttca 515
                ||||| |||||||| || || || || |||||||| | |||||| |||||||  ||||||
Sbjct: 31557431 agatcgagaccggtgctaccgatggcatcttcaataactatttcgttaccatctatttca 31557490

                                                                            
Query: 516      atggggagtttagagctcggtcgacgaactcctacaaacttaccatcttggtcatacaac 575
                || || ||||| ||||| || |||||||| || ||||||||||| ||||| |||||||||
Sbjct: 31557491 atcggtagttttgagcttggccgacgaacccccacaaacttaccctcttgatcatacaac 31557550

                                             
Query: 576      acaatagactgaagatctcgagcaagcat 604
                ||||||||||| |||||||||||||||||
Sbjct: 31557551 acaatagactgcagatctcgagcaagcat 31557579



 Score =  115 bits (58), Expect = 2e-22
 Identities = 79/86 (91%)
 Strand = Plus / Plus

                                                                            
Query: 368      ctgagcatgcgaaagatagctaatgcaggtcgtcagcatgagtgcgccaaatccagcata 427
                ||||| ||| |||||||| |||||||||||||| | ||||||||| ||||||||||||||
Sbjct: 31557246 ctgagaatgtgaaagataactaatgcaggtcgttaacatgagtgcaccaaatccagcata 31557305

                                          
Query: 428      cacgataggaattcctggatcagtct 453
                ||| ||||||||||||||||||||||
Sbjct: 31557306 cacaataggaattcctggatcagtct 31557331



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 69/82 (84%)
 Strand = Plus / Plus

                                                                            
Query: 285      ttcatctcatcagaaaattcaattttggctcgattggacttccctccgacaactactgta 344
                |||||||| || ||||||||||  ||||||||||| | ||| |||||||  |||||||||
Sbjct: 31557076 ttcatctcttctgaaaattcaagcttggctcgatttgtctttcctccgatgactactgta 31557135

                                      
Query: 345      gttccatcttgcagcgcccata 366
                 |||| |||||||  |||||||
Sbjct: 31557136 cttccgtcttgcaatgcccata 31557157
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>gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete
             sequence
          Length = 133449

 Score =  129 bits (65), Expect = 1e-26
 Identities = 128/149 (85%)
 Strand = Plus / Minus

                                                                         
Query: 456   agatccagaccggtactgccaatagcgtcttcaattagtatttcattaccattgatttca 515
             ||||| |||||||| || || || || |||||||| | |||||| |||||||  ||||||
Sbjct: 35175 agatcgagaccggtgctaccgatggcatcttcaataactatttcgttaccatctatttca 35116

                                                                         
Query: 516   atggggagtttagagctcggtcgacgaactcctacaaacttaccatcttggtcatacaac 575
             || || ||||| ||||| || |||||||| || ||||||||||| ||||| |||||||||
Sbjct: 35115 atcggtagttttgagcttggccgacgaacccccacaaacttaccctcttgatcatacaac 35056

                                          
Query: 576   acaatagactgaagatctcgagcaagcat 604
             ||||||||||| |||||||||||||||||
Sbjct: 35055 acaatagactgcagatctcgagcaagcat 35027



 Score =  115 bits (58), Expect = 2e-22
 Identities = 79/86 (91%)
 Strand = Plus / Minus

                                                                         
Query: 368   ctgagcatgcgaaagatagctaatgcaggtcgtcagcatgagtgcgccaaatccagcata 427
             ||||| ||| |||||||| |||||||||||||| | ||||||||| ||||||||||||||
Sbjct: 35360 ctgagaatgtgaaagataactaatgcaggtcgttaacatgagtgcaccaaatccagcata 35301

                                       
Query: 428   cacgataggaattcctggatcagtct 453
             ||| ||||||||||||||||||||||
Sbjct: 35300 cacaataggaattcctggatcagtct 35275



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                         
Query: 285   ttcatctcatcagaaaattcaattttggctcgattggacttccctccgacaactactgta 344
             |||||||| || ||||||||||  ||||||||||| | ||| |||||||  |||||||||
Sbjct: 35530 ttcatctcttctgaaaattcaagcttggctcgatttgtctttcctccgatgactactgta 35471

