ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6i23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_196525.1| Oryza sativa (japonica cultivar-group) putative... 234 3e-58
2dbj|AK071316.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 7e-56
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 127 5e-26
4gb|AC027658.1| Oryza sativa (japonica cultivar-group) BAC nbxb00... 127 5e-26
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 127 5e-26
6ref|XM_845973.1| PREDICTED: Canis familiaris similar to membrane... 46 0.14
7emb|AL138707.10| Human DNA sequence from clone RP11-430M15 on ch... 46 0.14
8gb|M20301.1|TMECG Theiler murine encephalomyelitis virus, comple... 44 0.54
9ref|NM_001031089.1| Gallus gallus similar to Expressed sequence ... 42 2.1
10emb|AJ719891.1| Gallus gallus mRNA for hypothetical protein, clo... 42 2.1
11gb|AC165074.2| Mus musculus BAC clone RP24-501F1 from chromosome... 40 8.5
12gb|AC146600.4| Mus musculus BAC clone RP23-386G7 from chromosome... 40 8.5
13gb|AC151982.4| Mus musculus BAC clone RP23-445J16 from chromosom... 40 8.5
14gb|AC139325.4| Mus musculus BAC clone RP24-373O11 from chromosom... 40 8.5
15gb|AC126693.3| Mus musculus BAC clone RP23-247E23 from chromosom... 40 8.5
16ref|XM_781207.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 8.5
17emb|BX062381.1|CNS09KAP Single read from an extremity of a full-... 40 8.5
18emb|BX062380.1|CNS09KAO Single read from an extremity of a full-... 40 8.5
19emb|AL939104.1|SCO939104 Streptomyces coelicolor A3(2) complete ... 40 8.5
20gb|AC087407.27| Homo sapiens 3 BAC CTC-269B10 (CalTech Clone Lib... 40 8.5
21gb|AC157823.2| Mus musculus BAC clone RP23-382L21 from chromosom... 40 8.5
22dbj|AP006185.1| Sus scrofa CC chemokine receptor genes (CCR2, CC... 40 8.5
23gb|AC157599.3| Mus musculus BAC clone RP23-138L13 from chromosom... 40 8.5
24gb|AC007320.3|AC007320 Homo sapiens BAC clone RP11-477B5 from Y,... 40 8.5
25ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P... 40 8.5
26gb|AC008041.5| Homo sapiens 3 BAC RPCI11-469J4 (Roswell Park Can... 40 8.5
27ref|XM_308204.2| Anopheles gambiae str. PEST ENSANGP00000021556 ... 40 8.5
28gb|AC155271.1| Mus musculus BAC clone RP23-204F12 from 16, compl... 40 8.5
29dbj|AP001730.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 8.5
30gb|AC154594.2| Mus musculus BAC clone RP23-350L7 from chromosome... 40 8.5
31gb|AC101890.9| Mus musculus chromosome 1, clone RP23-467L1, comp... 40 8.5
32gb|AE000512.1| Thermotoga maritima MSB8, complete genome 40 8.5
33gb|AF008243.1|AF008243 Homo sapiens cosmid clone C102H1064 from ... 40 8.5
34gb|AC026191.4| Homo sapiens chromosome 3 clone RP11-380O24 map 3... 40 8.5
35emb|AL844895.6| Mouse DNA sequence from clone RP23-359N12 on chr... 40 8.5
36gb|AC018506.5| Homo sapiens chromosome 3 clone RP11-58B17 map 3p... 40 8.5
37dbj|AP000160.1| Homo sapiens genomic DNA, chromosome 21q22.2, DS... 40 8.5
38dbj|AP000018.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrom... 40 8.5
39dbj|AP001417.2| Homo sapiens genomic DNA, chromosome 21q22.2, LB... 40 8.5 
>ref|NM_196525.1| Oryza sativa (japonica cultivar-group) putative heat shock protein
           (OSJNBa0006I13.12), mRNA
          Length = 555

