ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags6h18 |
|---|---|
| Clone Library Name | barley_pub |
>YKT61_ARATH (Q9ZRD6) VAMP-like protein YKT61 (AtYKT61) (Geranylgeranylated| protein 1) (AtGP1) Length = 199 Score = 130 bits (328), Expect = 2e-30 Identities = 65/74 (87%), Positives = 70/74 (94%) Frame = -2 Query: 558 DALTKFQDPAEADKLTKIQRDLDETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMF 379 +AL KFQDPAEADKL KIQR+LDETKIILHKTI++VL RGE+LDSLVEKSSDLS ASQMF Sbjct: 126 EALNKFQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSMASQMF 185 Query: 378 YKQAKKTNSCCTIL 337 YKQAKKTNSCCTIL Sbjct: 186 YKQAKKTNSCCTIL 199
>YKT62_ARATH (Q9LVM9) VAMP-like protein YKT62 (AtYKT62) (ATGP1-like protein)| Length = 199 Score = 122 bits (306), Expect = 7e-28 Identities = 60/74 (81%), Positives = 68/74 (91%) Frame = -2 Query: 558 DALTKFQDPAEADKLTKIQRDLDETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMF 379 +A KF+DPAEADKL KIQR+LDETKIILHKTI+ VL RGE+LDSLVEKSS+LS AS+MF Sbjct: 126 EASDKFRDPAEADKLLKIQRELDETKIILHKTIDGVLARGEKLDSLVEKSSELSLASKMF 185 Query: 378 YKQAKKTNSCCTIL 337 YKQAKKTNSCCT+L Sbjct: 186 YKQAKKTNSCCTLL 199
>YKT6_CANGA (Q6FW27) Synaptobrevin homolog YKT6| Length = 205 Score = 114 bits (286), Expect = 1e-25 Identities = 51/72 (70%), Positives = 67/72 (93%) Frame = -2 Query: 552 LTKFQDPAEADKLTKIQRDLDETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMFYK 373 ++K+QDPA+AD + K+Q++LDETKI+LHKTIENVLQRGE+LD+LV+KS L+A+S+MFYK Sbjct: 134 ISKYQDPAQADAIMKVQQELDETKIVLHKTIENVLQRGEKLDNLVDKSESLTASSKMFYK 193 Query: 372 QAKKTNSCCTIL 337 QAKKTNSCC I+ Sbjct: 194 QAKKTNSCCIIM 205
>YKT6_KLULA (Q6CSA2) Synaptobrevin homolog YKT6| Length = 200 Score = 112 bits (280), Expect = 7e-25 Identities = 50/72 (69%), Positives = 65/72 (90%) Frame = -2 Query: 552 LTKFQDPAEADKLTKIQRDLDETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMFYK 373 + K+QDP++AD + ++Q++LDETKI LHKTIENVLQRGE+LD+LV+KS LSAAS+MFYK Sbjct: 129 IAKYQDPSQADAIMRVQQELDETKITLHKTIENVLQRGEKLDNLVDKSESLSAASRMFYK 188 Query: 372 QAKKTNSCCTIL 337 QAKKTNSCC ++ Sbjct: 189 QAKKTNSCCIVM 200
>YKT6_ASHGO (Q757A4) Synaptobrevin homolog YKT6| Length = 200 Score = 112 bits (280), Expect = 7e-25 Identities = 50/72 (69%), Positives = 66/72 (91%) Frame = -2 Query: 552 LTKFQDPAEADKLTKIQRDLDETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMFYK 373 L K+QDP++AD + ++Q++LDETKI+LHKTIE+VLQRGE+LD+LV+KS LSA+S+MFYK Sbjct: 129 LAKYQDPSQADSIMRVQQELDETKIVLHKTIESVLQRGEKLDNLVDKSESLSASSRMFYK 188 Query: 372 QAKKTNSCCTIL 337 QAKKTNSCC I+ Sbjct: 189 QAKKTNSCCLIM 200
>YKT6_YEAST (P36015) Synaptobrevin homolog YKT6| Length = 200 Score = 112 bits (279), Expect = 9e-25 Identities = 49/72 (68%), Positives = 67/72 (93%) Frame = -2 Query: 552 LTKFQDPAEADKLTKIQRDLDETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMFYK 373 ++K+QDP++AD + K+Q++LDETKI+LHKTIENVLQRGE+LD+LV+KS L+A+S+MFYK Sbjct: 129 ISKYQDPSQADAIMKVQQELDETKIVLHKTIENVLQRGEKLDNLVDKSESLTASSKMFYK 188 Query: 372 QAKKTNSCCTIL 337 QAKK+NSCC I+ Sbjct: 189 QAKKSNSCCIIM 200
