ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags6h12 |
|---|---|
| Clone Library Name | barley_pub |
>ILV5_ARATH (Q05758) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 591 Score = 274 bits (701), Expect = 1e-73 Identities = 135/152 (88%), Positives = 143/152 (94%) Frame = -1 Query: 596 GEKVRSTRPDGDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPF 417 GE+VR +RP GDLGPL+PFTAGVYVALMMAQIE+LRKKGHSYSEIINESVIESVDSLNPF Sbjct: 439 GERVRKSRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPF 498 Query: 416 MHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVH 237 MHARGV+FMVDNCSTTARLGSRKWAPRFDYILTQQA V VD A IN+DLISNF SDPVH Sbjct: 499 MHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAAINRDLISNFFSDPVH 558 Query: 236 GAIEVCAELRPTVDISVTADADFVRPELRQSA 141 GAIEVCA+LRPTVDISV ADADFVRPELRQS+ Sbjct: 559 GAIEVCAQLRPTVDISVPADADFVRPELRQSS 590
>ILV5_PEA (O82043) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 581 Score = 274 bits (701), Expect = 1e-73 Identities = 135/150 (90%), Positives = 143/150 (95%) Frame = -1 Query: 596 GEKVRSTRPDGDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPF 417 GE+VRSTRP GDLGPL+PFTAGV+VA+MMAQIEVLRKKGHSYSEIINESVIESVDSLNPF Sbjct: 429 GERVRSTRPAGDLGPLYPFTAGVFVAMMMAQIEVLRKKGHSYSEIINESVIESVDSLNPF 488 Query: 416 MHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVH 237 MHARGV+FMVDNCSTTARLGSRKWAPRFDYILTQQA V VD APINQDLISNF+SDPVH Sbjct: 489 MHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAPINQDLISNFVSDPVH 548 Query: 236 GAIEVCAELRPTVDISVTADADFVRPELRQ 147 GAI+VCAELRPT+DISV A ADFVRPELRQ Sbjct: 549 GAIQVCAELRPTLDISVPAAADFVRPELRQ 578
>ILV5_SPIOL (Q01292) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 595 Score = 273 bits (697), Expect = 4e-73 Identities = 134/151 (88%), Positives = 143/151 (94%) Frame = -1 Query: 596 GEKVRSTRPDGDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPF 417 GEKVRS RP GDLGPL+PFTAGVYVALMMAQIE+LRKKGHSYSEIINESVIE+VDSLNPF Sbjct: 445 GEKVRSVRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIEAVDSLNPF 504 Query: 416 MHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVH 237 MHARGV+FMVDNCSTTARLGSRKWAPRFDYIL+QQA V VD APINQDLISNF+SDPVH Sbjct: 505 MHARGVSFMVDNCSTTARLGSRKWAPRFDYILSQQALVAVDNGAPINQDLISNFLSDPVH 564 Query: 236 GAIEVCAELRPTVDISVTADADFVRPELRQS 144 AI VCA+LRP+VDISVTADADFVRPELRQ+ Sbjct: 565 EAIGVCAQLRPSVDISVTADADFVRPELRQA 595
>ILV5_NEUCR (P38674) Ketol-acid reductoisomerase, mitochondrial precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 402 Score = 67.8 bits (164), Expect = 2e-11 Identities = 32/62 (51%), Positives = 43/62 (69%) Frame = -1 Query: 518 LMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAP 339 + +AQ EVLR++GHS SE NE+V E+ SL P + A G+ +M D CSTTAR G+ W P Sbjct: 276 MFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGAHGMDWMFDACSTTARRGAIDWTP 335 Query: 338 RF 333 +F Sbjct: 336 KF 337
>ILV5_SCHPO (P78827) Probable ketol-acid reductoisomerase, mitochondrial| precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 404 Score = 62.4 bits (150), Expect = 1e-09 Identities = 30/62 (48%), Positives = 41/62 (66%) Frame = -1 Query: 518 LMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAP 339 L +AQ +VLR++GHS +E NE+V E+ SL P + G+ +M CSTTAR G+ W P Sbjct: 277 LFLAQYQVLRERGHSPAEAFNETVEEATQSLYPLIGKYGLDYMFAACSTTARRGAIDWTP 336 Query: 338 RF 333 RF Sbjct: 337 RF 338
>ILV5_YEAST (P06168) Ketol-acid reductoisomerase, mitochondrial precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 395 Score = 61.6 bits (148), Expect = 2e-09 Identities = 30/62 (48%), Positives = 40/62 (64%) Frame = -1 Query: 518 LMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAP 339 + +AQ +VLR+ GHS SE NE+V E+ SL P + G+ +M D CSTTAR G+ W P Sbjct: 270 MFLAQYDVLRENGHSPSEAFNETVEEATQSLYPLIGKYGMDYMYDACSTTARRGALDWYP 329 Query: 338 RF 333 F Sbjct: 330 IF 331
