ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6i01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 220 4e-54
2dbj|AP003930.3| Oryza sativa (japonica cultivar-group) genomic D... 220 4e-54
3dbj|AP003850.2| Oryza sativa (japonica cultivar-group) genomic D... 220 4e-54
4dbj|AK120277.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 1e-41
5ref|XR_003117.1| PREDICTED: Mus musculus similar to Glyceraldehy... 46 0.14
6emb|BX248984.11| Mouse DNA sequence from clone RP23-278P12 on ch... 46 0.14
7gb|AC131661.4| Mus musculus BAC clone RP23-251N10 from 1, comple... 46 0.14
8ref|XR_002955.1| PREDICTED: Mus musculus similar to Glyceraldehy... 42 2.1
9ref|XR_002189.1| PREDICTED: Mus musculus similar to Glyceraldehy... 42 2.1
10gb|AY594330.1| Mus musculus cytochrome P450 17-alpha hydroxylase... 42 2.1
11gb|AC161865.4| Mus musculus chromosome 19, clone RP23-218F7, com... 42 2.1
12emb|AL672180.11| Mouse DNA sequence from clone RP23-419G22 on ch... 42 2.1
13gb|AC116792.17| Mus musculus chromosome 6, clone RP24-304O23, co... 40 8.4
14ref|XM_636614.1| Dictyostelium discoideum hypothetical protein (... 40 8.4
15gb|AC122159.30| Mus musculus strain 129/Sv clone ct7-575j15 map ... 40 8.4
16gb|AC093349.6| Mus musculus chromosome 19, clone RP23-16C14, com... 40 8.4
17gb|AC144945.4| Mus musculus BAC clone RP23-334D20 from chromosom... 40 8.4
18ref|XM_707082.1| Candida albicans SC5314 hypothetical protein (C... 40 8.4
19ref|XM_706609.1| Candida albicans SC5314 hypothetical protein (C... 40 8.4
20gb|AC147379.3| Pan troglodytes BAC clone RP43-175C18 from 7, com... 40 8.4
21ref|XR_004465.1| PREDICTED: Mus musculus similar to Glyceraldehy... 40 8.4
22gb|AC145990.3| Pan troglodytes BAC clone RP43-168N19 from 7, com... 40 8.4
23gb|AC117232.3| Mus musculus BAC clone RP23-405K2 from chromosome... 40 8.4
24gb|AC133889.9| Mus musculus chromosome 16, clone RP23-380I13, co... 40 8.4
25gb|AC006354.2| Homo sapiens PAC clone RP5-1091B14 from 7, comple... 40 8.4
26gb|AC121125.9| Mus musculus chromosome 5, clone RP23-10F17, comp... 40 8.4
27gb|AC139154.3| Mus musculus chromosome 7 clone RP24-356B8, compl... 40 8.4
28gb|BC035121.1| Homo sapiens vacuolar protein sorting 4 homolog A... 40 8.4
29gb|BC047932.1| Homo sapiens vacuolar protein sorting 4 homolog A... 40 8.4
30gb|BC013021.2| Homo sapiens vacuolar protein sorting 4 homolog A... 40 8.4
31emb|AL513307.10| Human DNA sequence from clone RP11-239E12 on ch... 40 8.4
32ref|NM_013245.2| Homo sapiens vacuolar protein sorting 4 homolog... 40 8.4
33emb|AL049554.2|HSJ514B11 Human DNA sequence from clone RP3-514B1... 40 8.4
34gb|AC144991.1| Homo sapiens chromosome 5 clone XXfos-84059E8, co... 40 8.4
35gb|AC144990.1| Homo sapiens chromosome 5 clone XXfos-8092D3, com... 40 8.4
36emb|AL133634.1|HSM801503 Homo sapiens mRNA; cDNA DKFZp434E0418 (... 40 8.4
37emb|BX571731.5| Zebrafish DNA sequence from clone CH211-195D1 in... 40 8.4
38gb|BC022677.1| Mus musculus zinc finger CCCH type containing 10,... 40 8.4
39emb|CR603988.1| full-length cDNA clone CS0DL008YL14 of B cells (... 40 8.4
40gb|AC004673.1| Homo sapiens X BAC GSHB-590J15 (Genome Systems Hu... 40 8.4
41gb|AF132747.1| Homo sapiens SKD2 protein mRNA, complete cds 40 8.4
42gb|AC158626.6| Mus musculus 6 BAC RP23-4F16 (Roswell Park Cancer... 40 8.4
43gb|AC026464.7| Homo sapiens chromosome 16 clone RP11-343C2, comp... 40 8.4
44dbj|AK050662.1| Mus musculus 2 days neonate thymus thymic cells ... 40 8.4
45dbj|AK031312.1| Mus musculus 13 days embryo male testis cDNA, RI... 40 8.4
46ref|NM_134003.1| Mus musculus zinc finger CCCH type containing 1... 40 8.4
47gb|AF255952.1|AF255952 Homo sapiens vacuolar protein sorting VPS... 40 8.4
48gb|AC026474.7| Homo sapiens chromosome 16 clone RP11-70O5, compl... 40 8.4
49gb|AC124861.3| Homo sapiens BAC clone RP11-622A18 from 2, comple... 40 8.4
50gb|AC022368.2|AC022368 Mus musculus strain C57BL6/J clone RP23-1... 40 8.4
51gb|AF282903.1| Homo sapiens vacuolar protein sorting factor 4A (... 40 8.4
52gb|AF495776.1| Ludwigia peploides chloroplast NADH dehydrogenase... 40 8.4
53ref|XM_345008.2| PREDICTED: Rattus norvegicus similar to Glycera... 40 8.4
54gb|AC073165.7|AC073165 Homo sapiens chromosome 5 clone RP11-54E9... 40 8.4
55dbj|AK025850.1| Homo sapiens cDNA: FLJ22197 fis, clone HRC01216,... 40 8.4
56dbj|AK000200.1| Homo sapiens cDNA FLJ20193 fis, clone COLF0795 40 8.4
57gb|AF112215.1|AF112215 Homo sapiens SKD1 protein mRNA, complete cds 40 8.4
58gb|AF159063.1|AF159063 Homo sapiens SKD1-homolog mRNA, complete cds 40 8.4
59emb|AL928611.9| Mouse DNA sequence from clone RP23-263O5 on chro... 40 8.4
60gb|AC122538.4| Mus musculus BAC clone RP24-548J11 from 16, compl... 40 8.4
61gb|AC149062.3| Mus musculus BAC clone RP23-183E20 from 7, comple... 40 8.4 
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  220 bits (111), Expect = 4e-54
 Identities = 315/383 (82%)
 Strand = Plus / Plus