>YKT6_DEBHA (Q6BSL0) Synaptobrevin homolog YKT6| Length = 200 Score = 111 bits (278), Expect = 1e-24 Identities = 50/72 (69%), Positives = 66/72 (91%) Frame = -2 Query: 552 LTKFQDPAEADKLTKIQRDLDETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMFYK 373 + K+QDP++AD + K+Q++LDETKI+LHKTIE+VLQRGE+LDSLV+KS LS++S+MFYK Sbjct: 129 IKKYQDPSQADSIMKVQQELDETKIVLHKTIESVLQRGEKLDSLVDKSEALSSSSRMFYK 188 Query: 372 QAKKTNSCCTIL 337 QAKKTNSCC I+ Sbjct: 189 QAKKTNSCCIIM 200
>YKT6_YARLI (Q6C537) Synaptobrevin homolog YKT6| Length = 200 Score = 102 bits (253), Expect = 9e-22 Identities = 45/74 (60%), Positives = 64/74 (86%) Frame = -2 Query: 558 DALTKFQDPAEADKLTKIQRDLDETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMF 379 D + ++QDP +AD + ++Q++LDETKI+LHKTIE+VL RGERLD+LV+KS LS +S++F Sbjct: 127 DYVKRYQDPHQADAIMRVQQELDETKIVLHKTIESVLARGERLDTLVDKSEALSQSSKIF 186 Query: 378 YKQAKKTNSCCTIL 337 +KQAKKTNSCC ++ Sbjct: 187 FKQAKKTNSCCILM 200
>YKT6_SCHPO (O60073) Synaptobrevin homolog ykt6| Length = 197 Score = 97.8 bits (242), Expect = 2e-20 Identities = 43/71 (60%), Positives = 59/71 (83%) Frame = -2 Query: 552 LTKFQDPAEADKLTKIQRDLDETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMFYK 373 L+K+QDP +AD + ++Q++LDETK +LHKTIE+VL RGE+LD L+++S +LS S+MFYK Sbjct: 126 LSKYQDPKQADTIMRVQQELDETKDVLHKTIESVLARGEKLDDLIQRSDNLSTQSRMFYK 185 Query: 372 QAKKTNSCCTI 340 AKK NSCC I Sbjct: 186 SAKKQNSCCII 196
>VA712_ARATH (Q9SIQ9) Vesicle-associated membrane protein 712 (AtVAMP712)| Length = 219 Score = 47.0 bits (110), Expect = 4e-05 Identities = 18/64 (28%), Positives = 44/64 (68%) Frame = -2 Query: 543 FQDPAEADKLTKIQRDLDETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMFYKQAK 364 + + AD +++I+ ++++ + ++ + I+N+L RGERL+ LV+K++++ + F KQ + Sbjct: 118 YSNDPNADTISRIKGEMNQVRDVMIENIDNILDRGERLELLVDKTANMQGNTFRFRKQTR 177 Query: 363 KTNS 352 + N+ Sbjct: 178 RFNN 181
>VA711_ARATH (O49377) Vesicle-associated membrane protein 711 (AtVAMP711)| (v-SNARE synaptobrevin 7C) (AtVAMP7C) Length = 219 Score = 45.8 bits (107), Expect = 8e-05 Identities = 19/64 (29%), Positives = 43/64 (67%) Frame = -2 Query: 543 FQDPAEADKLTKIQRDLDETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMFYKQAK 364 + + AD++ +I+ ++++ + ++ + I+ VL RGERL+ LV+K++++ + F KQA+ Sbjct: 118 YSNDPNADRINRIKGEMNQVRGVMIENIDKVLDRGERLELLVDKTANMQGNTFRFRKQAR 177 Query: 363 KTNS 352 + S Sbjct: 178 RFRS 181
>VA713_ARATH (Q9LFP1) Vesicle-associated membrane protein 713 (AtVAMP713)| Length = 221 Score = 45.1 bits (105), Expect = 1e-04 Identities = 18/61 (29%), Positives = 41/61 (67%) Frame = -2 Query: 543 FQDPAEADKLTKIQRDLDETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMFYKQAK 364 + + AD++++I+ ++ + + ++ + I+ VL RGERL+ LV+K+ ++ + F KQA+ Sbjct: 119 YSNDPNADRMSRIKGEMSQVRNVMIENIDKVLDRGERLELLVDKTENMQGNTFRFRKQAR 178 Query: 363 K 361 + Sbjct: 179 R 179
