ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6h21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 121 2e-24
3emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa... 121 2e-24
4gb|AY108011.1| Zea mays PCO081127 mRNA sequence 92 2e-15
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.45
6dbj|AP005505.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.45
7gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 1.8
8emb|BX000440.10| Zebrafish DNA sequence from clone CH211-14L9 in... 42 1.8
9emb|BX539346.8| Zebrafish DNA sequence from clone DKEYP-73G7 in ... 42 1.8
10gb|AC083800.13| Homo sapiens 3q BAC RP11-484M3 (Roswell Park Can... 42 1.8
11gb|AC096641.2| Homo sapiens chromosome 1 clone RP11-361K17, comp... 42 1.8
12gb|AC098617.5| Homo sapiens BAC clone RP11-56I1 from 2, complete... 42 1.8
13gb|CP000208.1| Drosophila melanogaster genomic scaffold 21100002... 42 1.8
14gb|AY495647.1| Cochliobolus heterostrophus polyketide synthase (... 40 7.0
15emb|CR762406.10| Zebrafish DNA sequence from clone DKEY-13D23 in... 40 7.0
16emb|Z66562.1|CEF42E11 Caenorhabditis elegans Cosmid F42E11, comp... 40 7.0
17gb|AC123869.4| Mus musculus BAC clone RP23-245M16 from 12, compl... 40 7.0
18emb|AL831732.18| Human DNA sequence from clone RP11-396L10 on ch... 40 7.0
19emb|AL583854.7| Human DNA sequence from clone RP11-570K4 on chro... 40 7.0
20emb|AL513187.6| Human DNA sequence from clone RP11-436H6 on chro... 40 7.0
21emb|AL354653.26| Human DNA sequence from clone RP11-326A14 on ch... 40 7.0
22emb|AL121936.17|HSBK14H9 Human DNA sequence from clone CTA-14H9 ... 40 7.0
23emb|AL645804.8| Zebrafish DNA sequence from clone BUSM1-25N23 Co... 40 7.0
24emb|CR391966.8| Zebrafish DNA sequence from clone CH211-269M15 i... 40 7.0
25emb|BX294128.19| Zebrafish DNA sequence from clone DKEYP-35F12 i... 40 7.0
26emb|BX897696.12| Zebrafish DNA sequence from clone DKEY-111B14 i... 40 7.0
27gb|AY968672.1| Campanulotes bidentatus compar mitochondrion, com... 40 7.0
28gb|AC104021.5| Homo sapiens chromosome 8, clone RP11-378A12, com... 40 7.0
29gb|AC099793.2| Homo sapiens chromosome 1 clone RP11-565N2, compl... 40 7.0
30gb|AC104419.3| Homo sapiens chromosome 8, clone RP11-134O21, com... 40 7.0
31emb|BX890539.20| Zebrafish DNA sequence from clone CH211-241B2, ... 40 7.0
32emb|BX248236.16| Zebrafish DNA sequence from clone CH211-207B24 ... 40 7.0
33gb|AC148867.3| Monodelphis domestica clone VMRC6-379O2, complete... 40 7.0
34emb|BX119923.12| Zebrafish DNA sequence from clone CH211-203B17 ... 40 7.0
35dbj|AK108844.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.0
36emb|BX005041.11| Zebrafish DNA sequence from clone DKEY-38L12 in... 40 7.0
37emb|BX247899.17| Zebrafish DNA sequence from clone CH211-229B6 i... 40 7.0
38gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1... 40 7.0
39emb|CR925877.9| Zebrafish DNA sequence from clone DKEY-71B4 in l... 40 7.0
40gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold 40 7.0
41emb|AL049336.1|HSM800121 Homo sapiens mRNA; cDNA DKFZp564O186 (f... 40 7.0 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  121 bits (61), Expect = 2e-24
 Identities = 145/173 (83%)
 Strand = Plus / Minus