                                                                            
Query: 236      ctacgaaacattcggtagatggcagctgtacttcaacctaggatgtgcgcggagtgcttg 295
                |||| ||||||| |||| ||||||| ||||||||||| | |||||||  ||||| |||||
Sbjct: 20061951 ctacaaaacattgggtaaatggcagttgtacttcaactttggatgtgaccggagcgcttg 20062010

                                                                            
Query: 296      ttgaagagcagtgtccactgtgactccctcacggaacaacttgtcatacaagaggcacat 355
                 || || || |||||||| || || ||||| ||||||| ||||||||||| |||||| ||
Sbjct: 20062011 ctggagcgccgtgtccaccgtcacgccctcgcggaacagcttgtcatacaggaggcagat 20062070

                                                                            
Query: 356      aaattgagccaagtactcctcctcatcaatatccttgttgccttcaccgtttctctcagc 415
                 || ||||||| ||||||||| ||||| | ||| ||| |||  || || ||| ||||   
Sbjct: 20062071 gaactgagccatgtactcctcatcatcgaaatctttgctgcgatcgccatttttctccat 20062130

                                                                            
Query: 416      atcgctgtcttcccagtcacttatagggctaacaggttcgggttccgactcatcagcttc 475
                 ||||||||||||||||||||  |||||||||||||||| |  || |||||   ||| ||
Sbjct: 20062131 gtcgctgtcttcccagtcactcgtagggctaacaggttccgcctcagactcggaagcctc 20062190

                                                                            
Query: 476      atcatccccaatgacaaacttcccattctcgaggcttccactgacatccataccatggta 535
                ||||||  |||||||||||||||| ||||| ||||| ||| | || ||||| ||||||||
Sbjct: 20062191 atcatcggcaatgacaaacttcccgttctcaaggctgccatttacttccatcccatggta 20062250