>SEC22_SCHPO (Q9Y7L0) Protein transport protein sec22| Length = 209 Score = 43.9 bits (102), Expect = 3e-04 Identities = 20/63 (31%), Positives = 36/63 (57%) Frame = -2 Query: 543 FQDPAEADKLTKIQRDLDETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMFYKQAK 364 + P D L K+ +L + ++ K IE++L RG+ L+ + + SSDL +S + K A+ Sbjct: 119 YNTPRANDNLDKLNTELKDVTRVMTKNIEDLLYRGDSLEKMADLSSDLRYSSAKYKKAAR 178 Query: 363 KTN 355 + N Sbjct: 179 RVN 181
>SYB1_SCHPO (Q92356) Synaptobrevin homolog 1| Length = 121 Score = 43.9 bits (102), Expect = 3e-04 Identities = 21/53 (39%), Positives = 35/53 (66%) Frame = -2 Query: 519 KLTKIQRDLDETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMFYKQAKK 361 K IQ+ +D+T I+ + I V +RGERLDSL +K+ +L+ ++Q F + A + Sbjct: 31 KTAAIQQQIDDTVGIMRENISKVSERGERLDSLQDKTDNLAVSAQGFRRGANR 83
>VAMP4_MOUSE (O70480) Vesicle-associated membrane protein 4 (VAMP-4)| Length = 141 Score = 43.5 bits (101), Expect = 4e-04 Identities = 20/54 (37%), Positives = 33/54 (61%) Frame = -2 Query: 522 DKLTKIQRDLDETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMFYKQAKK 361 DK+ +Q +DE ++ + I V++RGERLD L +KS LS + F ++K+ Sbjct: 51 DKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQ 104
>VAMP4_HUMAN (O75379) Vesicle-associated membrane protein 4 (VAMP-4)| Length = 141 Score = 43.5 bits (101), Expect = 4e-04 Identities = 20/54 (37%), Positives = 33/54 (61%) Frame = -2 Query: 522 DKLTKIQRDLDETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMFYKQAKK 361 DK+ +Q +DE ++ + I V++RGERLD L +KS LS + F ++K+ Sbjct: 51 DKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQ 104
>SNB5_CAEEL (P34351) Synaptobrevin-like protein 5| Length = 102 Score = 42.0 bits (97), Expect = 0.001 Identities = 18/53 (33%), Positives = 34/53 (64%) Frame = -2 Query: 519 KLTKIQRDLDETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMFYKQAKK 361 K+ + +R+LD K I+ + ++ +++R +LD LVE++ L AS ++ K A K Sbjct: 17 KIMRTRRELDSVKAIMKENVQKIMERQGKLDDLVERAQRLEEASDVYVKCAVK 69
>SNC2_YEAST (P33328) Synaptobrevin homolog 2| Length = 115 Score = 40.4 bits (93), Expect = 0.003 Identities = 18/59 (30%), Positives = 37/59 (62%) Frame = -2 Query: 537 DPAEADKLTKIQRDLDETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMFYKQAKK 361 +P +K +++++D+T I+ I V +RGERL S+ +K+ +L+ ++Q F + A + Sbjct: 21 NPNSQNKTAALRQEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAISAQGFKRGANR 79
>SYBL1_PONPY (Q5RF94) Synaptobrevin-like protein 1| Length = 219 Score = 40.0 bits (92), Expect = 0.004 Identities = 20/48 (41%), Positives = 32/48 (66%) Frame = -2 Query: 522 DKLTKIQRDLDETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMF 379 DK+ + Q +DE K I+ + I+ V QRGERL+ L++K+ +L +S F Sbjct: 123 DKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTF 170
