ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags6h22 |
|---|---|
| Clone Library Name | barley_pub |
>GALM_HUMAN (Q96C23) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| (BLOCK25 protein) Length = 342 Score = 137 bits (346), Expect = 2e-32 Identities = 68/153 (44%), Positives = 97/153 (63%), Gaps = 2/153 (1%) Frame = -3 Query: 625 DHSIQIWAKHITPVNENTIPTGEIMSVQDTPFDFTTEHRIGDRINDVP-GGYDHNYVLDS 449 DH + I A PV+E IPTGE+ VQ T FD +G + D G+DHN+ L Sbjct: 191 DHEVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCLKG 250 Query: 448 GDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAVYGKHAGVCLE 272 EK+ A++ ++S R L+++T PG+QFYT N+++G + GK GAVY KH+G CLE Sbjct: 251 SKEKH---FCARVHHAASGRVLEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGFCLE 307 Query: 271 TQGFPNAINQTNFPSVVVQPGAKYKHTMLFEFS 173 TQ +P+A+NQ FP V+++PG +Y HT F+FS Sbjct: 308 TQNWPDAVNQPRFPPVLLRPGEEYDHTTWFKFS 340
>GALM_PIG (Q9GKX6) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 137 bits (344), Expect = 3e-32 Identities = 69/153 (45%), Positives = 96/153 (62%), Gaps = 2/153 (1%) Frame = -3 Query: 625 DHSIQIWAKHITPVNENTIPTGEIMSVQDTPFDFTTEHRIGDRINDVP-GGYDHNYVLDS 449 DH + I A PV+E IPTGEI VQ T FD +G + + G+DHN+ L Sbjct: 191 DHEVTIEADAFLPVDETLIPTGEIAPVQGTAFDLRKPVELGKHLQEFHINGFDHNFCLKR 250 Query: 448 GDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAVYGKHAGVCLE 272 EK + A++ + S R L+++T PG+QFYT N+++G + GK GAVY KH+G CLE Sbjct: 251 SKEK---QFCARVHHAGSGRVLEVYTTQPGIQFYTGNFLDGTLKGKTGAVYPKHSGFCLE 307 Query: 271 TQGFPNAINQTNFPSVVVQPGAKYKHTMLFEFS 173 TQ +PNA+NQ +FP V+++PG +Y HT F FS Sbjct: 308 TQNWPNAVNQPHFPPVLLKPGEEYNHTTWFVFS 340
>GALM_PONPY (Q5R8U1) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 135 bits (340), Expect = 1e-31 Identities = 67/153 (43%), Positives = 96/153 (62%), Gaps = 2/153 (1%) Frame = -3 Query: 625 DHSIQIWAKHITPVNENTIPTGEIMSVQDTPFDFTTEHRIGDRINDVP-GGYDHNYVLDS 449 DH + I A PV+E IPTGE+ VQ T FD +G + D G+DHN+ L Sbjct: 191 DHEVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCLKG 250 Query: 448 GDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAVYGKHAGVCLE 272 EK+ A++ ++S R L+++T PG+QFY N+++G + GK GAVY KH+G CLE Sbjct: 251 SKEKH---FCARVHHAASGRVLEVYTTQPGVQFYMGNFLDGTLKGKNGAVYPKHSGFCLE 307 Query: 271 TQGFPNAINQTNFPSVVVQPGAKYKHTMLFEFS 173 TQ +P+A+NQ FP V+++PG +Y HT F+FS Sbjct: 308 TQNWPDAVNQPRFPPVLLRPGEEYDHTTWFKFS 340