 Score =  234 bits (118), Expect = 3e-58
 Identities = 349/426 (81%)
 Strand = Plus / Minus

                                                                       
Query: 189 tcttgacatactcttgccgcaccggatggtcctcctgaggccggttgtgggcggtccaca 248
           |||||||||||||||||| ||| |||||||| ||||| ||||||||||  |||||||| |
Sbjct: 514 tcttgacatactcttgcctcacaggatggtcttcctgtggccggttgtatgcggtccaga 455

                                                                       
Query: 249 ctggttctccgaggaagagcctcatgagcttcacatggttggcggcgtcgagggtgaacc 308
           |||||||||| | |||||||||||||||||| | || ||||  |  ||||| | ||||||
Sbjct: 454 ctggttctccaatgaagagcctcatgagcttgatatagttgttgctgtcgacgatgaacc 395

                                                                       
Query: 309 gatgataaattccagccggcagcacgatcatatccccttcttttatccagatccgaaccc 368
           |||||||||| ||||| ||||| | |||||| || || ||||||||||| ||||||| ||
Sbjct: 394 gatgataaatcccagctggcaggatgatcatgtctccctcttttatccaaatccgaatcc 335

                                                                       
Query: 369 acttgtcatccttgtcgcgcacatcaaaatacccgccgccttccaagcagtagcggatct 428
           | |||||||||||||| || |||||||| || ||||  || ||||||||||| |||||||
Sbjct: 334 atttgtcatccttgtcacggacatcaaagtaaccgctaccctccaagcagtaccggatct 275

                                                                       
Query: 429 cttcgtcggcatgcatgtgctctgtgaagaaattcttgagcttctcctcaaagtttgcca 488
           |||| || ||||| ||||||||     ||||  |||| |||||||||||| | ||| |||
Sbjct: 274 cttcatcagcatgaatgtgctcacaatagaagctcttcagcttctcctcataattttcca 215

                                                                       
Query: 489 actttccagggcatatatccagataatccatgtagctgtatcccttgtctttgcggattt 548
           | ||  |||||||||| ||   |  ||| | ||||||||||||  | ||| |||||||||
Sbjct: 214 atttatcagggcatatctcagtaagatcaaagtagctgtatcctctttctctgcggattt 155

                                                                       
Query: 549 tcgctagctcttgttcactttcggacttctttgggtccaaatgccaatataacacgccaa 608
           | |  ||||||| ||| ||||| |||||||| || ||||| |||||||| ||||| || |
Sbjct: 154 ttgtgagctcttcttcgctttcagacttcttaggatccaagtgccaatacaacacaccga 95

                 
Query: 609 tctctt 614
           ||||||
Sbjct: 94  tctctt 89
to top
>dbj|AK071316.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083J21, full
           insert sequence
          Length = 1125

 Score =  226 bits (114), Expect = 7e-56
 Identities = 348/426 (81%)
 Strand = Plus / Minus

                                                                       
Query: 189 tcttgacatactcttgccgcaccggatggtcctcctgaggccggttgtgggcggtccaca 248
           |||||||||||||||||| ||| |||||||| ||||| ||||||||||  |||||||| |
Sbjct: 790 tcttgacatactcttgcctcacaggatggtcttcctgtggccggttgtatgcggtccaga 731

                                                                       
Query: 249 ctggttctccgaggaagagcctcatgagcttcacatggttggcggcgtcgagggtgaacc 308
           |||||||||| | |||||||||||||||||| | || ||||  |  ||||| | ||||||
Sbjct: 730 ctggttctccaatgaagagcctcatgagcttgatatagttgttgctgtcgacgatgaacc 671

                                                                       
Query: 309 gatgataaattccagccggcagcacgatcatatccccttcttttatccagatccgaaccc 368
           |||||||||| ||||| ||||| | |||||| || || ||||||||||| ||||||| ||
Sbjct: 670 gatgataaatcccagctggcaggatgatcatgtctccctcttttatccaaatccgaatcc 611