                                   
Query: 345   gttccatcttgcagcgcccata 366
              |||| |||||||  |||||||
Sbjct: 35470 cttccgtcttgcaatgcccata 35449
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  129 bits (65), Expect = 1e-26
 Identities = 128/149 (85%)
 Strand = Plus / Plus

                                                                            
Query: 456      agatccagaccggtactgccaatagcgtcttcaattagtatttcattaccattgatttca 515
                ||||| |||||||| || || || || |||||||| | |||||| |||||||  ||||||
Sbjct: 31647937 agatcgagaccggtgctaccgatggcatcttcaataactatttcgttaccatctatttca 31647996

                                                                            
Query: 516      atggggagtttagagctcggtcgacgaactcctacaaacttaccatcttggtcatacaac 575
                || || ||||| ||||| || |||||||| || ||||||||||| ||||| |||||||||
Sbjct: 31647997 atcggtagttttgagcttggccgacgaacccccacaaacttaccctcttgatcatacaac 31648056

                                             
Query: 576      acaatagactgaagatctcgagcaagcat 604
                ||||||||||| |||||||||||||||||
Sbjct: 31648057 acaatagactgcagatctcgagcaagcat 31648085



 Score =  115 bits (58), Expect = 2e-22
 Identities = 79/86 (91%)
 Strand = Plus / Plus

                                                                            
Query: 368      ctgagcatgcgaaagatagctaatgcaggtcgtcagcatgagtgcgccaaatccagcata 427
                ||||| ||| |||||||| |||||||||||||| | ||||||||| ||||||||||||||
Sbjct: 31647752 ctgagaatgtgaaagataactaatgcaggtcgttaacatgagtgcaccaaatccagcata 31647811

                                          
Query: 428      cacgataggaattcctggatcagtct 453
                ||| ||||||||||||||||||||||
Sbjct: 31647812 cacaataggaattcctggatcagtct 31647837



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 69/82 (84%)
 Strand = Plus / Plus

                                                                            
Query: 285      ttcatctcatcagaaaattcaattttggctcgattggacttccctccgacaactactgta 344
                |||||||| || ||||||||||  ||||||||||| | ||| |||||||  |||||||||
Sbjct: 31647582 ttcatctcttctgaaaattcaagcttggctcgatttgtctttcctccgatgactactgta 31647641

                                      
Query: 345      gttccatcttgcagcgcccata 366
                 |||| |||||||  |||||||
Sbjct: 31647642 cttccgtcttgcaatgcccata 31647663
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>gb|BT013135.1| Lycopersicon esculentum clone 114437F, mRNA sequence
          Length = 2091

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 89/110 (80%)
 Strand = Plus / Minus

                                                                        
Query: 345  gttccatcttgcagcgcccataactgagcatgcgaaagatagctaatgcaggtcgtcagc 404
            |||||||||||||  ||||||| ||| | ||| || | ||| || ||||| || || |||
Sbjct: 1627 gttccatcttgcaaggcccatagctgtgtatgagataaataactgatgcaagttgtaagc 1568

                                                              
Query: 405  atgagtgcgccaaatccagcatacacgataggaattcctggatcagtctt 454
            ||||| || ||||| |||||||| || | ||| | |||||||||||||||
Sbjct: 1567 atgagagcaccaaaaccagcatatacaacaggtactcctggatcagtctt 1518
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>gb|AF186191.6| Homo sapiens chromosome 8 clone CTC-259J15 map 8q24.3, complete
             sequence
          Length = 104637

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 163   ccaacagctgcatcttcagcaatc 186
             ||||||||||||||||||||||||
Sbjct: 52402 ccaacagctgcatcttcagcaatc 52425
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>gb|AF155238.4| Homo sapiens chromosome 8 clone GS1-180I23 map 8q24.3, complete
             sequence
          Length = 104923

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 163   ccaacagctgcatcttcagcaatc 186
             ||||||||||||||||||||||||
Sbjct: 11773 ccaacagctgcatcttcagcaatc 11796
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>ref|XM_646543.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (154.t00007)
           partial mRNA
          Length = 1191

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 91  aattgtcttcaccaaatagaat 112
           ||||||||||||||||||||||
Sbjct: 257 aattgtcttcaccaaatagaat 278
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>ref|XM_661738.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.30194)
           partial mRNA
          Length = 1275