>SYS_COREF (Q8FLY5) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 419 Score = 30.8 bits (68), Expect = 3.1 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Frame = +3 Query: 183 RHRDVDGGPQLGADLDGAVDGVRHEVA---DEVLVDGRILVHRHKR-LLGQDVVE 335 R+RD +G PQ+ A L+G + R VA + DG ++V R +G+DV+E Sbjct: 362 RYRDENGKPQIAATLNGTLATTRWLVAILENNQQADGSVIVPEALRPFVGKDVLE 416
>ICAA_STAAW (Q8NUI7) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 335 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 228 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAU (Q9RQP9) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 335 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 228 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAS (Q6G608) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 335 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 228 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAR (Q6GDD8) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 335 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 228 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAN (Q7A351) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 335 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 228 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAM (Q99QX3) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 335 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 228 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAC (Q5HCN1) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 335 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 228 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ILVC_DEHE1 (Q3Z891) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 332 Score = 30.0 bits (66), Expect = 5.3 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 17/126 (13%) Frame = -1 Query: 533 GVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGS 354 G +L+ A E L + G+ E+ + + + M+ G+A+M D+ S TA+ G Sbjct: 201 GGTTSLVKAGFETLVEAGYQ-PEVAYFECLHELKLIVDLMYQGGIAYMRDSISDTAKYGD 259 Query: 353 RKWAPRFDYILTQQAFVTVDKDAPINQD-------LISNFMSDPVHGAI----------E 225 PR ++ ++ + T+ + QD ++ N PV+ ++ E Sbjct: 260 FTRGPR---VINEETYETMGEILGEIQDGSFAKEWILENQAGRPVYNSLRRMESEHLIEE 316 Query: 224 VCAELR 207 V AELR Sbjct: 317 VGAELR 322
>FIT3_YEAST (Q08907) Facilitator of iron transport 3 precursor| Length = 204 Score = 29.3 bits (64), Expect = 9.0 Identities = 17/74 (22%), Positives = 38/74 (51%) Frame = +1 Query: 82 YITVHELSTHQKTTLQTRI*ADCRSSGRTKSASAVTEMSTVGLSSAQTSMAPWTGSDMKL 261 ++ E S++ + T ++ +S + +A+ E S+ SS+ ++ +TG+ + Sbjct: 128 FVWTGEGSSNTWSPSSTSTSSEAATSSASTTATTTAETSSSATSSSTAELSSYTGAADAI 187 Query: 262 LMRSWLMGASLSTV 303 + LMGA+L+ V Sbjct: 188 TAGTGLMGAALAAV 201
>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7| homolog Length = 1304 Score = 29.3 bits (64), Expect = 9.0 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = +3 Query: 105 HPSKNNSSDPNLGRLPELRTHEVSIGRHRDVDGGP 209 HP+ + SDP L R P L H + G D GP Sbjct: 862 HPTGSRLSDPRLSRDPRLSRHAETSGGSGPGDSGP 896
>ILVC_DEHSC (Q3ZXI2) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 332 Score = 29.3 bits (64), Expect = 9.0 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 17/126 (13%) Frame = -1 Query: 533 GVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGS 354 G +L+ A E L + G+ E+ + + + M+ G+A+M D+ S TA+ G Sbjct: 201 GGTTSLVKAGFETLVEAGYQ-PEVAYFECLHELKLIVDLMYQGGIAYMRDSISDTAKYGD 259 Query: 353 RKWAPRFDYILTQQAFVTVDKDAPINQD-------LISNFMSDPVHGAI----------E 225 PR ++ + + T+ + QD ++ N PV+ ++ E Sbjct: 260 FTRGPR---VINEDTYETMGEILGEIQDGSFAKEWILENQAGRPVYNSLRRMESEHLIEE 316 Query: 224 VCAELR 207 V AELR Sbjct: 317 VGAELR 322 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,486,304 Number of Sequences: 219361 Number of extensions: 1607678 Number of successful extensions: 5207 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 5000 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5206 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