                                                                            
Query: 536      tgcaattgcctgggaatctggaggctcgacagatgacgagatgactgctttggcaccaga 595
                | | || | |||||||||||||||||| |  |  ||||||||||||||||||||||||||
Sbjct: 20062251 tactatagactgggaatctggaggctccatggccgacgagatgactgctttggcaccaga 20062310

                                       
Query: 596      atccacgaatgccttgacaaggc 618
                ||||| |||||| ||||| ||||
Sbjct: 20062311 atccatgaatgctttgaccaggc 20062333
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>dbj|AP003930.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1657_A07
          Length = 125217

 Score =  220 bits (111), Expect = 4e-54
 Identities = 315/383 (82%)
 Strand = Plus / Plus

                                                                         
Query: 236   ctacgaaacattcggtagatggcagctgtacttcaacctaggatgtgcgcggagtgcttg 295
             |||| ||||||| |||| ||||||| ||||||||||| | |||||||  ||||| |||||
Sbjct: 26554 ctacaaaacattgggtaaatggcagttgtacttcaactttggatgtgaccggagcgcttg 26613

                                                                         
Query: 296   ttgaagagcagtgtccactgtgactccctcacggaacaacttgtcatacaagaggcacat 355
              || || || |||||||| || || ||||| ||||||| ||||||||||| |||||| ||
Sbjct: 26614 ctggagcgccgtgtccaccgtcacgccctcgcggaacagcttgtcatacaggaggcagat 26673

                                                                         
Query: 356   aaattgagccaagtactcctcctcatcaatatccttgttgccttcaccgtttctctcagc 415
              || ||||||| ||||||||| ||||| | ||| ||| |||  || || ||| ||||   
Sbjct: 26674 gaactgagccatgtactcctcatcatcgaaatctttgctgcgatcgccatttttctccat 26733

                                                                         
Query: 416   atcgctgtcttcccagtcacttatagggctaacaggttcgggttccgactcatcagcttc 475
              ||||||||||||||||||||  |||||||||||||||| |  || |||||   ||| ||
Sbjct: 26734 gtcgctgtcttcccagtcactcgtagggctaacaggttccgcctcagactcggaagcctc 26793

                                                                         
Query: 476   atcatccccaatgacaaacttcccattctcgaggcttccactgacatccataccatggta 535
             ||||||  |||||||||||||||| ||||| ||||| ||| | || ||||| ||||||||
Sbjct: 26794 atcatcggcaatgacaaacttcccgttctcaaggctgccatttacttccatcccatggta 26853

                                                                         
Query: 536   tgcaattgcctgggaatctggaggctcgacagatgacgagatgactgctttggcaccaga 595
             | | || | |||||||||||||||||| |  |  ||||||||||||||||||||||||||
Sbjct: 26854 tactatagactgggaatctggaggctccatggccgacgagatgactgctttggcaccaga 26913

                                    
Query: 596   atccacgaatgccttgacaaggc 618
             ||||| |||||| ||||| ||||
Sbjct: 26914 atccatgaatgctttgaccaggc 26936
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>dbj|AP003850.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1793_E11
          Length = 101342

 Score =  220 bits (111), Expect = 4e-54
 Identities = 315/383 (82%)
 Strand = Plus / Plus

                                                                         
Query: 236   ctacgaaacattcggtagatggcagctgtacttcaacctaggatgtgcgcggagtgcttg 295
             |||| ||||||| |||| ||||||| ||||||||||| | |||||||  ||||| |||||
Sbjct: 95511 ctacaaaacattgggtaaatggcagttgtacttcaactttggatgtgaccggagcgcttg 95570

                                                                         
Query: 296   ttgaagagcagtgtccactgtgactccctcacggaacaacttgtcatacaagaggcacat 355
              || || || |||||||| || || ||||| ||||||| ||||||||||| |||||| ||
Sbjct: 95571 ctggagcgccgtgtccaccgtcacgccctcgcggaacagcttgtcatacaggaggcagat 95630

