| Clone Name | rbags6j14 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 375 bits (189), Expect = e-100 Identities = 339/389 (87%) Strand = Plus / Minus Query: 266 ctcaccgccccttggggttcatgatctgtgagaacaccgcgcttggcgtcagcccatccg 325 ||||||| |||||||||||||||||||||||||| || ||||| || || ||||| || | Sbjct: 32458055 ctcaccgtcccttggggttcatgatctgtgagaagacagcgctaggagtaagcccgtcgg 32457996 Query: 326 agtcgatgctcgcgacactttggtcacccatgcttaaggaagttgttgtggtcgtcgtgg 385 |||| ||||| || ||||||||||| |||||||||| ||| || |||||||| || |||| Sbjct: 32457995 agtctatgctagcaacactttggtcgcccatgcttatggacgtggttgtggttgtagtgg 32457936 Query: 386 tgcttgaatcaattgatgggtcattgggatccttctttccaaccatcacgaggggagtgc 445 ||||||| || || ||||| ||||||||||||||||||||| |||||| |||||||||| Sbjct: 32457935 tgcttgactcgatcgatggatcattgggatccttctttccaggcatcacaaggggagtgc 32457876 Query: 446 cctcatctgacatcccacagccaatgcttccgctctcctccgcgctttcctgcatctgaa 505 ||||||||||||||||||| ||||||||||| || ||||| || ||||||||||| |||| Sbjct: 32457875 cctcatctgacatcccacaaccaatgcttccactatcctctgcactttcctgcatttgaa 32457816 Query: 506 gagcaaactccaagttccaaagcacatctcccatcgaagggcgctcaatgccattgtcgg 565 | ||||| ||||||||||| |||||||||||||| ||||| || || ||||| | || | Sbjct: 32457815 gggcaaattccaagttccacagcacatctcccattgaaggacgatcgatgccttcatctg 32457756 Query: 566 caacacacttctcagccgtctcggcaaacttcttgaagcactgcggaacaatctttcctt 625 |||||| |||||||| |||||||||||||||||||||||||| ||| | |||||||| | Sbjct: 32457755 aaacacatttctcagcagtctcggcaaacttcttgaagcactgtggagcgatctttccct 32457696 Query: 626 tgaggtagggatcaacaatctgatcaaga 654 | |||| |||||||||||||||||||||| Sbjct: 32457695 tcaggtggggatcaacaatctgatcaaga 32457667 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 118 aaatatctaatatgaaacaattctctgacttc 149 |||||||||||||| ||||| ||||||||||| Sbjct: 32458183 aaatatctaatatggaacaactctctgacttc 32458152
>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0665A11 Length = 166421 Score = 375 bits (189), Expect = e-100 Identities = 339/389 (87%) Strand = Plus / Minus Query: 266 ctcaccgccccttggggttcatgatctgtgagaacaccgcgcttggcgtcagcccatccg 325 ||||||| |||||||||||||||||||||||||| || ||||| || || ||||| || | Sbjct: 45576 ctcaccgtcccttggggttcatgatctgtgagaagacagcgctaggagtaagcccgtcgg 45517 Query: 326 agtcgatgctcgcgacactttggtcacccatgcttaaggaagttgttgtggtcgtcgtgg 385 |||| ||||| || ||||||||||| |||||||||| ||| || |||||||| || |||| Sbjct: 45516 agtctatgctagcaacactttggtcgcccatgcttatggacgtggttgtggttgtagtgg 45457 Query: 386 tgcttgaatcaattgatgggtcattgggatccttctttccaaccatcacgaggggagtgc 445 ||||||| || || ||||| ||||||||||||||||||||| |||||| |||||||||| Sbjct: 45456 tgcttgactcgatcgatggatcattgggatccttctttccaggcatcacaaggggagtgc 45397 Query: 446 cctcatctgacatcccacagccaatgcttccgctctcctccgcgctttcctgcatctgaa 505 ||||||||||||||||||| ||||||||||| || ||||| || ||||||||||| |||| Sbjct: 45396 cctcatctgacatcccacaaccaatgcttccactatcctctgcactttcctgcatttgaa 45337 Query: 506 gagcaaactccaagttccaaagcacatctcccatcgaagggcgctcaatgccattgtcgg 565 | ||||| ||||||||||| |||||||||||||| ||||| || || ||||| | || | Sbjct: 45336 gggcaaattccaagttccacagcacatctcccattgaaggacgatcgatgccttcatctg 45277 Query: 566 caacacacttctcagccgtctcggcaaacttcttgaagcactgcggaacaatctttcctt 625 |||||| |||||||| |||||||||||||||||||||||||| ||| | |||||||| | Sbjct: 45276 aaacacatttctcagcagtctcggcaaacttcttgaagcactgtggagcgatctttccct 45217 Query: 626 tgaggtagggatcaacaatctgatcaaga 654 | |||| |||||||||||||||||||||| Sbjct: 45216 tcaggtggggatcaacaatctgatcaaga 45188 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 118 aaatatctaatatgaaacaattctctgacttc 149 |||||||||||||| ||||| ||||||||||| Sbjct: 45704 aaatatctaatatggaacaactctctgacttc 45673
>dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1143G03 Length = 137770 Score = 375 bits (189), Expect = e-100 Identities = 339/389 (87%) Strand = Plus / Minus Query: 266 ctcaccgccccttggggttcatgatctgtgagaacaccgcgcttggcgtcagcccatccg 325 ||||||| |||||||||||||||||||||||||| || ||||| || || ||||| || | Sbjct: 137552 ctcaccgtcccttggggttcatgatctgtgagaagacagcgctaggagtaagcccgtcgg 137493 Query: 326 agtcgatgctcgcgacactttggtcacccatgcttaaggaagttgttgtggtcgtcgtgg 385 |||| ||||| || ||||||||||| |||||||||| ||| || |||||||| || |||| Sbjct: 137492 agtctatgctagcaacactttggtcgcccatgcttatggacgtggttgtggttgtagtgg 137433 Query: 386 tgcttgaatcaattgatgggtcattgggatccttctttccaaccatcacgaggggagtgc 445 ||||||| || || ||||| ||||||||||||||||||||| |||||| |||||||||| Sbjct: 137432 tgcttgactcgatcgatggatcattgggatccttctttccaggcatcacaaggggagtgc 137373 Query: 446 cctcatctgacatcccacagccaatgcttccgctctcctccgcgctttcctgcatctgaa 505 ||||||||||||||||||| ||||||||||| || ||||| || ||||||||||| |||| Sbjct: 137372 cctcatctgacatcccacaaccaatgcttccactatcctctgcactttcctgcatttgaa 137313 Query: 506 gagcaaactccaagttccaaagcacatctcccatcgaagggcgctcaatgccattgtcgg 565 | ||||| ||||||||||| |||||||||||||| ||||| || || ||||| | || | Sbjct: 137312 gggcaaattccaagttccacagcacatctcccattgaaggacgatcgatgccttcatctg 137253 Query: 566 caacacacttctcagccgtctcggcaaacttcttgaagcactgcggaacaatctttcctt 625 |||||| |||||||| |||||||||||||||||||||||||| ||| | |||||||| | Sbjct: 137252 aaacacatttctcagcagtctcggcaaacttcttgaagcactgtggagcgatctttccct 137193 Query: 626 tgaggtagggatcaacaatctgatcaaga 654 | |||| |||||||||||||||||||||| Sbjct: 137192 tcaggtggggatcaacaatctgatcaaga 137164 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 118 aaatatctaatatgaaacaattctctgacttc 149 |||||||||||||| ||||| ||||||||||| Sbjct: 137680 aaatatctaatatggaacaactctctgacttc 137649