                                                                            
Query: 332      gcctccaatctccctgcaagcagcttcactacatacttccccagtatgtcagcctcaagg 391
                |||||||||||||| || || |||||| | || ||||| || |||||||| ||||| |||
Sbjct: 21671824 gcctccaatctcccggcgaggagcttctcgacgtacttgccgagtatgtcggcctcgagg 21671765

                                                                            
Query: 392      ttcaccttatccccaaccttcttcctgggcagcacaacattgtcctgcgtgtagcgcaca 451
                |||||||| ||||||||||||||  | |||||||| |  |||||||| ||||| | ||| 
Sbjct: 21671764 ttcaccttgtccccaaccttcttgttcggcagcacgatgttgtcctgggtgtacctcacc 21671705

                                                                     
Query: 452      agcatgaagtcgaaccacccggcctcctcgttcacattgacaacggtgaggct 504
                ||||||||||||||||||||| | |||||||  || || || |||||||||||
Sbjct: 21671704 agcatgaagtcgaaccacccgccttcctcgtcgacgttcaccacggtgaggct 21671652
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  121 bits (61), Expect = 2e-24
 Identities = 145/173 (83%)
 Strand = Plus / Minus

                                                                            
Query: 332      gcctccaatctccctgcaagcagcttcactacatacttccccagtatgtcagcctcaagg 391
                |||||||||||||| || || |||||| | || ||||| || |||||||| ||||| |||
Sbjct: 21600169 gcctccaatctcccggcgaggagcttctcgacgtacttgccgagtatgtcggcctcgagg 21600110

                                                                            
Query: 392      ttcaccttatccccaaccttcttcctgggcagcacaacattgtcctgcgtgtagcgcaca 451
                |||||||| ||||||||||||||  | |||||||| |  |||||||| ||||| | ||| 
Sbjct: 21600109 ttcaccttgtccccaaccttcttgttcggcagcacgatgttgtcctgggtgtacctcacc 21600050

                                                                     
Query: 452      agcatgaagtcgaaccacccggcctcctcgttcacattgacaacggtgaggct 504
                ||||||||||||||||||||| | |||||||  || || || |||||||||||
Sbjct: 21600049 agcatgaagtcgaaccacccgccttcctcgtcgacgttcaccacggtgaggct 21599997
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>emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa0024C08 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 186030

 Score =  121 bits (61), Expect = 2e-24
 Identities = 145/173 (83%)
 Strand = Plus / Plus

                                                                          
Query: 332    gcctccaatctccctgcaagcagcttcactacatacttccccagtatgtcagcctcaagg 391
              |||||||||||||| || || |||||| | || ||||| || |||||||| ||||| |||
Sbjct: 140727 gcctccaatctcccggcgaggagcttctcgacgtacttgccgagtatgtcggcctcgagg 140786

                                                                          
Query: 392    ttcaccttatccccaaccttcttcctgggcagcacaacattgtcctgcgtgtagcgcaca 451
              |||||||| ||||||||||||||  | |||||||| |  |||||||| ||||| | ||| 
Sbjct: 140787 ttcaccttgtccccaaccttcttgttcggcagcacgatgttgtcctgggtgtacctcacc 140846

                                                                   
Query: 452    agcatgaagtcgaaccacccggcctcctcgttcacattgacaacggtgaggct 504
              ||||||||||||||||||||| | |||||||  || || || |||||||||||
Sbjct: 140847 agcatgaagtcgaaccacccgccttcctcgtcgacgttcaccacggtgaggct 140899
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>gb|AY108011.1| Zea mays PCO081127 mRNA sequence
          Length = 697

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 123/149 (82%)
 Strand = Plus / Minus

                                                                       
Query: 365 tacttccccagtatgtcagcctcaaggttcaccttatccccaaccttcttcctgggcagc 424
           |||||||||||||| || ||||| ||||||||||| || || ||||||||  | ||||||
Sbjct: 435 tacttccccagtatatccgcctccaggttcaccttgtctccgaccttcttggtcggcagc 376