>GALM_BOVIN (Q5EA79) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 135 bits (340), Expect = 1e-31 Identities = 68/153 (44%), Positives = 97/153 (63%), Gaps = 2/153 (1%) Frame = -3 Query: 625 DHSIQIWAKHITPVNENTIPTGEIMSVQDTPFDFTTEHRIGDRINDVP-GGYDHNYVLDS 449 DH + I A PV+E IPTGEI SVQ T FD +G + + G+DHN+ L Sbjct: 191 DHEVTIEADAFLPVDEVLIPTGEIASVQGTAFDLRKPVELGKHLQEFHVNGFDHNFCLKG 250 Query: 448 GDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAVYGKHAGVCLE 272 EK + A++ + S R L+++T PG+QFYT N+++G + GK GA Y KH+G CLE Sbjct: 251 SKEK---RFCARVHHAGSGRVLEVYTTQPGVQFYTGNFLDGTLKGKSGAGYPKHSGFCLE 307 Query: 271 TQGFPNAINQTNFPSVVVQPGAKYKHTMLFEFS 173 TQ +P+A+NQ +FP V+++PG +Y HT F+FS Sbjct: 308 TQSWPDAVNQPHFPPVLLKPGEEYDHTTWFKFS 340
>GALM_MOUSE (Q8K157) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 134 bits (337), Expect = 2e-31 Identities = 66/153 (43%), Positives = 97/153 (63%), Gaps = 2/153 (1%) Frame = -3 Query: 625 DHSIQIWAKHITPVNENTIPTGEIMSVQDTPFDFTTEHRIGDRINDVP-GGYDHNYVLDS 449 DH + I A PV+E IPTG I V+ T FD +G + D G+DHN+ L Sbjct: 191 DHEVTIAADAYLPVDETLIPTGVIAPVEGTAFDLRKPVELGTHLQDYHIHGFDHNFCLKE 250 Query: 448 GDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAVYGKHAGVCLE 272 EK K A+++ ++S R L+++T PG+QFYT N+++G + GK GAVY KH+G+CLE Sbjct: 251 SKEK---KFCARVRHAASGRILEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGLCLE 307 Query: 271 TQGFPNAINQTNFPSVVVQPGAKYKHTMLFEFS 173 TQ +P+++NQ FP +++PG +Y HT F+FS Sbjct: 308 TQNWPDSVNQPQFPPALLRPGEEYNHTTWFKFS 340
>GALM_RAT (Q66HG4) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 130 bits (327), Expect = 3e-30 Identities = 65/153 (42%), Positives = 94/153 (61%), Gaps = 2/153 (1%) Frame = -3 Query: 625 DHSIQIWAKHITPVNENTIPTGEIMSVQDTPFDFTTEHRIGDRINDVP-GGYDHNYVLDS 449 DH + I A PV+E IPTG I V+ T FD +G + G+DHN+ L Sbjct: 191 DHEVTIAADAYLPVDETLIPTGVIAPVEGTAFDLRKPVELGKHLQSYHIHGFDHNFCLKE 250 Query: 448 GDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAVYGKHAGVCLE 272 EK K A++ ++S R L+++T PG+QFYT N+++G + GK G VY KH+G CLE Sbjct: 251 SKEK---KFCARVHHAASGRILEVYTTQPGVQFYTGNFLDGTLKGKSGEVYPKHSGFCLE 307 Query: 271 TQGFPNAINQTNFPSVVVQPGAKYKHTMLFEFS 173 TQ +P+A+NQ FP ++++PG +Y HT F+FS Sbjct: 308 TQNWPDAVNQPQFPPILLRPGEEYNHTTWFKFS 340
>GALM_ACICA (P05149) Aldose 1-epimerase precursor (EC 5.1.3.3) (Mutarotase)| Length = 381 Score = 94.4 bits (233), Expect = 3e-19 Identities = 57/160 (35%), Positives = 84/160 (52%), Gaps = 10/160 (6%) Frame = -3 Query: 625 DHSIQIWAKHITPVNENTIPTGEIMSVQDTPFDFTTEHRIGDRINDVPG---------GY 473 DH +Q+ A I ++N++PTGEI SV TPFDF I + D+ GY Sbjct: 222 DHVVQLNAGRILVTDQNSLPTGEIASVAGTPFDFRMPKAI---VKDIRANNQQLAYGYGY 278 Query: 472 DHNYVLDSGDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAVYG 296 D +V++ + L AA + D S RT+ + T P +Q YTA+++ G I G G +Y Sbjct: 279 DQTWVINQKSQGK-LNLAAIVVDPKSKRTMQVLTTEPSVQMYTADHLLGNIVGANGVLYR 337 Query: 295 KHAGVCLETQGFPNAINQTNFPSVVVQPGAKYKHTMLFEF 176 + + LETQ FP++ NQ FPS + P Y +F+F Sbjct: 338 QADALALETQHFPDSPNQPTFPSTRLNPNQTYNSVTVFKF 377