>dbj|AK105465.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-126-A03, full insert sequence Length = 1761 Score = 375 bits (189), Expect = e-100 Identities = 339/389 (87%) Strand = Plus / Minus Query: 266 ctcaccgccccttggggttcatgatctgtgagaacaccgcgcttggcgtcagcccatccg 325 ||||||| |||||||||||||||||||||||||| || ||||| || || ||||| || | Sbjct: 1505 ctcaccgtcccttggggttcatgatctgtgagaagacagcgctaggagtaagcccgtcgg 1446 Query: 326 agtcgatgctcgcgacactttggtcacccatgcttaaggaagttgttgtggtcgtcgtgg 385 |||| ||||| || ||||||||||| |||||||||| ||| || |||||||| || |||| Sbjct: 1445 agtctatgctagcaacactttggtcgcccatgcttatggacgtggttgtggttgtagtgg 1386 Query: 386 tgcttgaatcaattgatgggtcattgggatccttctttccaaccatcacgaggggagtgc 445 ||||||| || || ||||| ||||||||||||||||||||| |||||| |||||||||| Sbjct: 1385 tgcttgactcgatcgatggatcattgggatccttctttccaggcatcacaaggggagtgc 1326 Query: 446 cctcatctgacatcccacagccaatgcttccgctctcctccgcgctttcctgcatctgaa 505 ||||||||||||||||||| ||||||||||| || ||||| || ||||||||||| |||| Sbjct: 1325 cctcatctgacatcccacaaccaatgcttccactatcctctgcactttcctgcatttgaa 1266 Query: 506 gagcaaactccaagttccaaagcacatctcccatcgaagggcgctcaatgccattgtcgg 565 | ||||| ||||||||||| |||||||||||||| ||||| || || ||||| | || | Sbjct: 1265 gggcaaattccaagttccacagcacatctcccattgaaggacgatcgatgccttcatctg 1206 Query: 566 caacacacttctcagccgtctcggcaaacttcttgaagcactgcggaacaatctttcctt 625 |||||| |||||||| |||||||||||||||||||||||||| ||| | |||||||| | Sbjct: 1205 aaacacatttctcagcagtctcggcaaacttcttgaagcactgtggagcgatctttccct 1146 Query: 626 tgaggtagggatcaacaatctgatcaaga 654 | |||| |||||||||||||||||||||| Sbjct: 1145 tcaggtggggatcaacaatctgatcaaga 1117 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 118 aaatatctaatatgaaacaattctctgacttc 149 |||||||||||||| ||||| ||||||||||| Sbjct: 1633 aaatatctaatatggaacaactctctgacttc 1602
>dbj|AK101775.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033064M23, full insert sequence Length = 3155 Score = 375 bits (189), Expect = e-100 Identities = 339/389 (87%) Strand = Plus / Minus Query: 266 ctcaccgccccttggggttcatgatctgtgagaacaccgcgcttggcgtcagcccatccg 325 ||||||| |||||||||||||||||||||||||| || ||||| || || ||||| || | Sbjct: 2922 ctcaccgtcccttggggttcatgatctgtgagaagacagcgctaggagtaagcccgtcgg 2863 Query: 326 agtcgatgctcgcgacactttggtcacccatgcttaaggaagttgttgtggtcgtcgtgg 385 |||| ||||| || ||||||||||| |||||||||| ||| || |||||||| || |||| Sbjct: 2862 agtctatgctagcaacactttggtcgcccatgcttatggacgtggttgtggttgtagtgg 2803 Query: 386 tgcttgaatcaattgatgggtcattgggatccttctttccaaccatcacgaggggagtgc 445 ||||||| || || ||||| ||||||||||||||||||||| |||||| |||||||||| Sbjct: 2802 tgcttgactcgatcgatggatcattgggatccttctttccaggcatcacaaggggagtgc 2743 Query: 446 cctcatctgacatcccacagccaatgcttccgctctcctccgcgctttcctgcatctgaa 505 ||||||||||||||||||| ||||||||||| || ||||| || ||||||||||| |||| Sbjct: 2742 cctcatctgacatcccacaaccaatgcttccactatcctctgcactttcctgcatttgaa 2683 Query: 506 gagcaaactccaagttccaaagcacatctcccatcgaagggcgctcaatgccattgtcgg 565 | ||||| ||||||||||| |||||||||||||| ||||| || || ||||| | || | Sbjct: 2682 gggcaaattccaagttccacagcacatctcccattgaaggacgatcgatgccttcatctg 2623 Query: 566 caacacacttctcagccgtctcggcaaacttcttgaagcactgcggaacaatctttcctt 625 |||||| |||||||| |||||||||||||||||||||||||| ||| | |||||||| | Sbjct: 2622 aaacacatttctcagcagtctcggcaaacttcttgaagcactgtggagcgatctttccct 2563 Query: 626 tgaggtagggatcaacaatctgatcaaga 654 | |||| |||||||||||||||||||||| Sbjct: 2562 tcaggtggggatcaacaatctgatcaaga 2534 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 118 aaatatctaatatgaaacaattctctgacttc 149 |||||||||||||| ||||| ||||||||||| Sbjct: 3050 aaatatctaatatggaacaactctctgacttc 3019
>ref|NM_191406.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2691 Score = 373 bits (188), Expect = e-100 Identities = 338/388 (87%) Strand = Plus / Minus Query: 267 tcaccgccccttggggttcatgatctgtgagaacaccgcgcttggcgtcagcccatccga 326 |||||| |||||||||||||||||||||||||| || ||||| || || ||||| || || Sbjct: 2691 tcaccgtcccttggggttcatgatctgtgagaagacagcgctaggagtaagcccgtcgga 2632 Query: 327 gtcgatgctcgcgacactttggtcacccatgcttaaggaagttgttgtggtcgtcgtggt 386 ||| ||||| || ||||||||||| |||||||||| ||| || |||||||| || ||||| Sbjct: 2631 gtctatgctagcaacactttggtcgcccatgcttatggacgtggttgtggttgtagtggt 2572 Query: 387 gcttgaatcaattgatgggtcattgggatccttctttccaaccatcacgaggggagtgcc 446 |||||| || || ||||| ||||||||||||||||||||| |||||| ||||||||||| Sbjct: 2571 gcttgactcgatcgatggatcattgggatccttctttccaggcatcacaaggggagtgcc 2512 Query: 447 ctcatctgacatcccacagccaatgcttccgctctcctccgcgctttcctgcatctgaag 506 |||||||||||||||||| ||||||||||| || ||||| || ||||||||||| ||||| Sbjct: 2511 ctcatctgacatcccacaaccaatgcttccactatcctctgcactttcctgcatttgaag 2452 Query: 507 agcaaactccaagttccaaagcacatctcccatcgaagggcgctcaatgccattgtcggc 566 ||||| ||||||||||| |||||||||||||| ||||| || || ||||| | || | Sbjct: 2451 ggcaaattccaagttccacagcacatctcccattgaaggacgatcgatgccttcatctga 2392 Query: 567 aacacacttctcagccgtctcggcaaacttcttgaagcactgcggaacaatctttccttt 626 |||||| |||||||| |||||||||||||||||||||||||| ||| | |||||||| || Sbjct: 2391 aacacatttctcagcagtctcggcaaacttcttgaagcactgtggagcgatctttccctt 2332 Query: 627 gaggtagggatcaacaatctgatcaaga 654 |||| |||||||||||||||||||||| Sbjct: 2331 caggtggggatcaacaatctgatcaaga 2304