                                                                         
Query: 356   aaattgagccaagtactcctcctcatcaatatccttgttgccttcaccgtttctctcagc 415
              || ||||||| ||||||||| ||||| | ||| ||| |||  || || ||| ||||   
Sbjct: 95631 gaactgagccatgtactcctcatcatcgaaatctttgctgcgatcgccatttttctccat 95690

                                                                         
Query: 416   atcgctgtcttcccagtcacttatagggctaacaggttcgggttccgactcatcagcttc 475
              ||||||||||||||||||||  |||||||||||||||| |  || |||||   ||| ||
Sbjct: 95691 gtcgctgtcttcccagtcactcgtagggctaacaggttccgcctcagactcggaagcctc 95750

                                                                         
Query: 476   atcatccccaatgacaaacttcccattctcgaggcttccactgacatccataccatggta 535
             ||||||  |||||||||||||||| ||||| ||||| ||| | || ||||| ||||||||
Sbjct: 95751 atcatcggcaatgacaaacttcccgttctcaaggctgccatttacttccatcccatggta 95810

                                                                         
Query: 536   tgcaattgcctgggaatctggaggctcgacagatgacgagatgactgctttggcaccaga 595
             | | || | |||||||||||||||||| |  |  ||||||||||||||||||||||||||
Sbjct: 95811 tactatagactgggaatctggaggctccatggccgacgagatgactgctttggcaccaga 95870

                                    
Query: 596   atccacgaatgccttgacaaggc 618
             ||||| |||||| ||||| ||||
Sbjct: 95871 atccatgaatgctttgaccaggc 95893
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>dbj|AK120277.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049C19, full
            insert sequence
          Length = 4229

 Score =  178 bits (90), Expect = 1e-41
 Identities = 246/298 (82%)
 Strand = Plus / Minus

                                                                        
Query: 321  ccctcacggaacaacttgtcatacaagaggcacataaattgagccaagtactcctcctca 380
            ||||| ||||||| ||||||||||| |||||| || || ||||||| ||||||||| |||
Sbjct: 4225 ccctcgcggaacagcttgtcatacaggaggcagatgaactgagccatgtactcctcatca 4166

                                                                        
Query: 381  tcaatatccttgttgccttcaccgtttctctcagcatcgctgtcttcccagtcacttata 440
            || | ||| ||| |||  || || ||| ||||    ||||||||||||||||||||  ||
Sbjct: 4165 tcgaaatctttgctgcgatcgccatttttctccatgtcgctgtcttcccagtcactcgta 4106

                                                                        
Query: 441  gggctaacaggttcgggttccgactcatcagcttcatcatccccaatgacaaacttccca 500
            |||||||||||||| |  || |||||   ||| ||||||||  |||||||||||||||| 
Sbjct: 4105 gggctaacaggttccgcctcagactcggaagcctcatcatcggcaatgacaaacttcccg 4046

                                                                        
Query: 501  ttctcgaggcttccactgacatccataccatggtatgcaattgcctgggaatctggaggc 560
            ||||| ||||| ||| | || ||||| ||||||||| | || | ||||||||||||||||
Sbjct: 4045 ttctcaaggctgccatttacttccatcccatggtatactatagactgggaatctggaggc 3986

                                                                      
Query: 561  tcgacagatgacgagatgactgctttggcaccagaatccacgaatgccttgacaaggc 618
            || |  |  ||||||||||||||||||||||||||||||| |||||| ||||| ||||
Sbjct: 3985 tccatggccgacgagatgactgctttggcaccagaatccatgaatgctttgaccaggc 3928
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>ref|XR_003117.1| PREDICTED: Mus musculus similar to Glyceraldehyde-3-phosphate
           dehydrogenase (GAPDH) (LOC383570), mRNA
          Length = 996

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 484 caatgacaaacttcccattctcg 506
           |||||||||||||||||||||||
Sbjct: 208 caatgacaaacttcccattctcg 186
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>emb|BX248984.11| Mouse DNA sequence from clone RP23-278P12 on chromosome 1, complete
              sequence
          Length = 191884

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 484    caatgacaaacttcccattctcg 506
              |||||||||||||||||||||||
Sbjct: 132868 caatgacaaacttcccattctcg 132890
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>gb|AC131661.4| Mus musculus BAC clone RP23-251N10 from 1, complete sequence
          Length = 211188