                                                                       
Query: 425 acaacattgtcctgcgtgtagcgcacaagcatgaagtcgaaccacccggcctcctcgttc 484
           || |  |||||||||||||| |  || ||||||||||| ||||| ||| | || |||| |
Sbjct: 375 acgatgttgtcctgcgtgtacctgacgagcatgaagtcaaaccagccgccntcgtcgtcc 316

                                        
Query: 485 acattgacaacggtgaggctggttccgtc 513
           ||| ||||||| |||||||| || |||||
Sbjct: 315 acactgacaacagtgaggctagtgccgtc 287
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 219     tactgcaaaatgcattattattattg 244
               |||| |||||||||||||||||||||
Sbjct: 5319563 tacttcaaaatgcattattattattg 5319538
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>dbj|AP005505.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0610E02
          Length = 135816

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 219    tactgcaaaatgcattattattattg 244
              |||| |||||||||||||||||||||
Sbjct: 111151 tacttcaaaatgcattattattattg 111126
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>gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 11, complete
              sequence
          Length = 1019846

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 394    caccttatccccaaccttctt 414
              |||||||||||||||||||||
Sbjct: 959029 caccttatccccaaccttctt 959049
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>emb|BX000440.10| Zebrafish DNA sequence from clone CH211-14L9 in linkage group 16,
             complete sequence
          Length = 162906

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 225   aaaatgcattattattattgataaa 249
             ||||||||||||||||||| |||||
Sbjct: 93214 aaaatgcattattattattaataaa 93238
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>emb|BX539346.8| Zebrafish DNA sequence from clone DKEYP-73G7 in linkage group 23,
              complete sequence
          Length = 171486

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 232    attattattattgataaacaa 252
              |||||||||||||||||||||
Sbjct: 101054 attattattattgataaacaa 101034
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>gb|AC083800.13| Homo sapiens 3q BAC RP11-484M3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 181395

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 235   attattattgataaacaagaa 255
             |||||||||||||||||||||
Sbjct: 52699 attattattgataaacaagaa 52679
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>gb|AC096641.2| Homo sapiens chromosome 1 clone RP11-361K17, complete sequence
          Length = 185148

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 161    atggaaacaggcagtggcatg 181
              |||||||||||||||||||||
Sbjct: 146462 atggaaacaggcagtggcatg 146482
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>gb|AC098617.5| Homo sapiens BAC clone RP11-56I1 from 2, complete sequence
          Length = 142812

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 232    attattattattgataaacaa 252
              |||||||||||||||||||||
Sbjct: 117604 attattattattgataaacaa 117584
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>gb|CP000208.1| Drosophila melanogaster genomic scaffold 211000022280732
          Length = 94131

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 219   tactgcaaaatgcattattattattgata 247
             ||||||||||| ||||||||||| |||||
Sbjct: 22562 tactgcaaaattcattattattaatgata 22590
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>gb|AY495647.1| Cochliobolus heterostrophus polyketide synthase (PKS6) gene, partial
            cds
          Length = 9917

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 393  tcaccttatccccaaccttc 412
            ||||||||||||||||||||
Sbjct: 6947 tcaccttatccccaaccttc 6928
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>emb|CR762406.10| Zebrafish DNA sequence from clone DKEY-13D23 in linkage group 1, complete
              sequence
          Length = 144021

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 221    ctgcaaaatgcattattattattg 244
              ||||||||| ||||||||||||||
Sbjct: 127211 ctgcaaaatccattattattattg 127188
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>emb|Z66562.1|CEF42E11 Caenorhabditis elegans Cosmid F42E11, complete sequence
          Length = 30382

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 224  caaaatgcattattattattgataaaca 251
            |||||||||||||||| | |||||||||
Sbjct: 4974 caaaatgcattattatcactgataaaca 5001
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>gb|AC123869.4| Mus musculus BAC clone RP23-245M16 from 12, complete sequence
          Length = 167795