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 363 bits (183), Expect = 5e-97 Identities = 339/391 (86%) Strand = Plus / Minus Query: 264 acctcaccgccccttggggttcatgatctgtgagaacaccgcgcttggcgtcagcccatc 323 ||||||||| |||||||||||||||||||| ||||| || || || |||||||||||||| Sbjct: 12284688 acctcaccgtcccttggggttcatgatctgcgagaagacagcactaggcgtcagcccatc 12284629 Query: 324 cgagtcgatgctcgcgacactttggtcacccatgcttaaggaagttgttgtggtcgtcgt 383 |||||| || || || ||||| || ||||||||||||| || || ||||| || ||||| Sbjct: 12284628 cgagtcaatacttgcaacactctgctcacccatgcttatcgaggtagttgtcgttgtcgt 12284569 Query: 384 ggtgcttgaatcaattgatgggtcattgggatccttctttccaaccatcacgaggggagt 443 ||||||||| || || ||||| ||||||||||||||||||||||| ||||| |||||||| Sbjct: 12284568 ggtgcttgactcgatagatggatcattgggatccttctttccaactatcacaaggggagt 12284509 Query: 444 gccctcatctgacatcccacagccaatgcttccgctctcctccgcgctttcctgcatctg 503 || || |||||||||||||| |||| ||||||||||||||| || ||||||||||| || Sbjct: 12284508 gctgtcgtctgacatcccacatccaaggcttccgctctcctctgcactttcctgcatttg 12284449 Query: 504 aagagcaaactccaagttccaaagcacatctcccatcgaagggcgctcaatgccattgtc 563 ||| ||||| ||||||||||| |||||||||||||||||||| || |||||||| | || Sbjct: 12284448 aagggcaaattccaagttccacagcacatctcccatcgaaggacggtcaatgccctgatc 12284389 Query: 564 ggcaacacacttctcagccgtctcggcaaacttcttgaagcactgcggaacaatctttcc 623 | ||||||||||||||| || || |||||||||||||| || || ||| |||||||||| Sbjct: 12284388 agaaacacacttctcagctgtttctgcaaacttcttgaaacattgtggagcaatctttcc 12284329 Query: 624 tttgaggtagggatcaacaatctgatcaaga 654 || |||| |||||||||||||||||||||| Sbjct: 12284328 cttcaggtggggatcaacaatctgatcaaga 12284298 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 180 caaactcatgaaaatatgctgaatgaata 208 |||||||||||| |||||||||||||||| Sbjct: 12284753 caaactcatgaacatatgctgaatgaata 12284725
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 363 bits (183), Expect = 5e-97 Identities = 339/391 (86%) Strand = Plus / Minus Query: 264 acctcaccgccccttggggttcatgatctgtgagaacaccgcgcttggcgtcagcccatc 323 ||||||||| |||||||||||||||||||| ||||| || || || |||||||||||||| Sbjct: 12281451 acctcaccgtcccttggggttcatgatctgcgagaagacagcactaggcgtcagcccatc 12281392 Query: 324 cgagtcgatgctcgcgacactttggtcacccatgcttaaggaagttgttgtggtcgtcgt 383 |||||| || || || ||||| || ||||||||||||| || || ||||| || ||||| Sbjct: 12281391 cgagtcaatacttgcaacactctgctcacccatgcttatcgaggtagttgtcgttgtcgt 12281332 Query: 384 ggtgcttgaatcaattgatgggtcattgggatccttctttccaaccatcacgaggggagt 443 ||||||||| || || ||||| ||||||||||||||||||||||| ||||| |||||||| Sbjct: 12281331 ggtgcttgactcgatagatggatcattgggatccttctttccaactatcacaaggggagt 12281272 Query: 444 gccctcatctgacatcccacagccaatgcttccgctctcctccgcgctttcctgcatctg 503 || || |||||||||||||| |||| ||||||||||||||| || ||||||||||| || Sbjct: 12281271 gctgtcgtctgacatcccacatccaaggcttccgctctcctctgcactttcctgcatttg 12281212 Query: 504 aagagcaaactccaagttccaaagcacatctcccatcgaagggcgctcaatgccattgtc 563 ||| ||||| ||||||||||| |||||||||||||||||||| || |||||||| | || Sbjct: 12281211 aagggcaaattccaagttccacagcacatctcccatcgaaggacggtcaatgccctgatc 12281152 Query: 564 ggcaacacacttctcagccgtctcggcaaacttcttgaagcactgcggaacaatctttcc 623 | ||||||||||||||| || || |||||||||||||| || || ||| |||||||||| Sbjct: 12281151 agaaacacacttctcagctgtttctgcaaacttcttgaaacattgtggagcaatctttcc 12281092 Query: 624 tttgaggtagggatcaacaatctgatcaaga 654 || |||| |||||||||||||||||||||| Sbjct: 12281091 cttcaggtggggatcaacaatctgatcaaga 12281061 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 180 caaactcatgaaaatatgctgaatgaata 208 |||||||||||| |||||||||||||||| Sbjct: 12281516 caaactcatgaacatatgctgaatgaata 12281488
>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0029K10, from chromosome 3, complete sequence Length = 135940 Score = 363 bits (183), Expect = 5e-97 Identities = 339/391 (86%) Strand = Plus / Minus Query: 264 acctcaccgccccttggggttcatgatctgtgagaacaccgcgcttggcgtcagcccatc 323 ||||||||| |||||||||||||||||||| ||||| || || || |||||||||||||| Sbjct: 54221 acctcaccgtcccttggggttcatgatctgcgagaagacagcactaggcgtcagcccatc 54162 Query: 324 cgagtcgatgctcgcgacactttggtcacccatgcttaaggaagttgttgtggtcgtcgt 383 |||||| || || || ||||| || ||||||||||||| || || ||||| || ||||| Sbjct: 54161 cgagtcaatacttgcaacactctgctcacccatgcttatcgaggtagttgtcgttgtcgt 54102 Query: 384 ggtgcttgaatcaattgatgggtcattgggatccttctttccaaccatcacgaggggagt 443 ||||||||| || || ||||| ||||||||||||||||||||||| ||||| |||||||| Sbjct: 54101 ggtgcttgactcgatagatggatcattgggatccttctttccaactatcacaaggggagt 54042 Query: 444 gccctcatctgacatcccacagccaatgcttccgctctcctccgcgctttcctgcatctg 503 || || |||||||||||||| |||| ||||||||||||||| || ||||||||||| || Sbjct: 54041 gctgtcgtctgacatcccacatccaaggcttccgctctcctctgcactttcctgcatttg 53982 Query: 504 aagagcaaactccaagttccaaagcacatctcccatcgaagggcgctcaatgccattgtc 563 ||| ||||| ||||||||||| |||||||||||||||||||| || |||||||| | || Sbjct: 53981 aagggcaaattccaagttccacagcacatctcccatcgaaggacggtcaatgccctgatc 53922 Query: 564 ggcaacacacttctcagccgtctcggcaaacttcttgaagcactgcggaacaatctttcc 623 | ||||||||||||||| || || |||||||||||||| || || ||| |||||||||| Sbjct: 53921 agaaacacacttctcagctgtttctgcaaacttcttgaaacattgtggagcaatctttcc 53862 Query: 624 tttgaggtagggatcaacaatctgatcaaga 654 || |||| |||||||||||||||||||||| Sbjct: 53861 cttcaggtggggatcaacaatctgatcaaga 53831 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 180 caaactcatgaaaatatgctgaatgaata 208 |||||||||||| |||||||||||||||| Sbjct: 54286 caaactcatgaacatatgctgaatgaata 54258