>GALM_SHIFL (P0A9C4) Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)| Length = 346 Score = 76.3 bits (186), Expect = 7e-14 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 7/159 (4%) Frame = -3 Query: 625 DHSIQIWAKHITPVNENTIPTGEIMSVQDTPFDFTT-----EHRIGDRINDVPGGYDHNY 461 +H +QI A PV+E IP + SV T FDF + + D GYDH + Sbjct: 189 NHKLQILADEYLPVDEGGIPHDGLKSVAGTSFDFRSAKIIASEFLADDDQRKVKGYDHAF 248 Query: 460 VLDSGDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNGITGKGGAVYGKHAGV 281 +L + + +G K AA + + L ++T AP +QFY+ N++ G +G Y G+ Sbjct: 249 LLQA--KGDGKKVAAHVWSADEKLQLKVYTTAPALQFYSGNFLGGTPSRGTEPYADWQGL 306 Query: 280 CLETQGFPNAINQTNF--PSVVVQPGAKYKHTMLFEFSA 170 LE++ P++ N + P ++PG +Y ++F A Sbjct: 307 ALESEFLPDSPNHPEWPQPDCFLRPGEEYSSLTEYQFIA 345
>GALM_ECOLI (P0A9C3) Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)| Length = 346 Score = 76.3 bits (186), Expect = 7e-14 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 7/159 (4%) Frame = -3 Query: 625 DHSIQIWAKHITPVNENTIPTGEIMSVQDTPFDFTT-----EHRIGDRINDVPGGYDHNY 461 +H +QI A PV+E IP + SV T FDF + + D GYDH + Sbjct: 189 NHKLQILADEYLPVDEGGIPHDGLKSVAGTSFDFRSAKIIASEFLADDDQRKVKGYDHAF 248 Query: 460 VLDSGDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNGITGKGGAVYGKHAGV 281 +L + + +G K AA + + L ++T AP +QFY+ N++ G +G Y G+ Sbjct: 249 LLQA--KGDGKKVAAHVWSADEKLQLKVYTTAPALQFYSGNFLGGTPSRGTEPYADWQGL 306 Query: 280 CLETQGFPNAINQTNF--PSVVVQPGAKYKHTMLFEFSA 170 LE++ P++ N + P ++PG +Y ++F A Sbjct: 307 ALESEFLPDSPNHPEWPQPDCFLRPGEEYSSLTEYQFIA 345
>GALM_HAEIN (P31765) Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)| Length = 340 Score = 63.9 bits (154), Expect = 4e-10 Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 8/158 (5%) Frame = -3 Query: 625 DHSIQIWAKHITPVNENTIPTGEIMSVQDTPFDFTTEHRI------GDRINDVPGGYDHN 464 +H++++ A PV+ IP + V +T FDF I GD+ GYDH+ Sbjct: 188 EHTLRLNADFYLPVDNEGIPNSPLKHVVNTSFDFRIAKPIKQDFLQGDQ--QATKGYDHS 245 Query: 463 YVLDSGDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNGITGKGGAVYGKHAG 284 ++++ K K L + +L++ T +Q YT NY+ G + G +Y +G Sbjct: 246 FIVN----KAWQKPCVLLTSPTGDLSLEVRTSQAALQVYTGNYLAGTPTRNGELYADFSG 301 Query: 283 VCLETQGFPNAINQTNFPSV--VVQPGAKYKHTMLFEF 176 + LETQ P+ N + + + + G +Y F+F Sbjct: 302 IALETQCLPDTPNHPEWQNYGGIQKAGGRYYQWTEFKF 339
>GALM_STRTR (P21955) Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)| Length = 348 Score = 56.6 bits (135), Expect = 6e-08 Identities = 33/152 (21%), Positives = 74/152 (48%), Gaps = 3/152 (1%) Frame = -3 Query: 622 HSIQIWAKHITPVNENTIPTGEIMSVQDTPFDFTTEHRIGDRINDVPGGYDHNYVLDSGD 443 H +QI++ + ++ IPTG+ ++V +T +DF + RI + G+D +V+ G Sbjct: 194 HELQIYSDYRLELDSELIPTGQKINVDETNYDFRKTTDLLPRI-EANNGFDDAFVV-GGG 251 Query: 442 EKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNG---ITGKGGAVYGKHAGVCLE 272 + +K A L D S ++++++ G+ +T + + G + + + +E Sbjct: 252 TCDHVKEVAILHDKESGDGIEIFSNRNGLVIFTMDDIEDNIYFARDKGKMAKRREAIAME 311 Query: 271 TQGFPNAINQTNFPSVVVQPGAKYKHTMLFEF 176 Q P+A+N F +++ G + + F++ Sbjct: 312 AQTLPDAVNHKGFGDIILDKGHSVNYEIGFQY 343