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 225   aaaatgcattattattattg 244
             ||||||||||||||||||||
Sbjct: 62546 aaaatgcattattattattg 62565
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>emb|AL831732.18| Human DNA sequence from clone RP11-396L10 on chromosome 1, complete
             sequence
          Length = 38529

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 225   aaaatgcattattattattg 244
             ||||||||||||||||||||
Sbjct: 26637 aaaatgcattattattattg 26656
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>emb|AL583854.7| Human DNA sequence from clone RP11-570K4 on chromosome 6 Contains part of
              a novel gene, complete sequence
          Length = 135953

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 232    attattattattgataaaca 251
              ||||||||||||||||||||
Sbjct: 122675 attattattattgataaaca 122694
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>emb|AL513187.6| Human DNA sequence from clone RP11-436H6 on chromosome 1 Contains part
             of the NTNG1 gene for netrin G1, complete sequence
          Length = 122032

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   acatggaaacaggcagtggc 178
             ||||||||||||||||||||
Sbjct: 44824 acatggaaacaggcagtggc 44843
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>emb|AL354653.26| Human DNA sequence from clone RP11-326A14 on chromosome Xq13.3-21.2
             Contains the 3' end of the RPS6KA6 gene for ribosomal
             protein S6 kinase, complete sequence
          Length = 173760

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 156   tctacatggaaacaggcagtggca 179
             ||||| ||||||||||||||||||
Sbjct: 95254 tctacttggaaacaggcagtggca 95277
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>emb|AL121936.17|HSBK14H9 Human DNA sequence from clone CTA-14H9 on chromosome 6 Contains the 3'
             end of the BTN2A1 gene encoding butyrophilin 2A, the
             BTN1A1 gene encoding butyrophilin 1A,  part of a novel
             gene, the HMG17L3 gene encoding two variants of the
             high-mobility group (nonhistone chromosomal) protein
             17-like 3, 2 CpG islands, ESTs, STSs and GSSs, complete
             sequence
          Length = 122979

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   ttgataaacaagaatacact 261
             ||||||||||||||||||||
Sbjct: 64486 ttgataaacaagaatacact 64467
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>emb|AL645804.8| Zebrafish DNA sequence from clone BUSM1-25N23 Contains the 3' part of a
             novel gene similar to CBL (Cas-Br-M (murine) ecotropic
             retroviral transforming sequence), the 3' part of the
             alcam gene for activated leukocyte cell adhesion molecule
             and a putative novel gene, complete sequence
          Length = 119087

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 232   attattattattgataaaca 251
             ||||||||||||||||||||
Sbjct: 21308 attattattattgataaaca 21327
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>emb|CR391966.8| Zebrafish DNA sequence from clone CH211-269M15 in linkage group 8,
             complete sequence
          Length = 105854

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 232   attattattattgataaaca 251
             ||||||||||||||||||||
Sbjct: 40918 attattattattgataaaca 40899
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>emb|BX294128.19| Zebrafish DNA sequence from clone DKEYP-35F12 in linkage group 10,
             complete sequence
          Length = 160042

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   caaaatgcattattattatt 243
             ||||||||||||||||||||
Sbjct: 37319 caaaatgcattattattatt 37338
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>emb|BX897696.12| Zebrafish DNA sequence from clone DKEY-111B14 in linkage group 20,
             complete sequence
          Length = 175787

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   caaaatgcattattattatt 243
             ||||||||||||||||||||
Sbjct: 71434 caaaatgcattattattatt 71415
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>gb|AY968672.1| Campanulotes bidentatus compar mitochondrion, complete genome
          Length = 14804

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 234 tattattattgataaacaagaata 257
           ||||| ||||||||||||||||||
Sbjct: 519 tattactattgataaacaagaata 496
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>gb|AC104021.5| Homo sapiens chromosome 8, clone RP11-378A12, complete sequence
          Length = 135998