>SYBL1_HUMAN (P51809) Synaptobrevin-like protein 1 (Tetanus insensitive VAMP)| (Ti-VAMP) (Ti-VAMP/VAMP7) Length = 219 Score = 40.0 bits (92), Expect = 0.004 Identities = 20/48 (41%), Positives = 32/48 (66%) Frame = -2 Query: 522 DKLTKIQRDLDETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMF 379 DK+ + Q +DE K I+ + I+ V QRGERL+ L++K+ +L +S F Sbjct: 123 DKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTF 170
>SNC1_YEAST (P31109) Synaptobrevin homolog 1| Length = 117 Score = 39.7 bits (91), Expect = 0.006 Identities = 18/60 (30%), Positives = 36/60 (60%) Frame = -2 Query: 540 QDPAEADKLTKIQRDLDETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMFYKQAKK 361 Q+ + ++Q ++D+T I+ I V +RGERL S+ +K+ +L+ ++Q F + A + Sbjct: 21 QNVQSKSRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANR 80
>SC22B_PONPY (Q5RAI9) Vesicle trafficking protein SEC22b (SEC22 vesicle| trafficking protein-like 1) Length = 214 Score = 39.3 bits (90), Expect = 0.008 Identities = 21/54 (38%), Positives = 33/54 (61%) Frame = -2 Query: 516 LTKIQRDLDETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMFYKQAKKTN 355 L I +L + + I+ IE VLQRGE L +L K+++LS+ S+ + + AK N Sbjct: 134 LGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLN 187
>SC22B_MOUSE (O08547) Vesicle trafficking protein SEC22b (SEC22 vesicle| trafficking protein-like 1) Length = 214 Score = 39.3 bits (90), Expect = 0.008 Identities = 21/54 (38%), Positives = 33/54 (61%) Frame = -2 Query: 516 LTKIQRDLDETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMFYKQAKKTN 355 L I +L + + I+ IE VLQRGE L +L K+++LS+ S+ + + AK N Sbjct: 134 LGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLN 187
>SC22B_HUMAN (O75396) Vesicle trafficking protein SEC22b (SEC22 vesicle| trafficking protein-like 1) Length = 214 Score = 39.3 bits (90), Expect = 0.008 Identities = 21/54 (38%), Positives = 33/54 (61%) Frame = -2 Query: 516 LTKIQRDLDETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMFYKQAKKTN 355 L I +L + + I+ IE VLQRGE L +L K+++LS+ S+ + + AK N Sbjct: 134 LGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLN 187
>SEC22_ARATH (Q94AU2) 25.3 kDa vesicle transport protein (AtSEC22)| Length = 218 Score = 39.3 bits (90), Expect = 0.008 Identities = 20/63 (31%), Positives = 36/63 (57%) Frame = -2 Query: 543 FQDPAEADKLTKIQRDLDETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMFYKQAK 364 +QD + K+ +L E I+ + ++ VL GE+LD + E SS L++ S+++ +AK Sbjct: 127 YQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAK 186 Query: 363 KTN 355 N Sbjct: 187 DLN 189
>MYO1_YEAST (P08964) Myosin-1 (Type II myosin)| Length = 1928 Score = 32.0 bits (71), Expect = 1.2 Identities = 19/57 (33%), Positives = 30/57 (52%) Frame = -2 Query: 522 DKLTKIQRDLDETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMFYKQAKKTNS 352 DKL+ + DLD + L K + R L SLV ++SDL + ++ F K+ N+ Sbjct: 1036 DKLSSSEEDLDIKLVTLEKNCNIAMSR---LQSLVTENSDLRSKNENFKKEKAALNN 1089
