ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6h11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470011.1| Oryza sativa (japonica cultivar-group), mRNA 250 4e-63
2dbj|AK067857.1| Oryza sativa (japonica cultivar-group) cDNA clon... 242 9e-61
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 165 2e-37
4gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genom... 165 2e-37
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 165 2e-37
6gb|AY108879.1| Zea mays PCO138573 mRNA sequence 151 3e-33
7gb|AC139183.4| Mus musculus BAC clone RP24-114C21 from chromosom... 46 0.11
8gb|AC158774.6| Mus musculus chromosome 18, clone RP23-427N16, co... 46 0.11
9gb|AC124787.6| Mus musculus chromosome 18, clone RP24-395J18, co... 46 0.11
10gb|AC084071.20| Mus musculus strain C57BL/6J chromosome 5 clone ... 44 0.42
11gb|AC111130.17| Mus musculus chromosome 5, clone RP23-339G19, co... 42 1.7
12gb|AC115858.14| Mus musculus chromosome 7, clone RP24-285C16, co... 42 1.7
13ref|XM_764770.1| Giardia lamblia ATCC 50803 hypothetical protein... 42 1.7
14gb|AC111086.18| Mus musculus chromosome 7, clone RP23-152P5, com... 42 1.7
15gb|AC158944.7| Mus musculus chromosome 5, clone RP23-260N17, com... 42 1.7
16gb|AC091988.3| Homo sapiens chromosome 5 clone RP11-73G8, comple... 42 1.7
17gb|AC026797.3|AC026797 Homo sapiens chromosome 5 clone CTD-2299N... 42 1.7
18gb|AY661657.1| Sorghum bicolor clone BAC 60H10, complete sequence 40 6.6
19gb|AY661656.1| Sorghum bicolor clone BAC 88M4, complete sequence 40 6.6
20gb|AC132919.9| Mus musculus chromosome 12, clone RP24-356H3, com... 40 6.6
21gb|AC146605.3| Mus musculus BAC clone RP23-304J7 from chromosome... 40 6.6
22gb|AC134831.3| Mus musculus BAC clone RP24-500P4 from chromosome... 40 6.6
23gb|AC004931.1| Homo sapiens PAC clone RP5-922I23 from 7, complet... 40 6.6
24gb|AC099710.8| Mus musculus, clone RP23-366C6, complete sequence 40 6.6
25gb|AC122056.4| Mus musculus BAC clone RP24-466A3 from chromosome... 40 6.6
26emb|Z31590.1|CER01H10 Caenorhabditis elegans Cosmid R01H10, comp... 40 6.6
27gb|AC121586.3| Mus musculus BAC clone RP23-273A13 from 2, comple... 40 6.6
28emb|CR936945.2| Medicago truncatula chromosome 5 clone mte1-67e6... 40 6.6
29gb|AC162297.5| Mus musculus chromosome 18, clone RP24-276H6, com... 40 6.6
30emb|CR931732.2| Medicago truncatula chromosome 5 clone mth2-117e... 40 6.6
31dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
32gb|AC093028.13| Homo sapiens 12 BAC RP11-604N13 (Roswell Park Ca... 40 6.6
33emb|BX276109.11| Mouse DNA sequence from clone RP23-209P8 on chr... 40 6.6
34dbj|AP005388.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
35gb|AY999337.1| Mal de Rio Cuarto virus isolate MRCV-RC putative ... 40 6.6
36gb|AC125067.4| Mus musculus BAC clone RP23-431C5 from 12, comple... 40 6.6
37emb|AL671908.8| Mouse DNA sequence from clone RP23-307G22 on chr... 40 6.6 
>ref|XM_470011.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2626

 Score =  250 bits (126), Expect = 4e-63
 Identities = 255/298 (85%)
 Strand = Plus / Minus

                                                                        
Query: 190  tcagctgatccctcaggacccttctcagcagcttgtttgaagcagttctcgggaattcgg 249
            |||||||||||||||| || ||||| ||||||||||||||||| ||||| ||||| || |
Sbjct: 2193 tcagctgatccctcagtactcttcttagcagcttgtttgaagctgttcttgggaactcag 2134

                                                                        
Query: 250  ggacgactttgacatagctcaccctgaaaagggggttgaggttcctctggatggctctct 309
            | || | |||||||||||||||| ||||||| || || | |||| | |||||||||||||
Sbjct: 2133 gaactattttgacatagctcaccttgaaaagaggatttaagttcttttggatggctctct 2074

                                                                        
Query: 310  ggaacttgctcttcagaagatttgtatcgcatgttgcggatctatcttttagcactgcca 369
            | || |||||||| |||| ||||| ||| |||| ||  ||||||||||||||||| ||||
Sbjct: 2073 gaaatttgctcttgagaacatttgcatcacatggtggtgatctatcttttagcacagcca 2014

