ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6h15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SRYC_DROME (P15619) Serendipity locus protein H-1 (Protein wings... 31 4.1
2KPYK_CLOAB (O08309) Pyruvate kinase (EC 2.7.1.40) (PK) 30 7.0
3TRIP6_HUMAN (Q15654) Thyroid receptor-interacting protein 6 (TRI... 30 7.0
4MAD1_KLULA (Q6CMM2) Spindle assembly checkpoint component MAD1 (... 30 9.1

>SRYC_DROME (P15619) Serendipity locus protein H-1 (Protein wings-down)|
           (Protein pourquoi-pas)
          Length = 869

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 17/56 (30%), Positives = 32/56 (57%)
 Frame = -3

Query: 333 QRELSQIIMKEVLEKTRMFYEEGQMSREDVRTRVAAQRLDKKPFTTLGDYLPDLHG 166
           +RE  Q+  K++ +K ++  ++GQ  +  +    A  ++ K+P  T G +L DLHG
Sbjct: 623 KRERKQLAPKQLQQKPQLL-QQGQPQQSSLEPIPAVPQIKKEPVQTQGPFL-DLHG 676



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>KPYK_CLOAB (O08309) Pyruvate kinase (EC 2.7.1.40) (PK)|
          Length = 473

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
 Frame = +1

Query: 301 LLHDDLGKFTLDVIELSSESLNWDIS*VLCPLQNMGIAGSR*HAKVLLIPSELPHVVE-D 477
           L+ D L   T++ IE ++         V+C + N G+ GS     V  +  +LP + E D
Sbjct: 123 LIDDGLVGLTVEAIEGTN---------VICTVANTGLVGSHKGVNVPNVSIQLPAMTEKD 173

Query: 478 IESITDSTTRLLDVVEVSLINKAGRAVPCHPVRHLSTPYDVRKDSTIENK 627
              +       +D+V  S I K    +    V + +   +++  S IEN+
Sbjct: 174 KSDLIFGCKEEIDMVSASFIRKPEDVLAIRKVLNENGGENIQIFSKIENQ 223



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>TRIP6_HUMAN (Q15654) Thyroid receptor-interacting protein 6 (TRIP6)|
           (OPA-interacting protein 1) (Zyxin-related protein 1)
           (ZRP-1)
          Length = 476

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 475 PPPHAGVQTGSAEPSHVT*IRRCPYSAMGKEPRRYPSSTTPS 350
           PPP    +TGS +P+  + +   PY   G  P  Y +++TP+
Sbjct: 125 PPPPPAYRTGSLKPNPASPLPASPYG--GPTPASYTTASTPA 164



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>MAD1_KLULA (Q6CMM2) Spindle assembly checkpoint component MAD1 (Mitotic arrest|
           deficient protein 1)
          Length = 648

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
 Frame = -3

Query: 348 EFYHIQRELSQII--MKEVLEKTRMFYEEGQMSREDVRTRVAAQRLDKKPFTTL 193
           E Y +Q +  + +  ++  L+ T++ YEE    +E+++++ A  + D+K  TTL
Sbjct: 48  ETYSLQNKYDKSMNELENALKDTKILYEENIKLKEELKSKDALPKEDEKIITTL 101


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,340,274
Number of Sequences: 219361
Number of extensions: 2054149
Number of successful extensions: 5355
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5355
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6912958834
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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