                                                                       
Query: 369 acttgtcatccttgtcgcgcacatcaaaatacccgccgccttccaagcagtagcggatct 428
           | |||||||||||||| || |||||||| || ||||  || ||||||||||| |||||||
Sbjct: 610 atttgtcatccttgtcacggacatcaaagtaaccgctaccctccaagcagtaccggatct 551

                                                                       
Query: 429 cttcgtcggcatgcatgtgctctgtgaagaaattcttgagcttctcctcaaagtttgcca 488
           |||| || ||||| ||||||||     ||||  |||| |||||||||||| | ||| |||
Sbjct: 550 cttcatcagcatgaatgtgctcacaatagaagctcttcagcttctcctcataattttcca 491

                                                                       
Query: 489 actttccagggcatatatccagataatccatgtagctgtatcccttgtctttgcggattt 548
           | ||  |||||||||| ||   |  ||| | ||||||||| ||  | ||| |||||||||
Sbjct: 490 atttatcagggcatatctcagtaagatcaaagtagctgtaccctctttctctgcggattt 431

                                                                       
Query: 549 tcgctagctcttgttcactttcggacttctttgggtccaaatgccaatataacacgccaa 608
           | |  ||||||| ||| ||||| |||||||| || ||||| |||||||| ||||| || |
Sbjct: 430 ttgtgagctcttcttcgctttcagacttcttaggatccaagtgccaatacaacacaccga 371

                 
Query: 609 tctctt 614
           ||||||
Sbjct: 370 tctctt 365
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  127 bits (64), Expect = 5e-26
 Identities = 127/148 (85%)
 Strand = Plus / Plus

                                                                            
Query: 303      tgaaccgatgataaattccagccggcagcacgatcatatccccttcttttatccagatcc 362
                |||||||||||||||| ||||| ||||| | |||||| || || ||||||||||| ||||
Sbjct: 14243961 tgaaccgatgataaatcccagctggcaggatgatcatgtctccctcttttatccaaatcc 14244020

                                                                            
Query: 363      gaacccacttgtcatccttgtcgcgcacatcaaaatacccgccgccttccaagcagtagc 422
                ||| ||| |||||||||||||| || |||||||| || ||||  || ||||||||||| |
Sbjct: 14244021 gaatccatttgtcatccttgtcacggacatcaaagtaaccgctaccctccaagcagtacc 14244080

                                            
Query: 423      ggatctcttcgtcggcatgcatgtgctc 450
                |||||||||| || ||||| ||||||||
Sbjct: 14244081 ggatctcttcatcagcatgaatgtgctc 14244108



 Score =  107 bits (54), Expect = 4e-20
 Identities = 81/90 (90%)
 Strand = Plus / Plus

                                                                            
Query: 189      tcttgacatactcttgccgcaccggatggtcctcctgaggccggttgtgggcggtccaca 248
                |||||||||||||||||| ||| |||||||| ||||| ||||||||||  |||||||| |
Sbjct: 14243290 tcttgacatactcttgcctcacaggatggtcttcctgtggccggttgtatgcggtccaga 14243349

                                              
Query: 249      ctggttctccgaggaagagcctcatgagct 278
                |||||||||| | |||||||||||||||||
Sbjct: 14243350 ctggttctccaatgaagagcctcatgagct 14243379



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 78/94 (82%)
 Strand = Plus / Plus

                                                                            
Query: 520      gtagctgtatcccttgtctttgcggattttcgctagctcttgttcactttcggacttctt 579
                ||||||||||||  | ||| |||||||||| |  ||||||| ||| ||||| ||||||||
Sbjct: 14244269 gtagctgtatcctctttctctgcggatttttgtgagctcttcttcgctttcagacttctt 14244328

                                                  
Query: 580      tgggtccaaatgccaatataacacgccaatctct 613
                 || ||||| |||||||| ||||| || ||||||
Sbjct: 14244329 aggatccaagtgccaatacaacacaccgatctct 14244362
to top
>gb|AC027658.1| Oryza sativa (japonica cultivar-group) BAC nbxb0006I13 chromosome 10,
              complete sequence
          Length = 142737