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 33  attttcctttcaaataaatttg 54
           ||||||||||||||||||||||
Sbjct: 445 attttcctttcaaataaatttg 466
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>gb|AC156642.2| Mus musculus BAC clone RP23-254J5 from chromosome 9, complete sequence
          Length = 193872

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 491    tagtatttcattaccattgatt 512
              ||||||||||||||||||||||
Sbjct: 156458 tagtatttcattaccattgatt 156479
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>gb|AC155926.2| Mus musculus BAC clone RP24-130A6 from 9, complete sequence
          Length = 166516

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 491   tagtatttcattaccattgatt 512
             ||||||||||||||||||||||
Sbjct: 20157 tagtatttcattaccattgatt 20178
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>gb|AC123071.3| Mus musculus BAC clone RP23-70P8 from chromosome 13, complete sequence
          Length = 252384

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 34    ttttcctttcaaataaatttg 54
             |||||||||||||||||||||
Sbjct: 38006 ttttcctttcaaataaatttg 37986
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>gb|AC131720.2| Mus musculus BAC clone RP23-137I3 from chromosome 10, complete sequence
          Length = 207949

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 42    tcaaataaatttggcctcaatggtgaata 70
             ||||||||||||||| |||||| ||||||
Sbjct: 13347 tcaaataaatttggcttcaatgttgaata 13319
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>emb|CR626872.8| Zebrafish DNA sequence from clone DKEY-38L22 in linkage group 7, complete
              sequence
          Length = 126802

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 164    caacagctgcatcttcagcaa 184
              |||||||||||||||||||||
Sbjct: 112466 caacagctgcatcttcagcaa 112486
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>emb|BX548045.6| Zebrafish DNA sequence from clone DKEY-224A6 in linkage group 17,
              complete sequence
          Length = 185946

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 164    caacagctgcatcttcagcaa 184
              |||||||||||||||||||||
Sbjct: 132136 caacagctgcatcttcagcaa 132116
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>gb|AE017159.1| Chlamydophila pneumoniae TW-183, section 3 of 4 of the complete genome
          Length = 300066

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 172    gcatcttcagcaatctcaatc 192
              |||||||||||||||||||||
Sbjct: 241569 gcatcttcagcaatctcaatc 241589
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>emb|Z67753.1|OSCHLPLXX Odontella sinensis complete chloroplast genome
          Length = 119704

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 33     attttcctttcaaataaattt 53
              |||||||||||||||||||||
Sbjct: 109860 attttcctttcaaataaattt 109840
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>gb|AC022858.8| Homo sapiens chromosome 8, clone RP11-326E22, complete sequence
          Length = 187340

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 288   atctcatcagaaaattcaatt 308
             |||||||||||||||||||||
Sbjct: 53203 atctcatcagaaaattcaatt 53183
to top
>gb|AE002161.1| Chlamydophila pneumoniae AR39, complete genome
          Length = 1229853

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 172     gcatcttcagcaatctcaatc 192
               |||||||||||||||||||||
Sbjct: 1226013 gcatcttcagcaatctcaatc 1225993
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 66      gaatacacggcccaatgggca 86
               |||||||||||||||||||||
Sbjct: 2565822 gaatacacggcccaatgggca 2565842
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>emb|BX088562.12| Zebrafish DNA sequence from clone CH211-286C4 in linkage group 25,
              complete sequence
          Length = 138646

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 164    caacagctgcatcttcagcaa 184
              |||||||||||||||||||||
Sbjct: 105160 caacagctgcatcttcagcaa 105180
to top
>gb|AC021945.14| Homo sapiens chromosome 8, clone RP11-85I17, complete sequence
          Length = 108780

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 349   catcttgcagcgcccataact 369
             |||||||||||||||||||||
Sbjct: 72617 catcttgcagcgcccataact 72637
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>gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome
          Length = 1230230

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 172    gcatcttcagcaatctcaatc 192
              |||||||||||||||||||||
Sbjct: 845430 gcatcttcagcaatctcaatc 845450
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>dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, complete sequence
          Length = 1226565

