ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6j14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NORK_PEA (Q8LKZ1) Nodulation receptor kinase precursor (EC 2.7.1... 38 0.023
2NORK_MEDTR (Q8L4H4) Nodulation receptor kinase precursor (EC 2.7... 38 0.023
3CRI4_MAIZE (O24585) Putative receptor protein kinase CRINKLY4 pr... 35 0.15
4MTH1_DROME (Q9VXD9) Probable G-protein coupled receptor Mth-like... 32 2.2
5WASF3_HUMAN (Q9UPY6) Wiskott-Aldrich syndrome protein family mem... 31 3.7
6RGA2_SCHPO (Q10164) Probable Rho-type GTPase-activating protein 2 30 6.3
7V70K_EPMV (P20129) 70 kDa protein 30 8.2

>NORK_PEA (Q8LKZ1) Nodulation receptor kinase precursor (EC 2.7.11.1)|
          Length = 924

 Score = 38.1 bits (87), Expect = 0.023
 Identities = 20/58 (34%), Positives = 32/58 (55%)
 Frame = -2

Query: 653 LDQIVDPYLKGKIVPQCFKKFAETAEKCVADNGIERPSMGDVLWNLEFALQMQESAEE 480
           +D+IVDP +KG    +   +  E A +C+      RP M D++  LE AL ++ +A E
Sbjct: 822 VDEIVDPGIKGGYHAEALWRVVEVALQCLEPYSTYRPCMVDIVRELEDALIIENNASE 879



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>NORK_MEDTR (Q8L4H4) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does|
           not make infections protein 2) (Symbiosis receptor-like
           kinase) (MtSYMRK)
          Length = 925

 Score = 38.1 bits (87), Expect = 0.023
 Identities = 20/58 (34%), Positives = 32/58 (55%)
 Frame = -2

Query: 653 LDQIVDPYLKGKIVPQCFKKFAETAEKCVADNGIERPSMGDVLWNLEFALQMQESAEE 480
           +D+IVDP +KG    +   +  E A +C+      RP M D++  LE AL ++ +A E
Sbjct: 823 VDEIVDPGIKGGYHAEALWRVVEVALQCLEPYSTYRPCMVDIVRELEDALIIENNASE 880



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>CRI4_MAIZE (O24585) Putative receptor protein kinase CRINKLY4 precursor (EC|
           2.7.11.1)
          Length = 901

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 21/49 (42%), Positives = 25/49 (51%)
 Frame = -2

Query: 644 IVDPYLKGKIVPQCFKKFAETAEKCVADNGIERPSMGDVLWNLEFALQM 498
           I+DP L      +  KK A  A KCV   G +RPSM  V   LE AL +
Sbjct: 736 ILDPVLSPPSDLEALKKIASVACKCVRMRGKDRPSMDKVTTALEHALAL 784



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>MTH1_DROME (Q9VXD9) Probable G-protein coupled receptor Mth-like 1 precursor|
           (Protein methuselah-like 1)
          Length = 676

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 238 NKQTQIFTSPHRPLGFMICENTALGVSPSESMLATLW 348
           N+   IF   + P+G ++C N AL VS +  +   LW
Sbjct: 484 NRNLSIFAYFYGPIGLLLCANIALFVSTTHQLTCGLW 520



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>WASF3_HUMAN (Q9UPY6) Wiskott-Aldrich syndrome protein family member 3|
           (WASP-family protein member 3) (WAVE-3 protein)
           (Verprolin homology domain-containing protein 3)
          Length = 502

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
 Frame = +2

Query: 395 QLMGHWDPSFQPSRGECPHLTSHSQCFRSP------PRFPASEEQTPSSKAHLPSKG 547
           Q++ +++PS  P     P + S    F SP      P FPAS   T ++  H PS G
Sbjct: 333 QIIEYYNPSGPPPPPPPPVIPSAQTAFVSPLQMPMQPPFPASASSTHAAPPHPPSTG 389



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>RGA2_SCHPO (Q10164) Probable Rho-type GTPase-activating protein 2|
          Length = 1275

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +2

Query: 416 PSFQPSRGECPHLTSHSQCFRSPPRFP----ASEEQTPSSKAHLPS 541
           PS QPSR   P   S+S  +     FP     S +  P++ AH+ S
Sbjct: 126 PSSQPSRANSPQSDSYSSPYEKGKLFPKISLKSSKDVPTASAHISS 171



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>V70K_EPMV (P20129) 70 kDa protein|
          Length = 649

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 30/88 (34%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
 Frame = +2

Query: 239 TSRPRFLPHLTAPW--GS*SVRTPRLASAHPSRCSRHFGHPCLRKLLWSSWCLNQLMGHW 412
           T  P FLP+   P   G+    TPR  S  PS  S       LR  L S+     +    
Sbjct: 517 TVPPPFLPNHLHPLLPGTDPPTTPRQLSPSPSSLS-------LRTFLDSA----VISCDS 565

Query: 413 DPSFQPSRGECPHLTSHSQCFRSPPRFP 496
            P   PS     H +S  Q   SPPRFP
Sbjct: 566 SPVLPPSPSPSSHSSSSFQSCTSPPRFP 593


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,356,042
Number of Sequences: 219361
Number of extensions: 1889699
Number of successful extensions: 4332
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4325
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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