>dbj|AK099791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097C16, full insert sequence Length = 3171 Score = 355 bits (179), Expect = 1e-94 Identities = 338/391 (86%) Strand = Plus / Minus Query: 264 acctcaccgccccttggggttcatgatctgtgagaacaccgcgcttggcgtcagcccatc 323 ||||||||| |||||||||||||||||||| ||||| || || || |||||||||||||| Sbjct: 2927 acctcaccgtcccttggggttcatgatctgcgagaagacagcactaggcgtcagcccatc 2868 Query: 324 cgagtcgatgctcgcgacactttggtcacccatgcttaaggaagttgttgtggtcgtcgt 383 |||||| || || || ||||| || ||||||||||||| || || ||||| || ||||| Sbjct: 2867 cgagtcaatacttgcaacactctgctcacccatgcttatcgaggtagttgtcgttgtcgt 2808 Query: 384 ggtgcttgaatcaattgatgggtcattgggatccttctttccaaccatcacgaggggagt 443 ||||||||| || || ||||| ||||||||||||||||||||||| ||||| |||||||| Sbjct: 2807 ggtgcttgactcgatagatggatcattgggatccttctttccaactatcacaaggggagt 2748 Query: 444 gccctcatctgacatcccacagccaatgcttccgctctcctccgcgctttcctgcatctg 503 || || |||||||||||||| |||| ||||||||||||||| || ||||||||||| || Sbjct: 2747 gctgtcgtctgacatcccacatccaaggcttccgctctcctctgcactttcctgcatttg 2688 Query: 504 aagagcaaactccaagttccaaagcacatctcccatcgaagggcgctcaatgccattgtc 563 ||| | ||| ||||||||||| |||||||||||||||||||| || |||||||| | || Sbjct: 2687 aagggtaaattccaagttccacagcacatctcccatcgaaggacggtcaatgccctgatc 2628 Query: 564 ggcaacacacttctcagccgtctcggcaaacttcttgaagcactgcggaacaatctttcc 623 | ||||||||||||||| || || |||||||||||||| || || ||| |||||||||| Sbjct: 2627 agaaacacacttctcagctgtttctgcaaacttcttgaaacattgtggagcaatctttcc 2568 Query: 624 tttgaggtagggatcaacaatctgatcaaga 654 || |||| |||||||||||||||||||||| Sbjct: 2567 cttcaggtggggatcaacaatctgatcaaga 2537 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 180 caaactcatgaaaatatgctgaatgaata 208 |||||||||||| |||||||||||||||| Sbjct: 2992 caaactcatgaacatatgctgaatgaata 2964
>gb|AY107387.1| Zea mays PCO149313 mRNA sequence Length = 1336 Score = 291 bits (147), Expect = 1e-75 Identities = 331/390 (84%), Gaps = 3/390 (0%) Strand = Plus / Minus Query: 264 acctcaccgccccttggggttcatgatctgtgagaacaccgcgcttggcgtcagcccatc 323 |||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||||| Sbjct: 1083 acctcaccgccccttggggttcatgatctgcgagaagacggcgctaggcgtcagcccatc 1024 Query: 324 cgagtcgatgctcgcgacactttggtcacccatgcttaaggaagttgttgtggtcgtcgt 383 |||||| || |||||||| |||||||| |||||||||| ||||| || || || || || Sbjct: 1023 cgagtctatactcgcgacgctttggtcgcccatgcttatagaagtggtggttgtggtggt 964 Query: 384 ggtgcttgaatcaattgatgggtcattgggatccttctttccaaccatcacgaggggagt 443 ||||||||| || || |||||||| || || |||||||| || ||||||| | ||| | Sbjct: 963 ggtgcttgactcgatcgatgggtcgttcgggtccttcttcccgaccatca--atggg-gc 907 Query: 444 gccctcatctgacatcccacagccaatgcttccgctctcctccgcgctttcctgcatctg 503 |||||| ||||||||||| ||||||| |||||||||||| || |||| |||||||||||| Sbjct: 906 gccctcgtctgacatcccgcagccaaggcttccgctctcttctgcgccttcctgcatctg 847 Query: 504 aagagcaaactccaagttccaaagcacatctcccatcgaagggcgctcaatgccattgtc 563 ||| || ||||||| |||||| |||||||| |||||||||||||| || || || | || Sbjct: 846 aagggcgaactccaggttccagagcacatcacccatcgaagggcggtcgattccctgatc 787 Query: 564 ggcaacacacttctcagccgtctcggcaaacttcttgaagcactgcggaacaatctttcc 623 | |||||||||||| || |||||||| ||||||||||||||||| || | |||||||| Sbjct: 786 agaaacacacttctcggctgtctcggcgaacttcttgaagcactgtggggctatctttcc 727 Query: 624 tttgaggtagggatcaacaatctgatcaag 653 || |||||||| || |||||||| ||||| Sbjct: 726 cttcaggtaggggtcgacaatctggtcaag 697
>ref|NM_120071.1| Arabidopsis thaliana kinase AT4G39110 mRNA, complete cds Length = 2637 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 501 ctgaagagcaaactccaagttccaaagcacatctcccat 539 |||||||||| ||||||||||||| || ||||||||||| Sbjct: 2400 ctgaagagcatactccaagttccacagaacatctcccat 2362
>emb|AL161594.2|ATCHRIV90 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 90 Length = 198987 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 501 ctgaagagcaaactccaagttccaaagcacatctcccat 539 |||||||||| ||||||||||||| || ||||||||||| Sbjct: 136876 ctgaagagcatactccaagttccacagaacatctcccat 136914
>emb|AL050351.1|ATT22F8 Arabidopsis thaliana DNA chromosome 4, BAC clone T22F8 (ESSA project) Length = 89035 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 501 ctgaagagcaaactccaagttccaaagcacatctcccat 539 |||||||||| ||||||||||||| || ||||||||||| Sbjct: 5412 ctgaagagcatactccaagttccacagaacatctcccat 5450
>emb|AL035679.1|ATF19H22 Arabidopsis thaliana DNA chromosome 4, BAC clone F19H22 (ESSA project) Length = 100469 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 501 ctgaagagcaaactccaagttccaaagcacatctcccat 539 |||||||||| ||||||||||||| || ||||||||||| Sbjct: 98865 ctgaagagcatactccaagttccacagaacatctcccat 98903
>ref|XM_476281.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2610 Score = 46.1 bits (23), Expect = 0.14 Identities = 86/107 (80%) Strand = Plus / Minus Query: 493 tcctgcatctgaagagcaaactccaagttccaaagcacatctcccatcgaagggcgctca 552 ||||||||||| | || ||||| | ||||||||| || || ||||| || ||||| || Sbjct: 2426 tcctgcatctgcaacgcgaactcaaggttccaaaggacgtcgcccatggacgggcggtcc 2367 Query: 553 atgccattgtcggcaacacacttctcagccgtctcggcaaacttctt 599 | ||||| |||||| | |||||||| ||||| ||||| |||||||| Sbjct: 2366 acgccatggtcggccaggcacttctctgccgtttcggcgaacttctt 2320
>gb|AC130609.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0048F12, complete sequence Length = 139627 Score = 46.1 bits (23), Expect = 0.14 Identities = 86/107 (80%) Strand = Plus / Plus Query: 493 tcctgcatctgaagagcaaactccaagttccaaagcacatctcccatcgaagggcgctca 552 ||||||||||| | || ||||| | ||||||||| || || ||||| || ||||| || Sbjct: 133352 tcctgcatctgcaacgcgaactcaaggttccaaaggacgtcgcccatggacgggcggtcc 133411 Query: 553 atgccattgtcggcaacacacttctcagccgtctcggcaaacttctt 599 | ||||| |||||| | |||||||| ||||| ||||| |||||||| Sbjct: 133412 acgccatggtcggccaggcacttctctgccgtttcggcgaacttctt 133458
>gb|AC135923.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0479C09, complete sequence Length = 156776 Score = 46.1 bits (23), Expect = 0.14 Identities = 86/107 (80%) Strand = Plus / Plus Query: 493 tcctgcatctgaagagcaaactccaagttccaaagcacatctcccatcgaagggcgctca 552 ||||||||||| | || ||||| | ||||||||| || || ||||| || ||||| || Sbjct: 14557 tcctgcatctgcaacgcgaactcaaggttccaaaggacgtcgcccatggacgggcggtcc 14616 Query: 553 atgccattgtcggcaacacacttctcagccgtctcggcaaacttctt 599 | ||||| |||||| | |||||||| ||||| ||||| |||||||| Sbjct: 14617 acgccatggtcggccaggcacttctctgccgtttcggcgaacttctt 14663