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 172    gcatcttcagcaatctcaatc 192
              |||||||||||||||||||||
Sbjct: 844751 gcatcttcagcaatctcaatc 844771
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>emb|CR450687.16| Zebrafish DNA sequence from clone CH211-204A13 in linkage group 19,
             complete sequence
          Length = 143150

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 164   caacagctgcatcttcagcaa 184
             |||||||||||||||||||||
Sbjct: 91218 caacagctgcatcttcagcaa 91238
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>emb|BX855593.12| Zebrafish DNA sequence from clone DKEY-286J2 in linkage group 19,
             complete sequence
          Length = 102409

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 164   caacagctgcatcttcagcaa 184
             |||||||||||||||||||||
Sbjct: 95852 caacagctgcatcttcagcaa 95872
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>gb|AC148992.3| Mus musculus BAC clone RP24-337C15 from 10, complete sequence
          Length = 164586

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 42    tcaaataaatttggcctcaatggtgaata 70
             ||||||||||||||| |||||| ||||||
Sbjct: 41425 tcaaataaatttggcttcaatgttgaata 41453
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>emb|BX842613.7| Zebrafish DNA sequence from clone CH211-227J9 in linkage group 19,
              complete sequence
          Length = 166128

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 164    caacagctgcatcttcagcaa 184
              |||||||||||||||||||||
Sbjct: 154089 caacagctgcatcttcagcaa 154069
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>dbj|AP005717.3| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1471A8, complete
             sequence
          Length = 169835

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 349   catcttgcagcgcccataact 369
             |||||||||||||||||||||
Sbjct: 34978 catcttgcagcgcccataact 34998
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>gb|AC147250.4| Mus musculus BAC clone RP24-109P17 from 13, complete sequence
          Length = 196150

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 34    ttttcctttcaaataaatttg 54
             |||||||||||||||||||||
Sbjct: 42179 ttttcctttcaaataaatttg 42199
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>gb|AC156936.5| Mus musculus BAC clone RP24-90K8 from chromosome 14, complete sequence
          Length = 203649

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     tattttcctttcaaataaat 51
              ||||||||||||||||||||
Sbjct: 194844 tattttcctttcaaataaat 194825
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>gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete genome
          Length = 2314078

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 495     atttcattaccattgatttc 514
               ||||||||||||||||||||
Sbjct: 1569487 atttcattaccattgatttc 1569506
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>ref|XM_418320.1| PREDICTED: Gallus gallus similar to carbonic anhydrase III
            (LOC420209), mRNA
          Length = 1944

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 497  ttcattaccattgatttcaa 516
            ||||||||||||||||||||
Sbjct: 1391 ttcattaccattgatttcaa 1410
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>gb|AC147058.3| Pan troglodytes BAC clone RP43-154B16 from 7, complete sequence
          Length = 161951

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 433   taggaattcctggatcagtc 452
             ||||||||||||||||||||
Sbjct: 33267 taggaattcctggatcagtc 33248
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>ref|XM_992997.1| PREDICTED: Mus musculus RIKEN cDNA 4930502E18 gene (4930502E18Rik),
           mRNA
          Length = 1427

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 290 ctcatcagaaaattcaattt 309
           ||||||||||||||||||||
Sbjct: 588 ctcatcagaaaattcaattt 569
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>ref|XM_135429.3| PREDICTED: Mus musculus RIKEN cDNA 4930502E18 gene (4930502E18Rik),
           mRNA
          Length = 1427

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 290 ctcatcagaaaattcaattt 309
           ||||||||||||||||||||
Sbjct: 588 ctcatcagaaaattcaattt 569
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>ref|XM_914296.2| PREDICTED: Mus musculus RIKEN cDNA 4930502E18 gene (4930502E18Rik),
           mRNA
          Length = 1427

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 290 ctcatcagaaaattcaattt 309
           ||||||||||||||||||||
Sbjct: 588 ctcatcagaaaattcaattt 569
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>gb|AC004931.1| Homo sapiens PAC clone RP5-922I23 from 7, complete sequence
          Length = 145844

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 497   ttcattaccattgatttcaatggg 520
             |||||| |||||||||||||||||
Sbjct: 62629 ttcattgccattgatttcaatggg 62606
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>gb|AC145895.2| Pan troglodytes BAC clone RP43-8H7 from 7, complete sequence
          Length = 170186