>GAL10_KLULA (P09609) GAL10 bifunctional protein [Includes: UDP-glucose| 4-epimerase (EC 5.1.3.2) (Galactowaldenase); Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)] Length = 688 Score = 45.1 bits (105), Expect = 2e-04 Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 9/146 (6%) Frame = -3 Query: 586 VNENTIPTG------EIMSVQDTPFDFTTEHRIGDR--INDVPGGYDHNYVLDSGDEKNG 431 VN +PTG ++ + D+P + T + + D ++ +P D + Sbjct: 553 VNNKLLPTGNLKKYTQVATFNDSPTEITEKEPVLDFCFVSGLPAKLD--------TRSSP 604 Query: 430 LKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNGITGKGGAVYGKHAGVCLETQGFPNA 251 L KL + + +++ T P Q YT +YV+ + K Y AG+C E + +A Sbjct: 605 LTPVFKLSNEDAKLEVEVATTEPTFQVYTGDYVD-VKDK----YENRAGICCEPGRYIDA 659 Query: 250 INQTNFPSVVVQP-GAKYKHTMLFEF 176 +N + S VV P G Y H + + F Sbjct: 660 VNNPEWKSSVVLPAGETYGHKLSYTF 685
>GAL10_SCHPO (Q9HDU3) GAL10 bifunctional protein [Includes: UDP-glucose| 4-epimerase (EC 5.1.3.2) (Galactowaldenase); Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)] Length = 713 Score = 37.0 bits (84), Expect = 0.048 Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 8/136 (5%) Frame = -3 Query: 583 NENTIPTGEIMSVQDTPFDFTTEHRIGDRINDVPGGYDHNYVLDS-------GDEKNGLK 425 +E ++PTG+I+ Q+ D T ++ I+ +D+ +++D K LK Sbjct: 561 SETSLPTGDIVEWQN---DITKPTKLDPNIS-----FDNCFIVDREASKFCLDTRKYSLK 612 Query: 424 HAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNGITGKGGAVYGKHAGVCLETQGFPNAIN 245 + ++ S L + T P Q YT + G + +G C+ET F NA+N Sbjct: 613 NIVEVIHPSVPVKLVVSTTEPAFQLYTGD------GNDICEFQSRSGFCVETGRFINALN 666 Query: 244 QTNF-PSVVVQPGAKY 200 + V+++ G Y Sbjct: 667 NEKWSKQVILRKGEVY 682
>FMT_BUCAI (P57564) Methionyl-tRNA formyltransferase (EC 2.1.2.9)| Length = 314 Score = 31.2 bits (69), Expect = 2.6 Identities = 11/38 (28%), Positives = 19/38 (50%) Frame = -3 Query: 619 SIQIWAKHITPVNENTIPTGEIMSVQDTPFDFTTEHRI 506 +I++W + P+ +N GEI+S T H+I Sbjct: 244 NIKVWQSEVIPITQNNRSVGEIISYNKNGIQINTSHQI 281
>SYR_MYCSM (Q9X5M0) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 550 Score = 30.4 bits (67), Expect = 4.5 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Frame = -3 Query: 562 GEIMSVQDTPFDFTTEHRIGDRINDVPGGYDHNY----VLDSGDEKNGLKHAAKL 410 GE V T HR+ + D+ G Y Y VL GDE+ G H+A+L Sbjct: 471 GEFPRVLKTAASLREPHRVCRYLEDLAGDYHRFYDSCRVLPQGDEEPGDLHSARL 525