>gb|DQ356247.1| Cooperia oncophora clone Co4 depsiphilin mRNA, complete cds Length = 3565 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 364 gaagttgttgtggtcgtcgtggt 386 ||||||||||||||||||||||| Sbjct: 548 gaagttgttgtggtcgtcgtggt 526
>gb|DQ356246.1| Cooperia oncophora clone Co2 depsiphilin mRNA, complete cds Length = 3038 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 364 gaagttgttgtggtcgtcgtggt 386 ||||||||||||||||||||||| Sbjct: 437 gaagttgttgtggtcgtcgtggt 415
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.14 Identities = 86/107 (80%) Strand = Plus / Plus Query: 493 tcctgcatctgaagagcaaactccaagttccaaagcacatctcccatcgaagggcgctca 552 ||||||||||| | || ||||| | ||||||||| || || ||||| || ||||| || Sbjct: 11688917 tcctgcatctgcaacgcgaactcaaggttccaaaggacgtcgcccatggacgggcggtcc 11688976 Query: 553 atgccattgtcggcaacacacttctcagccgtctcggcaaacttctt 599 | ||||| |||||| | |||||||| ||||| ||||| |||||||| Sbjct: 11688977 acgccatggtcggccaggcacttctctgccgtttcggcgaacttctt 11689023 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 509 caaactccaagttccaaagcacatctcccatcg 541 ||||||||| |||||| || ||||||||||||| Sbjct: 3612939 caaactccaggttccacaggacatctcccatcg 3612907
>dbj|AK121335.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023119L07, full insert sequence Length = 3171 Score = 46.1 bits (23), Expect = 0.14 Identities = 86/107 (80%) Strand = Plus / Minus Query: 493 tcctgcatctgaagagcaaactccaagttccaaagcacatctcccatcgaagggcgctca 552 ||||||||||| | || ||||| | ||||||||| || || ||||| || ||||| || Sbjct: 2588 tcctgcatctgcaacgcgaactcaaggttccaaaggacgtcgcccatggacgggcggtcc 2529 Query: 553 atgccattgtcggcaacacacttctcagccgtctcggcaaacttctt 599 | ||||| |||||| | |||||||| ||||| ||||| |||||||| Sbjct: 2528 acgccatggtcggccaggcacttctctgccgtttcggcgaacttctt 2482
>dbj|AK100616.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108B08, full insert sequence Length = 2441 Score = 46.1 bits (23), Expect = 0.14 Identities = 86/107 (80%) Strand = Plus / Minus Query: 493 tcctgcatctgaagagcaaactccaagttccaaagcacatctcccatcgaagggcgctca 552 ||||||||||| | || ||||| | ||||||||| || || ||||| || ||||| || Sbjct: 2062 tcctgcatctgcaacgcgaactcaaggttccaaaggacgtcgcccatggacgggcggtcc 2003 Query: 553 atgccattgtcggcaacacacttctcagccgtctcggcaaacttctt 599 | ||||| |||||| | |||||||| ||||| ||||| |||||||| Sbjct: 2002 acgccatggtcggccaggcacttctctgccgtttcggcgaacttctt 1956
>gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome Length = 1799146 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 99 aagaaacaaggcaagacagaaatatctaatatgaa 133 ||||||||||||||| ||||||||| |||| |||| Sbjct: 1403012 aagaaacaaggcaaggcagaaatatataatgtgaa 1402978
>ref|NM_115014.2| Arabidopsis thaliana kinase AT3G51550 mRNA, complete cds Length = 3103 Score = 44.1 bits (22), Expect = 0.57 Identities = 139/178 (78%) Strand = Plus / Minus Query: 473 ttccgctctcctccgcgctttcctgcatctgaagagcaaactccaagttccaaagcacat 532 ||||| |||| || ||||||||||| | ||| | ||||| || |||||||| || |||| Sbjct: 2586 ttccgttctcttctgcgctttcctggagctgcaacgcaaattctaagttccacagaacat 2527 Query: 533 ctcccatcgaagggcgctcaatgccattgtcggcaacacacttctcagccgtctcggcaa 592 ||||||| || || | ||||||||| | ||| |||||||||| || || || |||| Sbjct: 2526 ctcccattgatggtctctcaatgccctggtctagaacacacttcatcgcggtttcagcaa 2467 Query: 593 acttcttgaagcactgcggaacaatctttcctttgaggtagggatcaacaatctgatc 650 |||| |||||||| | || ||||| || ||||||||||||||||| || ||||| Sbjct: 2466 actttttgaagcattctggtgtgatcttgcccttgaggtagggatcaacgatttgatc 2409
>gb|AC004613.1| Homo sapiens PAC clone RP4-651K2 from 7, complete sequence Length = 121166 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 405 gtcattgggatccttctttcca 426 |||||||||||||||||||||| Sbjct: 59328 gtcattgggatccttctttcca 59349
>gb|AY035053.1| Arabidopsis thaliana putative receptor-protein kinase (At3g51550) mRNA, complete cds Length = 3083 Score = 44.1 bits (22), Expect = 0.57 Identities = 139/178 (78%) Strand = Plus / Minus Query: 473 ttccgctctcctccgcgctttcctgcatctgaagagcaaactccaagttccaaagcacat 532 ||||| |||| || ||||||||||| | ||| | ||||| || |||||||| || |||| Sbjct: 2569 ttccgttctcttctgcgctttcctggagctgcaacgcaaattctaagttccacagaacat 2510 Query: 533 ctcccatcgaagggcgctcaatgccattgtcggcaacacacttctcagccgtctcggcaa 592 ||||||| || || | ||||||||| | ||| |||||||||| || || || |||| Sbjct: 2509 ctcccattgatggtctctcaatgccctggtctagaacacacttcatcgcggtttcagcaa 2450 Query: 593 acttcttgaagcactgcggaacaatctttcctttgaggtagggatcaacaatctgatc 650 |||| |||||||| | || ||||| || ||||||||||||||||| || ||||| Sbjct: 2449 actttttgaagcattctggtgtgatcttgcccttgaggtagggatcaacgatttgatc 2392
>emb|AL133452.1|ATF26O13 Arabidopsis thaliana DNA chromosome 3, BAC clone F26O13 Length = 94349 Score = 44.1 bits (22), Expect = 0.57 Identities = 139/178 (78%) Strand = Plus / Plus Query: 473 ttccgctctcctccgcgctttcctgcatctgaagagcaaactccaagttccaaagcacat 532 ||||| |||| || ||||||||||| | ||| | ||||| || |||||||| || |||| Sbjct: 63822 ttccgttctcttctgcgctttcctggagctgcaacgcaaattctaagttccacagaacat 63881 Query: 533 ctcccatcgaagggcgctcaatgccattgtcggcaacacacttctcagccgtctcggcaa 592 ||||||| || || | ||||||||| | ||| |||||||||| || || || |||| Sbjct: 63882 ctcccattgatggtctctcaatgccctggtctagaacacacttcatcgcggtttcagcaa 63941 Query: 593 acttcttgaagcactgcggaacaatctttcctttgaggtagggatcaacaatctgatc 650 |||| |||||||| | || ||||| || ||||||||||||||||| || ||||| Sbjct: 63942 actttttgaagcattctggtgtgatcttgcccttgaggtagggatcaacgatttgatc 63999
>gb|AY064216.1| Capsicum annuum receptor protein kinase-like protein mRNA, complete cds Length = 2312 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 505 agagcaaactccaagttccaaagcacatctcccatcga 542 |||||||| || | |||||| ||||||||||||||||| Sbjct: 1784 agagcaaattcaaggttccacagcacatctcccatcga 1747