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 433   taggaattcctggatcagtc 452
             ||||||||||||||||||||
Sbjct: 76712 taggaattcctggatcagtc 76731
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>emb|Z35662.1|CEF10G11 Caenorhabditis elegans Cosmid F10G11, complete sequence
          Length = 2383

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 162 tccaacagctgcatcttcag 181
           ||||||||||||||||||||
Sbjct: 342 tccaacagctgcatcttcag 323
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>emb|CR932959.2| Medicago truncatula chromosome 5 clone mte1-55f11, COMPLETE SEQUENCE
          Length = 102868

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 505   cattgatttcaatggggagt 524
             ||||||||||||||||||||
Sbjct: 70966 cattgatttcaatggggagt 70985
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>gb|AC123575.10| Medicago truncatula clone mth1-31p6, complete sequence
          Length = 83007

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 505   cattgatttcaatggggagt 524
             ||||||||||||||||||||
Sbjct: 68016 cattgatttcaatggggagt 67997
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>gb|AC163161.4| Mus musculus BAC clone RP23-103A23 from chromosome 6, complete sequence
          Length = 224416

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 32     tattttcctttcaaataaatttgg 55
              ||||||||| ||||||||||||||
Sbjct: 151870 tattttcctgtcaaataaatttgg 151847
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>emb|AL365434.13| Human DNA sequence from clone RP11-236B18 on chromosome 10 Contains three
              novel genes and a DEAD/H (Asp-Glu-Ala-Asp/His) box
              polypeptide 18 (Myc-regulated) (DDX18) pseudogene, complete
              sequence
          Length = 158357

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     ctttcaaataaatttggcct 58
              ||||||||||||||||||||
Sbjct: 121439 ctttcaaataaatttggcct 121420
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>emb|AL357275.14| Human DNA sequence from clone RP11-534J23 on chromosome 13, complete
             sequence
          Length = 68209

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 215   agtacttgatttattatctactgt 238
             ||||||| ||||||||||||||||
Sbjct: 39092 agtactttatttattatctactgt 39069
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>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome
          Length = 1931047

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 288    atctcatcagaaaattcaat 307
              ||||||||||||||||||||
Sbjct: 383754 atctcatcagaaaattcaat 383735
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>gb|AC159300.3| Mus musculus BAC clone RP23-242D23 from chromosome 6, complete sequence
          Length = 200738

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 32     tattttcctttcaaataaatttgg 55
              ||||||||| ||||||||||||||
Sbjct: 165879 tattttcctgtcaaataaatttgg 165902
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>emb|BX088573.4| Mouse DNA sequence from clone RP23-78N10 on chromosome 4 Contains the
             3' end of the Dbccr1 gene for deleted in bladder cancer
             chromosome region candidate 1 (human), complete sequence
          Length = 203865

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 116   agcatttcctgttctccaaaggca 139
             ||||||||||||| ||||||||||
Sbjct: 15708 agcatttcctgttgtccaaaggca 15731
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>gb|AC123024.12| Homo sapiens 12 BAC RP11-264E13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 82875

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    ttttcctttcaaataaattt 53
             ||||||||||||||||||||
Sbjct: 62864 ttttcctttcaaataaattt 62883
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>gb|AC123025.5| Homo sapiens 12 BAC RP11-642J16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 89119

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    ttttcctttcaaataaattt 53
             ||||||||||||||||||||
Sbjct: 71108 ttttcctttcaaataaattt 71127
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>emb|CR385052.5| Zebrafish DNA sequence from clone CH211-166F3 in linkage group 1,
             complete sequence
          Length = 163401

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   caacagctgcatcttcagca 183
             ||||||||||||||||||||
Sbjct: 15166 caacagctgcatcttcagca 15185
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>emb|BX001032.12| Zebrafish DNA sequence from clone CH211-14K18 in linkage group 12,
             complete sequence
          Length = 162109

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 592   ctcgagcaagcattgatatt 611
             ||||||||||||||||||||
Sbjct: 44276 ctcgagcaagcattgatatt 44295
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>dbj|AK015678.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930502E18 product:hypothetical protein,
           full insert sequence
          Length = 1428