>RPOB_BACTN (Q8A469) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1270 Score = 30.4 bits (67), Expect = 4.5 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -3 Query: 460 VLDSGDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYV-NGITGK 314 VL + G+K A + D ++ LD WTD G+ Y Y+ +G TG+ Sbjct: 1100 VLGRAGKTLGVKFATPIFDGATMDDLDQWTDKAGLPRYCKTYLCDGGTGE 1149
>GUX1_PHACH (P13860) Exoglucanase 1 precursor (EC 3.2.1.91) (Exoglucanase I)| (Exocellobiohydrolase I) (1,4-beta-cellobiohydrolase) Length = 516 Score = 30.0 bits (66), Expect = 5.8 Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 1/92 (1%) Frame = -3 Query: 472 DHNYVLDSGDEKNGLKHAAKLKDSSSSRTLDLWTD-APGMQFYTANYVNGITGKGGAVYG 296 D NY G GLK + + L +W D A M + +NY T K + G Sbjct: 354 DTNYFAQHG----GLKQVGEALRTGMVLALSIWDDYAANMLWLDSNYP---TNKDPSTPG 406 Query: 295 KHAGVCLETQGFPNAINQTNFPSVVVQPGAKY 200 G C T G P I + + VV K+ Sbjct: 407 VARGTCATTSGVPAQIEAQSPNAYVVFSNIKF 438
>IRF8_MOUSE (P23611) Interferon regulatory factor 8 (IRF-8) (Interferon| consensus sequence-binding protein) (ICSBP) Length = 424 Score = 30.0 bits (66), Expect = 5.8 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Frame = -2 Query: 320 GQRRSCLREACRSMLGNPGVPQCHQPDQF-PVC 225 GQ + E CR L PG+P+ + PD PVC Sbjct: 217 GQATTTCLEGCRLSLSQPGLPKLYGPDGLEPVC 249
>GR05A_DROME (Q9W497) Gustatory receptor for trehalose (Trehalose receptor)| Length = 444 Score = 29.6 bits (65), Expect = 7.6 Identities = 18/46 (39%), Positives = 23/46 (50%) Frame = +1 Query: 40 SSDHYTFFYFSLVLQLDSFLLVVLFHSTTTAVAAIKLLALSLIMLR 177 SS H +FYFSL+ L V+LF S A L L L+ L+ Sbjct: 334 SSAHAVYFYFSLLFLLSRSTAVLLFVSAINDQAREPLRLLRLVPLK 379
>COFG_HALMA (Q5UXN0) FO synthase subunit 1 (EC 2.5.1.-)| (7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 1) Length = 343 Score = 29.6 bits (65), Expect = 7.6 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = -2 Query: 359 HAVLYRQLCEWHHGQRRSCLREACRSMLGNPGVPQCHQPDQ 237 + ++ QL EW H LREAC L +P + DQ Sbjct: 76 YTAVHDQLAEWGHDSIHEYLREACEIALEEGLLPHANPGDQ 116
>COAT_TYLCA (P36278) Coat protein (CP)| Length = 256 Score = 29.3 bits (64), Expect = 10.0 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +3 Query: 105 RFIPFYNYCSCSH*AAGIISNHAENSNNMVCLYFAPGCT 221 RF YN+C+ +H A NH EN+ + LY A CT Sbjct: 201 RFYKIYNHCTYNHQEAAKYENHTENA---LLLYMA--CT 234 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,716,496 Number of Sequences: 219361 Number of extensions: 2216276 Number of successful extensions: 6344 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 6130 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6319 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5767334219 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