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 484    caatgacaaacttcccattctcg 506
              |||||||||||||||||||||||
Sbjct: 148554 caatgacaaacttcccattctcg 148532
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>ref|XR_002955.1| PREDICTED: Mus musculus similar to Glyceraldehyde-3-phosphate
           dehydrogenase (GAPDH) (LOC670400), mRNA
          Length = 1077

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 486 atgacaaacttcccattctcg 506
           |||||||||||||||||||||
Sbjct: 275 atgacaaacttcccattctcg 255
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>ref|XR_002189.1| PREDICTED: Mus musculus similar to Glyceraldehyde-3-phosphate
           dehydrogenase (GAPDH) (LOC629359), mRNA
          Length = 1076

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 486 atgacaaacttcccattctcg 506
           |||||||||||||||||||||
Sbjct: 275 atgacaaacttcccattctcg 255
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>gb|AY594330.1| Mus musculus cytochrome P450 17-alpha hydroxylase/17,20 lyase (Cyp17)
            gene, complete cds
          Length = 16649

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 486  atgacaaacttcccattctcg 506
            |||||||||||||||||||||
Sbjct: 2247 atgacaaacttcccattctcg 2227
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>gb|AC161865.4| Mus musculus chromosome 19, clone RP23-218F7, complete sequence
          Length = 206019

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 486    atgacaaacttcccattctcg 506
              |||||||||||||||||||||
Sbjct: 176089 atgacaaacttcccattctcg 176069
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>emb|AL672180.11| Mouse DNA sequence from clone RP23-419G22 on chromosome X, complete
             sequence
          Length = 212659

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 486   atgacaaacttcccattctcg 506
             |||||||||||||||||||||
Sbjct: 35443 atgacaaacttcccattctcg 35423
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>gb|AC116792.17| Mus musculus chromosome 6, clone RP24-304O23, complete sequence
          Length = 155145

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 408   ctctcagcatcgctgtcttc 427
             ||||||||||||||||||||
Sbjct: 92459 ctctcagcatcgctgtcttc 92478
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>ref|XM_636614.1| Dictyostelium discoideum hypothetical protein (DDB0205855), partial
            mRNA
          Length = 1614

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 196  atcagtttcatatttttgta 215
            ||||||||||||||||||||
Sbjct: 1392 atcagtttcatatttttgta 1411
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>gb|AC122159.30| Mus musculus strain 129/Sv clone ct7-575j15 map 10, complete sequence
          Length = 183491

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    ggggaacattcacttacctc 90
             ||||||||||||||||||||
Sbjct: 30294 ggggaacattcacttacctc 30313
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>gb|AC093349.6| Mus musculus chromosome 19, clone RP23-16C14, complete sequence
          Length = 227274

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 464    ctcatcagcttcatcatccccaat 487
              ||||||| ||||||||||||||||
Sbjct: 218165 ctcatcatcttcatcatccccaat 218142
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>gb|AC144945.4| Mus musculus BAC clone RP23-334D20 from chromosome 19, complete sequence
          Length = 233962

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 464    ctcatcagcttcatcatccccaat 487
              ||||||| ||||||||||||||||
Sbjct: 100787 ctcatcatcttcatcatccccaat 100764
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>ref|XM_707082.1| Candida albicans SC5314 hypothetical protein (CaO19.13956), mRNA
          Length = 1515

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 550 aatctggaggctcgacagatgacg 573
           |||||| |||||||||||||||||
Sbjct: 985 aatctgcaggctcgacagatgacg 962
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>ref|XM_706609.1| Candida albicans SC5314 hypothetical protein (CaO19.6635), mRNA
          Length = 1515

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 550 aatctggaggctcgacagatgacg 573
           |||||| |||||||||||||||||
Sbjct: 985 aatctgcaggctcgacagatgacg 962
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>gb|AC147379.3| Pan troglodytes BAC clone RP43-175C18 from 7, complete sequence
          Length = 219482

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     aaagcctcctcagtacatgc 24
             ||||||||||||||||||||
Sbjct: 26239 aaagcctcctcagtacatgc 26220
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>ref|XR_004465.1| PREDICTED: Mus musculus similar to Glyceraldehyde-3-phosphate
           dehydrogenase (GAPDH) (38 kDa BFA-dependent
           ADP-ribosylation substrate) (BARS-38) (LOC639708), mRNA
          Length = 1134