 Score =  127 bits (64), Expect = 5e-26
 Identities = 127/148 (85%)
 Strand = Plus / Plus

                                                                          
Query: 303    tgaaccgatgataaattccagccggcagcacgatcatatccccttcttttatccagatcc 362
              |||||||||||||||| ||||| ||||| | |||||| || || ||||||||||| ||||
Sbjct: 116034 tgaaccgatgataaatcccagctggcaggatgatcatgtctccctcttttatccaaatcc 116093

                                                                          
Query: 363    gaacccacttgtcatccttgtcgcgcacatcaaaatacccgccgccttccaagcagtagc 422
              ||| ||| |||||||||||||| || |||||||| || ||||  || ||||||||||| |
Sbjct: 116094 gaatccatttgtcatccttgtcacggacatcaaagtaaccgctaccctccaagcagtacc 116153

                                          
Query: 423    ggatctcttcgtcggcatgcatgtgctc 450
              |||||||||| || ||||| ||||||||
Sbjct: 116154 ggatctcttcatcagcatgaatgtgctc 116181



 Score =  107 bits (54), Expect = 4e-20
 Identities = 81/90 (90%)
 Strand = Plus / Plus

                                                                          
Query: 189    tcttgacatactcttgccgcaccggatggtcctcctgaggccggttgtgggcggtccaca 248
              |||||||||||||||||| ||| |||||||| ||||| ||||||||||  |||||||| |
Sbjct: 115363 tcttgacatactcttgcctcacaggatggtcttcctgtggccggttgtatgcggtccaga 115422

                                            
Query: 249    ctggttctccgaggaagagcctcatgagct 278
              |||||||||| | |||||||||||||||||
Sbjct: 115423 ctggttctccaatgaagagcctcatgagct 115452



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 78/94 (82%)
 Strand = Plus / Plus

                                                                          
Query: 520    gtagctgtatcccttgtctttgcggattttcgctagctcttgttcactttcggacttctt 579
              ||||||||||||  | ||| |||||||||| |  ||||||| ||| ||||| ||||||||
Sbjct: 116342 gtagctgtatcctctttctctgcggatttttgtgagctcttcttcgctttcagacttctt 116401

                                                
Query: 580    tgggtccaaatgccaatataacacgccaatctct 613
               || ||||| |||||||| ||||| || ||||||
Sbjct: 116402 aggatccaagtgccaatacaacacaccgatctct 116435
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  127 bits (64), Expect = 5e-26
 Identities = 127/148 (85%)
 Strand = Plus / Plus

                                                                            
Query: 303      tgaaccgatgataaattccagccggcagcacgatcatatccccttcttttatccagatcc 362
                |||||||||||||||| ||||| ||||| | |||||| || || ||||||||||| ||||
Sbjct: 14252203 tgaaccgatgataaatcccagctggcaggatgatcatgtctccctcttttatccaaatcc 14252262

                                                                            
Query: 363      gaacccacttgtcatccttgtcgcgcacatcaaaatacccgccgccttccaagcagtagc 422
                ||| ||| |||||||||||||| || |||||||| || ||||  || ||||||||||| |
Sbjct: 14252263 gaatccatttgtcatccttgtcacggacatcaaagtaaccgctaccctccaagcagtacc 14252322

                                            
Query: 423      ggatctcttcgtcggcatgcatgtgctc 450
                |||||||||| || ||||| ||||||||
Sbjct: 14252323 ggatctcttcatcagcatgaatgtgctc 14252350



 Score =  107 bits (54), Expect = 4e-20
 Identities = 81/90 (90%)
 Strand = Plus / Plus

                                                                            
Query: 189      tcttgacatactcttgccgcaccggatggtcctcctgaggccggttgtgggcggtccaca 248
                |||||||||||||||||| ||| |||||||| ||||| ||||||||||  |||||||| |
Sbjct: 14251532 tcttgacatactcttgcctcacaggatggtcttcctgtggccggttgtatgcggtccaga 14251591