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 481 tcctccgcgctttcctgcatct 502 |||||||||||||||||||||| Sbjct: 298970 tcctccgcgctttcctgcatct 298949 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 agcagacccagatttttacc 261 |||||||||||||||||||| Sbjct: 165101 agcagacccagatttttacc 165120
>gb|AC148919.1| Gallus gallus BAC clone CH261-43B19 from chromosome unknown, complete sequence Length = 163278 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 130 tgaaacaattctctgacttcta 151 |||||||||||||||||||||| Sbjct: 52897 tgaaacaattctctgacttcta 52876
>ref|XM_475640.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2529 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 509 caaactccaagttccaaagcacatctcccatcg 541 ||||||||| |||||| || ||||||||||||| Sbjct: 2332 caaactccaggttccacaggacatctcccatcg 2300
>gb|AC149542.1| Populus trichocarpa clone Pop1-2C5, complete sequence Length = 146274 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 520 ttccaaagcacatctcccatcgaagggcg 548 ||||| |||||||| |||||||||||||| Sbjct: 112988 ttccacagcacatcacccatcgaagggcg 113016
>gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099P06, complete sequence Length = 135117 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 509 caaactccaagttccaaagcacatctcccatcg 541 ||||||||| |||||| || ||||||||||||| Sbjct: 35286 caaactccaggttccacaggacatctcccatcg 35254
>gb|AC142329.1| Pan troglodytes BAC clone RP43-25D8 from 11, complete sequence Length = 188643 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 agcacaaactcatgaaaatat 196 ||||||||||||||||||||| Sbjct: 60366 agcacaaactcatgaaaatat 60346
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 628 aggtagggatcaacaatctga 648 ||||||||||||||||||||| Sbjct: 3571367 aggtagggatcaacaatctga 3571347 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 628 aggtagggatcaacaatctg 647 |||||||||||||||||||| Sbjct: 3415880 aggtagggatcaacaatctg 3415861
>dbj|D10511.2| Homo sapiens MAT gene for mitochondrial acetoacetyl-CoA thiolase, complete cds Length = 4392 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 agcacaaactcatgaaaatat 196 ||||||||||||||||||||| Sbjct: 627 agcacaaactcatgaaaatat 607
>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0577B11 Length = 180355 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 628 aggtagggatcaacaatctga 648 ||||||||||||||||||||| Sbjct: 49873 aggtagggatcaacaatctga 49853
>dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0672D01 Length = 146954 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 628 aggtagggatcaacaatctga 648 ||||||||||||||||||||| Sbjct: 127084 aggtagggatcaacaatctga 127064
>dbj|AK067124.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098L04, full insert sequence Length = 1216 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 509 caaactccaagttccaaagcacatctcccatcg 541 ||||||||| |||||| || ||||||||||||| Sbjct: 800 caaactccaggttccacaggacatctcccatcg 768
>emb|CR753890.27| Zebrafish DNA sequence from clone CH211-207D8 in linkage group 9, complete sequence Length = 201771 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 ggtacaacaacacatgcaaat 51 ||||||||||||||||||||| Sbjct: 1138 ggtacaacaacacatgcaaat 1118
>dbj|AP002433.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-144G7, complete sequence Length = 165164 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 agcacaaactcatgaaaatat 196 ||||||||||||||||||||| Sbjct: 105823 agcacaaactcatgaaaatat 105803
>gb|AC139064.13| Mus musculus chromosome 1, clone RP23-76C20, complete sequence Length = 242463 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 gaaacaaggcaagacagaaa 120 |||||||||||||||||||| Sbjct: 171244 gaaacaaggcaagacagaaa 171263
>gb|AC122117.10| Mus musculus chromosome 18, clone RP23-61O22, complete sequence Length = 207024 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 594 cttcttgaagcactgcggaacaat 617 |||||||||||||||| ||||||| Sbjct: 30729 cttcttgaagcactgctgaacaat 30706
>emb|BX914197.15| Zebrafish DNA sequence from clone DKEYP-81F11 in linkage group 11, complete sequence Length = 198600 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 atgaaaatatgctgaatgaa 206 |||||||||||||||||||| Sbjct: 104691 atgaaaatatgctgaatgaa 104710
>emb|CR788310.10| Zebrafish DNA sequence from clone DKEY-74F15 in linkage group 2, complete sequence Length = 244700 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 aacacatgcaaataagcata 58 |||||||||||||||||||| Sbjct: 325 aacacatgcaaataagcata 306
>ref|XM_810566.1| Trypanosoma cruzi strain CL Brener mucin TcMUCII (Tc00.1047053506939.40) partial mRNA Length = 564 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 gttgttgtggtcgtcgtggt 386 |||||||||||||||||||| Sbjct: 416 gttgttgtggtcgtcgtggt 397
>ref|XM_816612.1| Trypanosoma cruzi strain CL Brener mucin TcMUCII (Tc00.1047053508873.150) partial mRNA Length = 564 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 gttgttgtggtcgtcgtggt 386 |||||||||||||||||||| Sbjct: 416 gttgttgtggtcgtcgtggt 397
>ref|XM_812621.1| Trypanosoma cruzi strain CL Brener mucin TcMUCI (Tc00.1047053511149.130) partial mRNA Length = 387 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 gttgttgtggtcgtcgtggt 386 |||||||||||||||||||| Sbjct: 227 gttgttgtggtcgtcgtggt 208
>ref|XM_810828.1| Trypanosoma cruzi strain CL Brener mucin TcMUCII (Tc00.1047053511099.230) partial mRNA Length = 337 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 gttgttgtggtcgtcgtggt 386 |||||||||||||||||||| Sbjct: 177 gttgttgtggtcgtcgtggt 158