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 486 atgacaaacttcccattctc 505
           ||||||||||||||||||||
Sbjct: 331 atgacaaacttcccattctc 312
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>gb|AC145990.3| Pan troglodytes BAC clone RP43-168N19 from 7, complete sequence
          Length = 144496

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     aaagcctcctcagtacatgc 24
             ||||||||||||||||||||
Sbjct: 63025 aaagcctcctcagtacatgc 63006
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>gb|AC117232.3| Mus musculus BAC clone RP23-405K2 from chromosome 10, complete sequence
          Length = 204465

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    ggggaacattcacttacctc 90
             ||||||||||||||||||||
Sbjct: 29232 ggggaacattcacttacctc 29213
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>gb|AC133889.9| Mus musculus chromosome 16, clone RP23-380I13, complete sequence
          Length = 235574

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 486    atgacaaacttcccattctc 505
              ||||||||||||||||||||
Sbjct: 141165 atgacaaacttcccattctc 141146
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>gb|AC006354.2| Homo sapiens PAC clone RP5-1091B14 from 7, complete sequence
          Length = 155742

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      aaagcctcctcagtacatgc 24
              ||||||||||||||||||||
Sbjct: 134745 aaagcctcctcagtacatgc 134726
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>gb|AC121125.9| Mus musculus chromosome 5, clone RP23-10F17, complete sequence
          Length = 264205

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    tctatttactacagttttac 44
             ||||||||||||||||||||
Sbjct: 34320 tctatttactacagttttac 34339
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>gb|AC139154.3| Mus musculus chromosome 7 clone RP24-356B8, complete sequence
          Length = 164774

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 486    atgacaaacttcccattctc 505
              ||||||||||||||||||||
Sbjct: 136460 atgacaaacttcccattctc 136441
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>gb|BC035121.1| Homo sapiens vacuolar protein sorting 4 homolog A (S. cerevisiae),
            mRNA (cDNA clone IMAGE:5263362), complete cds
          Length = 2346

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 298  gaagagcagtgtccactgtg 317
            ||||||||||||||||||||
Sbjct: 1808 gaagagcagtgtccactgtg 1789
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>gb|BC047932.1| Homo sapiens vacuolar protein sorting 4 homolog A (S. cerevisiae),
            mRNA (cDNA clone MGC:49835 IMAGE:5753632), complete cds
          Length = 2214

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 298  gaagagcagtgtccactgtg 317
            ||||||||||||||||||||
Sbjct: 1635 gaagagcagtgtccactgtg 1616
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>gb|BC013021.2| Homo sapiens vacuolar protein sorting 4 homolog A (S. cerevisiae),
           mRNA (cDNA clone IMAGE:3350798), containing frame-shift
           errors
          Length = 1453

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 298 gaagagcagtgtccactgtg 317
           ||||||||||||||||||||
Sbjct: 912 gaagagcagtgtccactgtg 893
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>emb|AL513307.10| Human DNA sequence from clone RP11-239E12 on chromosome 1, complete
             sequence
          Length = 168544

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   agatggcagctgtacttcaa 271
             ||||||||||||||||||||
Sbjct: 55639 agatggcagctgtacttcaa 55620
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>ref|NM_013245.2| Homo sapiens vacuolar protein sorting 4 homolog A (S. cerevisiae)
            (VPS4A), mRNA
          Length = 2211

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 298  gaagagcagtgtccactgtg 317
            ||||||||||||||||||||
Sbjct: 1657 gaagagcagtgtccactgtg 1638
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>emb|AL049554.2|HSJ514B11 Human DNA sequence from clone RP3-514B11 on chromosome 6q16.1-21,
             complete sequence
          Length = 100494

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 294   tgttgaagagcagtgtccac 313
             ||||||||||||||||||||
Sbjct: 21157 tgttgaagagcagtgtccac 21138
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>gb|AC144991.1| Homo sapiens chromosome 5 clone XXfos-84059E8, complete sequence
          Length = 39131