>FGD6_MOUSE (Q69ZL1) FYVE, RhoGEF and PH domain-containing protein 6| Length = 1399 Score = 31.2 bits (69), Expect = 2.1 Identities = 19/75 (25%), Positives = 33/75 (44%) Frame = -2 Query: 441 GERLDSLVEKSSDLSAASQMFYKQAKKTNSCCTIL*SLNCDPSVSLGRLQKENQLNTVVL 262 G + V+K + + S K+ S CT C+P VS +QKE+ ++ ++ Sbjct: 416 GSGVSPAVDKETTYTQCSTQPLSLPKQVTSACTDQPPATCNPEVSAPPIQKESS-SSRII 474 Query: 261 YRKPTAHENVPGSIL 217 +KP H +L Sbjct: 475 PKKPQRHSLPAAGVL 489
>Y655_MYCPN (P75136) Hypothetical UPF0134 protein MPN655 (E09_orf204o)| Length = 204 Score = 30.4 bits (67), Expect = 3.5 Identities = 18/64 (28%), Positives = 33/64 (51%) Frame = -2 Query: 546 KFQDPAEADKLTKIQRDLDETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMFYKQA 367 +F+D + +LTKI+ +D+ ++ + K E V +GE + L + S Q+ K Sbjct: 125 EFKD-SNNQRLTKIENKVDKLEVKVDKLAEIVQTQGEEIKELKVEQKAQSETLQLILKTL 183 Query: 366 KKTN 355 +K N Sbjct: 184 QKMN 187
>APOA1_SPAAU (O42175) Apolipoprotein A-I precursor (Apo-AI) (ApoA-I)| Length = 260 Score = 30.4 bits (67), Expect = 3.5 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = -2 Query: 555 ALTKFQDPAEADKLTKIQRDLDETKIILHKTIENVLQR-GERLDSLVE 415 AL +P + TKIQ +++ETK +L +E V + ERL+SL E Sbjct: 156 ALKTRLEPVMEELRTKIQANVEETKAVLMPMVETVRTKVTERLESLRE 203
>NANB_STRPN (Q54727) Sialidase B precursor (EC 3.2.1.18) (Neuraminidase B)| Length = 697 Score = 29.6 bits (65), Expect = 6.0 Identities = 17/60 (28%), Positives = 28/60 (46%) Frame = +3 Query: 183 YSKASPKNNRFTVLIPARFHEQSAYGTTQRYSIDFLSGAFQERLKDHSSNFRV*YNNCLF 362 Y++ + K +T+ E T ++YS+DF SG+ +ER V Y + LF Sbjct: 392 YNETTNKPTNYTINDKYEVLEGGKSLTVEQYSVDFDSGSLRERHNGKQVPMNVFYKDSLF 451
>DPOE_CANGA (Q6FNY7) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)| (DNA polymerase II subunit A) Length = 2217 Score = 29.3 bits (64), Expect = 7.8 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = +1 Query: 115 LRDIDNLRREDDDVGRC*VVLVAIRRRHQRITDLQ 219 ++DI+ L EDDD+ R + V R +++R D+Q Sbjct: 1212 IKDIEELFHEDDDIKRIKLAKVTSRNKNKRNRDVQ 1246
>STXB6_HUMAN (Q8NFX7) Syntaxin-binding protein 6 (Amisyn)| Length = 210 Score = 29.3 bits (64), Expect = 7.8 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = -2 Query: 492 DETKIILHKTIENVLQRGERLDSLVEKSSDLSAASQMFYKQAKK 361 D + K + + +RGERL EK+ DL ++Q F + A K Sbjct: 160 DSVTSAVQKASQALNERGERLGRAEEKTEDLKNSAQQFAETAHK 203 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,073,609 Number of Sequences: 219361 Number of extensions: 1460421 Number of successful extensions: 3322 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 3224 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3320 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4528412720 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