                                              
Query: 249      ctggttctccgaggaagagcctcatgagct 278
                |||||||||| | |||||||||||||||||
Sbjct: 14251592 ctggttctccaatgaagagcctcatgagct 14251621



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 78/94 (82%)
 Strand = Plus / Plus

                                                                            
Query: 520      gtagctgtatcccttgtctttgcggattttcgctagctcttgttcactttcggacttctt 579
                ||||||||||||  | ||| |||||||||| |  ||||||| ||| ||||| ||||||||
Sbjct: 14252511 gtagctgtatcctctttctctgcggatttttgtgagctcttcttcgctttcagacttctt 14252570

                                                  
Query: 580      tgggtccaaatgccaatataacacgccaatctct 613
                 || ||||| |||||||| ||||| || ||||||
Sbjct: 14252571 aggatccaagtgccaatacaacacaccgatctct 14252604
to top
>ref|XM_845973.1| PREDICTED: Canis familiaris similar to membrane-type 1 matrix
           metalloproteinase cytoplasmic tail binding protein-1
           (LOC608836), partial mRNA
          Length = 764

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                       
Query: 367 ccacttgtcatccttgtcgcgcacatcaaaatacccgccgccttccaagcagtagcggat 426
           |||||| || || ||||| |||||||| || ||||||| ||| ||||||  |||||||||
Sbjct: 222 ccacttctcgtctttgtctcgcacatcgaagtacccgctgccgtccaagatgtagcggat 163

              
Query: 427 ctc 429
           |||
Sbjct: 162 ctc 160
to top
>emb|AL138707.10| Human DNA sequence from clone RP11-430M15 on chromosome 13 Contains the
              3' end of a novel gene (FLJ22153) and the 3' end of the
              gene for a novel protein (ortholog of rat putative four
              repeat ion channel), complete sequence
          Length = 181311

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 337    catatccccttcttttatccaga 359
              |||||||||||||||||||||||
Sbjct: 175388 catatccccttcttttatccaga 175410
to top
>gb|M20301.1|TMECG Theiler murine encephalomyelitis virus, complete genome
          Length = 8093

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 446  tgctctgtgaagaaattcttga 467
            ||||||||||||||||||||||
Sbjct: 7361 tgctctgtgaagaaattcttga 7340
to top
>ref|NM_001031089.1| Gallus gallus similar to Expressed sequence AL024210 (LOC421918),
           mRNA
          Length = 2251

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 371 ttgtcatccttgtcgcgcacatcaaaata 399
           |||||||||||||| || |||||||||||
Sbjct: 376 ttgtcatccttgtcccgaacatcaaaata 348
to top
>emb|AJ719891.1| Gallus gallus mRNA for hypothetical protein, clone 7o8
          Length = 2251

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 371 ttgtcatccttgtcgcgcacatcaaaata 399
           |||||||||||||| || |||||||||||
Sbjct: 376 ttgtcatccttgtcccgaacatcaaaata 348
to top
>gb|AC165074.2| Mus musculus BAC clone RP24-501F1 from chromosome 12, complete sequence
          Length = 166016

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 488    aactttccagggcatatatccaga 511
              |||||||| |||||||||||||||
Sbjct: 147317 aactttcctgggcatatatccaga 147340
to top
>gb|AC146600.4| Mus musculus BAC clone RP23-386G7 from chromosome 17, complete sequence
          Length = 198403

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 488   aactttccagggcatatatccaga 511
             |||||||| |||||||||||||||
Sbjct: 38031 aactttcctgggcatatatccaga 38008
to top
>gb|AC151982.4| Mus musculus BAC clone RP23-445J16 from chromosome 12, complete sequence
          Length = 183898