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 209  ttttgtatgggttgtgaata 228
            ||||||||||||||||||||
Sbjct: 8118 ttttgtatgggttgtgaata 8137
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>gb|AC144990.1| Homo sapiens chromosome 5 clone XXfos-8092D3, complete sequence
          Length = 40877

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   ttttgtatgggttgtgaata 228
             ||||||||||||||||||||
Sbjct: 11614 ttttgtatgggttgtgaata 11633
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>emb|AL133634.1|HSM801503 Homo sapiens mRNA; cDNA DKFZp434E0418 (from clone DKFZp434E0418);
            partial cds
          Length = 1553

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 298  gaagagcagtgtccactgtg 317
            ||||||||||||||||||||
Sbjct: 1018 gaagagcagtgtccactgtg 999
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>emb|BX571731.5| Zebrafish DNA sequence from clone CH211-195D1 in linkage group 9,
             complete sequence
          Length = 76779

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 197   tcagtttcatatttttgtat 216
             ||||||||||||||||||||
Sbjct: 47108 tcagtttcatatttttgtat 47127
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>gb|BC022677.1| Mus musculus zinc finger CCCH type containing 10, mRNA (cDNA clone
            MGC:31371 IMAGE:4239511), complete cds
          Length = 2102

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   ggggaacattcacttacctc 90
            ||||||||||||||||||||
Sbjct: 1998 ggggaacattcacttacctc 2017
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>emb|CR603988.1| full-length cDNA clone CS0DL008YL14 of B cells (Ramos cell line)
           Cot 25-normalized of Homo sapiens (human)
          Length = 1286

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 298 gaagagcagtgtccactgtg 317
           ||||||||||||||||||||
Sbjct: 798 gaagagcagtgtccactgtg 779
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>gb|AC004673.1| Homo sapiens X BAC GSHB-590J15 (Genome Systems Human BAC library)
             complete sequence
          Length = 236281

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 361   gagccaagtactcctcctca 380
             ||||||||||||||||||||
Sbjct: 77075 gagccaagtactcctcctca 77094
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>gb|AF132747.1| Homo sapiens SKD2 protein mRNA, complete cds
          Length = 2191

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 298  gaagagcagtgtccactgtg 317
            ||||||||||||||||||||
Sbjct: 1666 gaagagcagtgtccactgtg 1647
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>gb|AC158626.6| Mus musculus 6 BAC RP23-4F16 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 240079

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 408    ctctcagcatcgctgtcttc 427
              ||||||||||||||||||||
Sbjct: 160340 ctctcagcatcgctgtcttc 160359
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>gb|AC026464.7| Homo sapiens chromosome 16 clone RP11-343C2, complete sequence
          Length = 190185

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 298   gaagagcagtgtccactgtg 317
             ||||||||||||||||||||
Sbjct: 49644 gaagagcagtgtccactgtg 49625
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>dbj|AK050662.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:C920030F04
            product:hypothetical Glycine-rich region/Zinc finger
            C-x8-C-x5-C-x3-H type containing protein, full insert
            sequence
          Length = 2052

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   ggggaacattcacttacctc 90
            ||||||||||||||||||||
Sbjct: 1992 ggggaacattcacttacctc 2011
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>dbj|AK031312.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:6030405G22 product:hypothetical
            Zinc finger C-x8-C-x5-C-x3-H type containing protein,
            full insert sequence
          Length = 3721

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   ggggaacattcacttacctc 90
            ||||||||||||||||||||
Sbjct: 2028 ggggaacattcacttacctc 2047
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>ref|NM_134003.1| Mus musculus zinc finger CCCH type containing 10 (Zc3h10), mRNA
          Length = 2102

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   ggggaacattcacttacctc 90
            ||||||||||||||||||||
Sbjct: 1998 ggggaacattcacttacctc 2017
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>gb|AF255952.1|AF255952 Homo sapiens vacuolar protein sorting VPS4-1 (VPS4-1) gene, complete
            cds
          Length = 2211

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 298  gaagagcagtgtccactgtg 317
            ||||||||||||||||||||
Sbjct: 1657 gaagagcagtgtccactgtg 1638
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>gb|AC026474.7| Homo sapiens chromosome 16 clone RP11-70O5, complete sequence
          Length = 196220