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 290 ctcatcagaaaattcaattt 309
           ||||||||||||||||||||
Sbjct: 589 ctcatcagaaaattcaattt 570
to top
>ref|NM_065516.2| Caenorhabditis elegans CaDHerin family member (cdh-4) (cdh-4) mRNA,
            complete cds
          Length = 13252

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 162  tccaacagctgcatcttcag 181
            ||||||||||||||||||||
Sbjct: 8121 tccaacagctgcatcttcag 8102
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>emb|CR352666.1| Gallus gallus finished cDNA, clone ChEST1012l19
          Length = 1934

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 497  ttcattaccattgatttcaa 516
            ||||||||||||||||||||
Sbjct: 1380 ttcattaccattgatttcaa 1399
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 31       atattttcctttcaaataaa 50
                ||||||||||||||||||||
Sbjct: 37109104 atattttcctttcaaataaa 37109123
to top
>emb|BX890605.4| Mouse DNA sequence from clone RP23-29K12 on chromosome 2, complete
              sequence
          Length = 148620

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 441    cctggatcagtcttgagatc 460
              ||||||||||||||||||||
Sbjct: 104489 cctggatcagtcttgagatc 104508
to top
>gb|AC103563.5| Homo sapiens BAC clone RP11-708D7 from 2, complete sequence
          Length = 131132

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 105    aatagaatgcaagcatttcc 124
              ||||||||||||||||||||
Sbjct: 109154 aatagaatgcaagcatttcc 109173
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>gb|AC092126.3| Homo sapiens chromosome 16 clone RP11-1114G22, complete sequence
          Length = 148883

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 224    tttattatctactgtttgct 243
              ||||||||||||||||||||
Sbjct: 108110 tttattatctactgtttgct 108091
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>gb|AC018846.5| Homo sapiens chromosome 16 clone RP11-370P15, complete sequence
          Length = 175519

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   tttattatctactgtttgct 243
             ||||||||||||||||||||
Sbjct: 23673 tttattatctactgtttgct 23654
to top
>dbj|AP003289.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0683F02
          Length = 153388

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     atattttcctttcaaataaa 50
              ||||||||||||||||||||
Sbjct: 110245 atattttcctttcaaataaa 110264
to top
>gb|AC069251.5|AC069251 Genomic sequence for Arabidopsis thaliana BAC F2D10 from chromosome I,
              complete sequence
          Length = 143879

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 550    caaacttaccatcttggtca 569
              ||||||||||||||||||||
Sbjct: 106533 caaacttaccatcttggtca 106552
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>gb|AY609732.1| Sus scrofa clone Clu_2818.scr.msk.p1.Contig2, mRNA sequence
          Length = 1586

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  caccaaatagaatgcaagca 119
            ||||||||||||||||||||
Sbjct: 1538 caccaaatagaatgcaagca 1519
to top
>gb|AC124735.4| Mus musculus BAC clone RP23-310O18 from 5, complete sequence
          Length = 203527

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 571    acaacacaatagactgaaga 590
              ||||||||||||||||||||
Sbjct: 168275 acaacacaatagactgaaga 168256
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>emb|AL845283.4| Mouse DNA sequence from clone RP23-151F21 on chromosome 2, complete
              sequence
          Length = 178403

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     attttcctttcaaataaatt 52
              ||||||||||||||||||||
Sbjct: 146333 attttcctttcaaataaatt 146352
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>emb|AL671900.5| Mouse DNA sequence from clone RP23-282O5 on chromosome X, complete
              sequence
          Length = 185389

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 365    taactgagcatgcgaaagat 384
              ||||||||||||||||||||
Sbjct: 110967 taactgagcatgcgaaagat 110948
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>emb|AL691513.13| Mouse DNA sequence from clone RP23-451C8 on chromosome X, complete
             sequence
          Length = 121936

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   ctcatcagaaaattcaattt 309
             ||||||||||||||||||||
Sbjct: 50972 ctcatcagaaaattcaattt 50953


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,615,397
Number of Sequences: 3902068
Number of extensions: 5615397
Number of successful extensions: 105939
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105604
Number of HSP's gapped (non-prelim): 335
length of query: 632
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 609
effective length of database: 17,143,297,704
effective search space: 10440268301736
effective search space used: 10440268301736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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