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 488    aactttccagggcatatatccaga 511
              |||||||| |||||||||||||||
Sbjct: 156977 aactttcctgggcatatatccaga 156954
to top
>gb|AC139325.4| Mus musculus BAC clone RP24-373O11 from chromosome 16, complete sequence
          Length = 155728

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 488    aactttccagggcatatatccaga 511
              |||||||| |||||||||||||||
Sbjct: 142232 aactttcctgggcatatatccaga 142209
to top
>gb|AC126693.3| Mus musculus BAC clone RP23-247E23 from chromosome 16, complete sequence
          Length = 199505

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 488    aactttccagggcatatatccaga 511
              |||||||| |||||||||||||||
Sbjct: 140228 aactttcctgggcatatatccaga 140251
to top
>ref|XM_781207.1| PREDICTED: Strongylocentrotus purpuratus similar to cytochrome
           P450, family 2, subfamily U, polypeptide 1 (LOC581193),
           mRNA
          Length = 1470

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 415 gcagtagcggatctcttcgt 434
           ||||||||||||||||||||
Sbjct: 838 gcagtagcggatctcttcgt 857
to top
>emb|BX062381.1|CNS09KAP Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC43CF04 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 552

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 470 ttctcctcaaagtttgccaa 489
           ||||||||||||||||||||
Sbjct: 520 ttctcctcaaagtttgccaa 539
to top
>emb|BX062380.1|CNS09KAO Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC43CF04 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 901

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 470 ttctcctcaaagtttgccaa 489
           ||||||||||||||||||||
Sbjct: 698 ttctcctcaaagtttgccaa 679
to top
>emb|AL939104.1|SCO939104 Streptomyces coelicolor A3(2) complete genome; segment 1/29
          Length = 299050

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 221    tcctgaggccggttgtgggcggtccaca 248
              ||||| ||||||| ||||||||||||||
Sbjct: 205131 tcctgcggccggtcgtgggcggtccaca 205158
to top
>gb|AC087407.27| Homo sapiens 3 BAC CTC-269B10 (CalTech Clone Library C) complete
             sequence
          Length = 102326

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 334   gatcatatccccttctttta 353
             ||||||||||||||||||||
Sbjct: 82825 gatcatatccccttctttta 82806
to top
>gb|AC157823.2| Mus musculus BAC clone RP23-382L21 from chromosome 12, complete
             sequence
          Length = 203726

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 488   aactttccagggcatatatccaga 511
             |||||||| |||||||||||||||
Sbjct: 24656 aactttcctgggcatatatccaga 24679
to top
>dbj|AP006185.1| Sus scrofa CC chemokine receptor genes (CCR2, CCR5, CCRL2, LTF, TMEM7,
              LRRC2), complete cds, clone: 0475A03
          Length = 165558

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 492    ttccagggcatatatccaga 511
              ||||||||||||||||||||
Sbjct: 160469 ttccagggcatatatccaga 160488
to top
>gb|AC157599.3| Mus musculus BAC clone RP23-138L13 from chromosome 17, complete
           sequence
          Length = 185556

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 488 aactttccagggcatatatccaga 511
           |||||||| |||||||||||||||
Sbjct: 288 aactttcctgggcatatatccaga 311
to top
>gb|AC007320.3|AC007320 Homo sapiens BAC clone RP11-477B5 from Y, complete sequence
          Length = 187894

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 451   tgtgaagaaattcttgagcttctc 474
             ||||||||||| ||||||||||||
Sbjct: 54638 tgtgaagaaatacttgagcttctc 54661
to top
>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
              (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 451    tgtgaagaaattcttgagcttctc 474
              ||||||||||| ||||||||||||
Sbjct: 506039 tgtgaagaaatacttgagcttctc 506062
to top
>gb|AC008041.5| Homo sapiens 3 BAC RPCI11-469J4 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 178896

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 143   cttcaatgtgctgccaaagcatgaccag 170
             |||| ||||||| |||||||||||||||
Sbjct: 26810 cttctatgtgctaccaaagcatgaccag 26783
to top
>ref|XM_308204.2| Anopheles gambiae str. PEST ENSANGP00000021556
           (ENSANGG00000019067), partial mRNA
          Length = 1022