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 298   gaagagcagtgtccactgtg 317
             ||||||||||||||||||||
Sbjct: 94053 gaagagcagtgtccactgtg 94072
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>gb|AC124861.3| Homo sapiens BAC clone RP11-622A18 from 2, complete sequence
          Length = 153731

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 566   agatgacgagatgactgctt 585
             ||||||||||||||||||||
Sbjct: 52096 agatgacgagatgactgctt 52077
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>gb|AC022368.2|AC022368 Mus musculus strain C57BL6/J clone RP23-192D21, complete sequence
          Length = 207757

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     tctatttactacagttttac 44
              ||||||||||||||||||||
Sbjct: 138480 tctatttactacagttttac 138499
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>gb|AF282903.1| Homo sapiens vacuolar protein sorting factor 4A (VPS4A) gene, complete
             cds
          Length = 17315

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 298   gaagagcagtgtccactgtg 317
             ||||||||||||||||||||
Sbjct: 14726 gaagagcagtgtccactgtg 14707
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>gb|AF495776.1| Ludwigia peploides chloroplast NADH dehydrogenase subunit F-like
           gene, partial sequence
          Length = 1060

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 366 aagtactcctcctcatcaatatccttgt 393
           |||||||||||||  |||||||||||||
Sbjct: 381 aagtactcctcctattcaatatccttgt 408
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>ref|XM_345008.2| PREDICTED: Rattus norvegicus similar to Glyceraldehyde-3-phosphate
           dehydrogenase (GAPDH) (LOC365427), mRNA
          Length = 903

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 486 atgacaaacttcccattctc 505
           ||||||||||||||||||||
Sbjct: 206 atgacaaacttcccattctc 187
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>gb|AC073165.7|AC073165 Homo sapiens chromosome 5 clone RP11-54E9, complete sequence
          Length = 152869

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 209    ttttgtatgggttgtgaata 228
              ||||||||||||||||||||
Sbjct: 104333 ttttgtatgggttgtgaata 104352
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>dbj|AK025850.1| Homo sapiens cDNA: FLJ22197 fis, clone HRC01216, highly similar to
           AF112215 Homo sapiens SKD1 protein mRNA
          Length = 1498

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 298 gaagagcagtgtccactgtg 317
           ||||||||||||||||||||
Sbjct: 961 gaagagcagtgtccactgtg 942
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>dbj|AK000200.1| Homo sapiens cDNA FLJ20193 fis, clone COLF0795
          Length = 1621

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 298  gaagagcagtgtccactgtg 317
            ||||||||||||||||||||
Sbjct: 1089 gaagagcagtgtccactgtg 1070
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>gb|AF112215.1|AF112215 Homo sapiens SKD1 protein mRNA, complete cds
          Length = 2138

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 298  gaagagcagtgtccactgtg 317
            ||||||||||||||||||||
Sbjct: 1612 gaagagcagtgtccactgtg 1593
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>gb|AF159063.1|AF159063 Homo sapiens SKD1-homolog mRNA, complete cds
          Length = 2194

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 298  gaagagcagtgtccactgtg 317
            ||||||||||||||||||||
Sbjct: 1657 gaagagcagtgtccactgtg 1638
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>emb|AL928611.9| Mouse DNA sequence from clone RP23-263O5 on chromosome 2, complete
            sequence
          Length = 199317

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 193  attatcagtttcatattttt 212
            ||||||||||||||||||||
Sbjct: 7050 attatcagtttcatattttt 7069
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>gb|AC122538.4| Mus musculus BAC clone RP24-548J11 from 16, complete sequence
          Length = 209585

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 486   atgacaaacttcccattctc 505
             ||||||||||||||||||||
Sbjct: 81391 atgacaaacttcccattctc 81410
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>gb|AC149062.3| Mus musculus BAC clone RP23-183E20 from 7, complete sequence
          Length = 229956

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 486    atgacaaacttcccattctc 505
              ||||||||||||||||||||
Sbjct: 127009 atgacaaacttcccattctc 127028


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,506,501
Number of Sequences: 3902068
Number of extensions: 4506501
Number of successful extensions: 79983
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79850
Number of HSP's gapped (non-prelim): 125
length of query: 618
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 595
effective length of database: 17,143,297,704
effective search space: 10200262133880
effective search space used: 10200262133880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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