>gb|AC107231.9| Mus musculus chromosome 14, clone RP23-475A2, complete sequence Length = 216217 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 613 acaatctttcctttgaggta 632 |||||||||||||||||||| Sbjct: 182870 acaatctttcctttgaggta 182851
>gb|AC145866.3| Pan troglodytes BAC clone RP43-21B7 from 7, complete sequence Length = 189814 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 166 agacagcaagagcacaaactcatg 189 ||||||||||||||||| |||||| Sbjct: 91746 agacagcaagagcacaagctcatg 91723
>emb|CR786580.6| Human DNA sequence from clone RP11-764K9 on chromosome 9 Contains two novel pseudogenes, a novel gene, a pseudogene similar to part of double homeobox, 4 (DUX4), a FSHD region gene 1 (FRG1) pseudogene and four CpG islands, complete sequence Length = 191980 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 ctttggtcacccatgcttaa 362 |||||||||||||||||||| Sbjct: 173493 ctttggtcacccatgcttaa 173512
>emb|AL773545.13| Human DNA sequence from clone RP11-216M21 on chromosome 9 Contains three novel pseudogenes, a pseudogene similar to part of meprin A, alpha (PABA peptide hydrolase) (MEP1A), a pseudogene similar to part of G protein-coupled receptor 116 (GPR116), two novel genes, the 5' end of a novel gene similar to ankyrin repeat domain 20A (ANKRD20A) and three CpG islands, complete sequence Length = 165886 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 ctttggtcacccatgcttaa 362 |||||||||||||||||||| Sbjct: 83941 ctttggtcacccatgcttaa 83922
>emb|AL772155.6| Human DNA sequence from clone RP11-149F8 on chromosome 9 Contains a novel gene, two novel pseudogenes, a pseudogene similar to part of myosin V family protein, a tumor suppressor deleted in oral cancer-related 1 (DOC-1R) pseudogene, a pseudogene similar to part of prostaglandin E receptor 4 (subtype EP4) (PTGER4) and a CpG island, complete sequence Length = 163569 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 ctttggtcacccatgcttaa 362 |||||||||||||||||||| Sbjct: 31823 ctttggtcacccatgcttaa 31842
>emb|AL591479.3| Human DNA sequence from clone RP11-154P18 on chromosome 9 Contains two novel pseudogene, a CDRT15 protein pseudogene, a pseudogene similar to part of meprin A, alpha (PABA peptide hydrolase) (MEP1A) and two CpG islands, complete sequence Length = 178933 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 ctttggtcacccatgcttaa 362 |||||||||||||||||||| Sbjct: 136879 ctttggtcacccatgcttaa 136860
>emb|AL513478.10| Human DNA sequence from clone RP11-327I22 on chromosome 9 Contains a pseudogene similar to part of sorting nexin associated golgi protein 1 (SNAG1), the ANKRD20A gene for ankyrin repeat domain 20A, five novel genes, a pseudogene similar to part of eprin A, alpha (PABA peptide hydrolase) (MEP1A) and a CpG island, complete sequence Length = 180498 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 ctttggtcacccatgcttaa 362 |||||||||||||||||||| Sbjct: 170412 ctttggtcacccatgcttaa 170431
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome Length = 4545906 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 cagcaagagcacaaactcat 188 |||||||||||||||||||| Sbjct: 2367821 cagcaagagcacaaactcat 2367802
>emb|AL354718.10| Human DNA sequence from clone RP11-187C18 on chromosome 9 Contains a pseudogene similar to part of ribosomal protein L7a (RPL7A), three novel genes, three novel pseudogene and two CpG islands, complete sequence Length = 175271 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 ctttggtcacccatgcttaa 362 |||||||||||||||||||| Sbjct: 172244 ctttggtcacccatgcttaa 172225
>emb|AL159159.21| Human DNA sequence from clone RP11-88J11 on chromosome 13 Contains the 3' end of the CDK8 gene for cyclin-dependent kinase 8, complete sequence Length = 144626 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 176 agcacaaactcatgaaaatatgct 199 ||||||||| |||||||||||||| Sbjct: 65285 agcacaaacccatgaaaatatgct 65308
>emb|AL117340.3|HSBA192P3 Human DNA sequence from clone RP11-192P3 on chromosome 10 Contains a novel gene, the 5' end of the TCF8 gene for transcription factor 8 (represses interleukin 2 expression) (BZP,ZEB,ZEB1,AREB6,ZFHEP,NIL-2A,ZFHX1A,NIL-2-A), a pseudogene similar to part of serine palmitoyltransferase, long chain base subunit 1 (SPTLC1) (HSAN, HSN1, LBC1, LCB1, SPT1, SPTI) and two CpG islands, complete sequence Length = 187517 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 ctgaatgaataagttaggca 217 |||||||||||||||||||| Sbjct: 174428 ctgaatgaataagttaggca 174447
>emb|CR391971.7| Zebrafish DNA sequence from clone CH211-260O6 in linkage group 21, complete sequence Length = 129478 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 atgaaaatatgctgaatgaa 206 |||||||||||||||||||| Sbjct: 2764 atgaaaatatgctgaatgaa 2745
>emb|CR759923.6| Zebrafish DNA sequence from clone CH211-147L19 in linkage group 21, complete sequence Length = 147564 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 atgaaaatatgctgaatgaa 206 |||||||||||||||||||| Sbjct: 41288 atgaaaatatgctgaatgaa 41269
>emb|AL592220.6| Human DNA sequence from clone RP11-12P21 on chromosome 9 Contains a tumor suppressor deleted in oral cancer-related 1 (DOC-1R) pseudogene, a novel pseudogene and a CpG island, complete sequence Length = 163556 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 ctttggtcacccatgcttaa 362 |||||||||||||||||||| Sbjct: 31811 ctttggtcacccatgcttaa 31830
>emb|CR548622.8| Zebrafish DNA sequence from clone DKEY-189A9 in linkage group 11, complete sequence Length = 137993 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 atgaaaatatgctgaatgaa 206 |||||||||||||||||||| Sbjct: 16675 atgaaaatatgctgaatgaa 16694