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 470 ttctcctcaaagtttgccaa 489
           ||||||||||||||||||||
Sbjct: 521 ttctcctcaaagtttgccaa 502
to top
>gb|AC155271.1| Mus musculus BAC clone RP23-204F12 from 16, complete sequence
          Length = 204679

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 488    aactttccagggcatatatccaga 511
              |||||||| |||||||||||||||
Sbjct: 167294 aactttcctgggcatatatccaga 167317
to top
>dbj|AP001730.1| Homo sapiens genomic DNA, chromosome 21q, section 74/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 476    tcaaagtttgccaactttcc 495
              ||||||||||||||||||||
Sbjct: 292474 tcaaagtttgccaactttcc 292455
to top
>gb|AC154594.2| Mus musculus BAC clone RP23-350L7 from chromosome 14, complete sequence
          Length = 195046

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    ttacaagtgaataataacaa 35
             ||||||||||||||||||||
Sbjct: 82260 ttacaagtgaataataacaa 82279
to top
>gb|AC101890.9| Mus musculus chromosome 1, clone RP23-467L1, complete sequence
          Length = 174897

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 493   tccagggcatatatccagat 512
             ||||||||||||||||||||
Sbjct: 25199 tccagggcatatatccagat 25218
to top
>gb|AE000512.1| Thermotoga maritima MSB8, complete genome
          Length = 1860725

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 332     acgatcatatccccttcttttatc 355
               ||||||| ||||||||||||||||
Sbjct: 1277223 acgatcacatccccttcttttatc 1277200
to top
>gb|AF008243.1|AF008243 Homo sapiens cosmid clone C102H1064 from 21q22.2, complete sequence
          Length = 34037

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 476  tcaaagtttgccaactttcc 495
            ||||||||||||||||||||
Sbjct: 5765 tcaaagtttgccaactttcc 5784
to top
>gb|AC026191.4| Homo sapiens chromosome 3 clone RP11-380O24 map 3p, complete sequence
          Length = 164528

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 334   gatcatatccccttctttta 353
             ||||||||||||||||||||
Sbjct: 31389 gatcatatccccttctttta 31370
to top
>emb|AL844895.6| Mouse DNA sequence from clone RP23-359N12 on chromosome 2, complete
              sequence
          Length = 210427

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 488    aactttccagggcatatatccaga 511
              |||||||| |||||||||||||||
Sbjct: 161921 aactttcctgggcatatatccaga 161944
to top
>gb|AC018506.5| Homo sapiens chromosome 3 clone RP11-58B17 map 3p, complete sequence
          Length = 191575

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 334    gatcatatccccttctttta 353
              ||||||||||||||||||||
Sbjct: 158186 gatcatatccccttctttta 158167
to top
>dbj|AP000160.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone
             D47-S479, segment 12/16, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 476   tcaaagtttgccaactttcc 495
             ||||||||||||||||||||
Sbjct: 39891 tcaaagtttgccaactttcc 39872
to top
>dbj|AP000018.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 9/13
          Length = 100000

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 476   tcaaagtttgccaactttcc 495
             ||||||||||||||||||||
Sbjct: 74287 tcaaagtttgccaactttcc 74268
to top
>dbj|AP001417.2| Homo sapiens genomic DNA, chromosome 21q22.2, LB7T-ERG region,
             clone:D40
          Length = 89723

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 476   tcaaagtttgccaactttcc 495
             ||||||||||||||||||||
Sbjct: 23039 tcaaagtttgccaactttcc 23020


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,881,304
Number of Sequences: 3902068
Number of extensions: 4881304
Number of successful extensions: 137419
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 137200
Number of HSP's gapped (non-prelim): 217
length of query: 621
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 598
effective length of database: 17,143,297,704
effective search space: 10251692026992
effective search space used: 10251692026992
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top