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    aaatgctggcaatcatgtga 62
             ||||||||||||||||||||
Sbjct: 43694 aaatgctggcaatcatgtga 43675
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>gb|AC099793.2| Homo sapiens chromosome 1 clone RP11-565N2, complete sequence
          Length = 169841

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   aacaggcacagctcaagaag 311
             ||||||||||||||||||||
Sbjct: 16318 aacaggcacagctcaagaag 16299
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>gb|AC104419.3| Homo sapiens chromosome 8, clone RP11-134O21, complete sequence
          Length = 164781

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     aaatgctggcaatcatgtga 62
              ||||||||||||||||||||
Sbjct: 137259 aaatgctggcaatcatgtga 137240
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>emb|BX890539.20| Zebrafish DNA sequence from clone CH211-241B2, complete sequence
          Length = 164402

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   caaaatgcattattattatt 243
             ||||||||||||||||||||
Sbjct: 92639 caaaatgcattattattatt 92658
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>emb|BX248236.16| Zebrafish DNA sequence from clone CH211-207B24 in linkage group 3,
             complete sequence
          Length = 228572

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 225   aaaatgcattattattattg 244
             ||||||||||||||||||||
Sbjct: 45813 aaaatgcattattattattg 45832
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>gb|AC148867.3| Monodelphis domestica clone VMRC6-379O2, complete sequence
          Length = 162030

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    atttgctttgggttacacag 106
             ||||||||||||||||||||
Sbjct: 95693 atttgctttgggttacacag 95674
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>emb|BX119923.12| Zebrafish DNA sequence from clone CH211-203B17 in linkage group 23,
             complete sequence
          Length = 159232

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 225   aaaatgcattattattattg 244
             ||||||||||||||||||||
Sbjct: 26527 aaaatgcattattattattg 26546
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>dbj|AK108844.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-151-H12, full
           insert sequence
          Length = 1421

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 142 gaatcgctacagcttctaca 161
           ||||||||||||||||||||
Sbjct: 169 gaatcgctacagcttctaca 188
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>emb|BX005041.11| Zebrafish DNA sequence from clone DKEY-38L12 in linkage group 18,
              complete sequence
          Length = 190853

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 224    caaaatgcattattattatt 243
              ||||||||||||||||||||
Sbjct: 144843 caaaatgcattattattatt 144862
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>emb|BX247899.17| Zebrafish DNA sequence from clone CH211-229B6 in linkage group 19,
              complete sequence
          Length = 150160

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 224    caaaatgcattattattatt 243
              ||||||||||||||||||||
Sbjct: 135143 caaaatgcattattattatt 135162
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>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome
          Length = 1751080

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 202     aaaaaagcttcactcactac 221
               ||||||||||||||||||||
Sbjct: 1115981 aaaaaagcttcactcactac 1116000
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>emb|CR925877.9| Zebrafish DNA sequence from clone DKEY-71B4 in linkage group 1,
             complete sequence
          Length = 73246

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 407   accttcttcctgggcagcac 426
             ||||||||||||||||||||
Sbjct: 30344 accttcttcctgggcagcac 30363
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>gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold
          Length = 1833844

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     atttgctttgggttacacag 106
              ||||||||||||||||||||
Sbjct: 551654 atttgctttgggttacacag 551635
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>emb|AL049336.1|HSM800121 Homo sapiens mRNA; cDNA DKFZp564O186 (from clone DKFZp564O186)
          Length = 352

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 242 ttgataaacaagaatacact 261
           ||||||||||||||||||||
Sbjct: 61  ttgataaacaagaatacact 42


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,903,260
Number of Sequences: 3902068
Number of extensions: 5903260
Number of successful extensions: 108092
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107881
Number of HSP's gapped (non-prelim): 211
length of query: 517
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 494
effective length of database: 17,143,297,704
effective search space: 8468789065776
effective search space used: 8468789065776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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