>emb|CR385085.9| Zebrafish DNA sequence from clone CH211-195A16, complete sequence Length = 211060 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 atgaaaatatgctgaatgaa 206 |||||||||||||||||||| Sbjct: 156937 atgaaaatatgctgaatgaa 156956
>emb|CR318610.8| Zebrafish DNA sequence from clone CH211-14B14 in linkage group 5, complete sequence Length = 164564 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 atgaaaatatgctgaatgaa 206 |||||||||||||||||||| Sbjct: 152626 atgaaaatatgctgaatgaa 152607
>emb|BX530079.19| Zebrafish DNA sequence from clone DKEY-51A16 in linkage group 13, complete sequence Length = 166397 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 atgaaaatatgctgaatgaa 206 |||||||||||||||||||| Sbjct: 141164 atgaaaatatgctgaatgaa 141145
>gb|AC120338.4| Homo sapiens X BAC RP11-791N19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 109001 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 aaaatatgctgaatgaataa 209 |||||||||||||||||||| Sbjct: 94435 aaaatatgctgaatgaataa 94454
>gb|AC068305.30|AC068305 Homo sapiens 12 BAC RP11-557F20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 131811 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 ctgaatgaataagttaggca 217 |||||||||||||||||||| Sbjct: 54484 ctgaatgaataagttaggca 54503
>emb|BX294395.15| Zebrafish DNA sequence from clone CH211-220B11 in linkage group 5, complete sequence Length = 213232 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 atgaaaatatgctgaatgaa 206 |||||||||||||||||||| Sbjct: 65218 atgaaaatatgctgaatgaa 65237
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 512 actccaagttccaaagcacatctcccat 539 ||||||||||||| || ||||||||||| Sbjct: 13143520 actccaagttccacaggacatctcccat 13143493
>emb|BX296526.5| Zebrafish DNA sequence from clone DKEY-229D2 in linkage group 5, complete sequence Length = 179086 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 atgaaaatatgctgaatgaa 206 |||||||||||||||||||| Sbjct: 19761 atgaaaatatgctgaatgaa 19742
>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0012F14 Length = 168629 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 512 actccaagttccaaagcacatctcccat 539 ||||||||||||| || ||||||||||| Sbjct: 60708 actccaagttccacaggacatctcccat 60681
>emb|AL355000.11| Human DNA sequence from clone RP11-78N10 on chromosome 22, complete sequence Length = 219376 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 ctttggtcacccatgcttaa 362 |||||||||||||||||||| Sbjct: 90460 ctttggtcacccatgcttaa 90441
>emb|BX005463.5| Zebrafish DNA sequence from clone CH211-177H19 in linkage group 6, complete sequence Length = 163804 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 atgaaaatatgctgaatgaa 206 |||||||||||||||||||| Sbjct: 47713 atgaaaatatgctgaatgaa 47694
>dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0498E12 Length = 153523 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 628 aggtagggatcaacaatctg 647 |||||||||||||||||||| Sbjct: 49299 aggtagggatcaacaatctg 49280
>gb|AF225898.1|AF225898 Homo sapiens BAC clone 13d21, complete sequence Length = 198084 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 ctgaatgaataagttaggca 217 |||||||||||||||||||| Sbjct: 56841 ctgaatgaataagttaggca 56860
>dbj|AK065468.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013020G14, full insert sequence Length = 3151 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 512 actccaagttccaaagcacatctcccat 539 ||||||||||||| || ||||||||||| Sbjct: 2638 actccaagttccacaggacatctcccat 2611
>emb|BX649231.4| Zebrafish DNA sequence from clone DKEY-225H23 in linkage group 20, complete sequence Length = 153569 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 atgaaaatatgctgaatgaa 206 |||||||||||||||||||| Sbjct: 62267 atgaaaatatgctgaatgaa 62248
>dbj|AK061669.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-F10, full insert sequence Length = 1037 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 512 actccaagttccaaagcacatctcccat 539 ||||||||||||| || ||||||||||| Sbjct: 521 actccaagttccacaggacatctcccat 494
>emb|BX005011.6| Zebrafish DNA sequence from clone CH211-59F19 in linkage group 23, complete sequence Length = 178148 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 atgaaaatatgctgaatgaa 206 |||||||||||||||||||| Sbjct: 129196 atgaaaatatgctgaatgaa 129177
>gb|AC154195.1| Mus musculus BAC clone RP24-419F8 from 14, complete sequence Length = 159281 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 613 acaatctttcctttgaggta 632 |||||||||||||||||||| Sbjct: 120982 acaatctttcctttgaggta 121001
>gb|AC132363.3| Mus musculus BAC clone RP23-455N1 from 1, complete sequence Length = 180858 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 501 ctgaagagcaaactccaagt 520 |||||||||||||||||||| Sbjct: 88384 ctgaagagcaaactccaagt 88403
>emb|AL596456.15| Mouse DNA sequence from clone RP23-353K20 on chromosome 11, complete sequence Length = 228428 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 caaactccaagttccaaagc 528 |||||||||||||||||||| Sbjct: 27691 caaactccaagttccaaagc 27672 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,384,423 Number of Sequences: 3902068 Number of extensions: 5384423 Number of successful extensions: 99605 Number of sequences better than 10.0: 86 Number of HSP's better than 10.0 without gapping: 87 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99196 Number of HSP's gapped (non-prelim): 408 length of query: 654 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 631 effective length of database: 17,143,297,704 effective search space: 10817420851224 effective search space used: 10817420851224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)