                                                                        
Query: 370  agatagccagttgctctggtcccccgccggaaggtttgatgctaacagctgctgtttcta 429
            |||||||||| || ||||||||||| || | ||||||||||||||| |||||||||||||
Sbjct: 2013 agatagccagctgttctggtcccccaccagcaggtttgatgctaaccgctgctgtttcta 1954

                                                                      
Query: 430  gcagaccctcatcggctccattacaaacccgttcaatctccactgagcttgtcttaat 487
            | ||| |||||||||||| |||||| | ||| || || ||||| || |||||||||||
Sbjct: 1953 gtagagcctcatcggctctattacatatccgctctatttccacggaacttgtcttaat 1896
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>dbj|AK067857.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121L24, full
            insert sequence
          Length = 2630

 Score =  242 bits (122), Expect = 9e-61
 Identities = 254/298 (85%)
 Strand = Plus / Minus

                                                                        
Query: 190  tcagctgatccctcaggacccttctcagcagcttgtttgaagcagttctcgggaattcgg 249
            |||||||||||||||| || ||||| ||||||||||||||||| ||||| ||||| || |
Sbjct: 2197 tcagctgatccctcagtactcttcttagcagcttgtttgaagctgttcttgggaactcag 2138

                                                                        
Query: 250  ggacgactttgacatagctcaccctgaaaagggggttgaggttcctctggatggctctct 309
            | || | |||||||||||||||| ||||||| || || | |||| | |||||||||||||
Sbjct: 2137 gaactattttgacatagctcaccttgaaaagaggatttaagttcttttggatggctctct 2078

                                                                        
Query: 310  ggaacttgctcttcagaagatttgtatcgcatgttgcggatctatcttttagcactgcca 369
            | || |||||||| |||| || || ||| |||| ||  ||||||||||||||||| ||||
Sbjct: 2077 gaaatttgctcttgagaacatctgcatcacatggtggtgatctatcttttagcacagcca 2018

                                                                        
Query: 370  agatagccagttgctctggtcccccgccggaaggtttgatgctaacagctgctgtttcta 429
            |||||||||| || ||||||||||| || | ||||||||||||||| |||||||||||||
Sbjct: 2017 agatagccagctgttctggtcccccaccagcaggtttgatgctaaccgctgctgtttcta 1958

                                                                      
Query: 430  gcagaccctcatcggctccattacaaacccgttcaatctccactgagcttgtcttaat 487
            | ||| |||||||||||| |||||| | ||| || || ||||| || |||||||||||
Sbjct: 1957 gtagagcctcatcggctctattacatatccgctctatttccacggaacttgtcttaat 1900
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  165 bits (83), Expect = 2e-37
 Identities = 161/187 (86%)
 Strand = Plus / Plus

                                                                            
Query: 297      tggatggctctctggaacttgctcttcagaagatttgtatcgcatgttgcggatctatct 356
                |||||||||||||| || |||||||| |||| ||||| ||| |||| ||  |||||||||
Sbjct: 33328647 tggatggctctctgaaatttgctcttgagaacatttgcatcacatggtggtgatctatct 33328706

                                                                            
Query: 357      tttagcactgccaagatagccagttgctctggtcccccgccggaaggtttgatgctaaca 416
                |||||||| |||||||||||||| || ||||||||||| || | ||||||||||||||| 
Sbjct: 33328707 tttagcacagccaagatagccagctgttctggtcccccaccagcaggtttgatgctaacc 33328766

                                                                            
Query: 417      gctgctgtttctagcagaccctcatcggctccattacaaacccgttcaatctccactgag 476
                |||||||||||||| ||| |||||||||||| |||||| | ||| || || ||||| || 
Sbjct: 33328767 gctgctgtttctagtagagcctcatcggctctattacatatccgctctatttccacggaa 33328826

                       
Query: 477      cttgtct 483
                |||||||
Sbjct: 33328827 cttgtct 33328833



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 73/83 (87%)
 Strand = Plus / Plus

                                                                            
Query: 190      tcagctgatccctcaggacccttctcagcagcttgtttgaagcagttctcgggaattcgg 249
                |||||||||||||||| || ||||| ||||||||||||||||| ||||| ||||| || |
Sbjct: 33328440 tcagctgatccctcagtactcttcttagcagcttgtttgaagctgttcttgggaactcag 33328499

                                       
Query: 250      ggacgactttgacatagctcacc 272
                | || | ||||||||||||||||
Sbjct: 33328500 gaactattttgacatagctcacc 33328522
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>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete
             sequence
          Length = 122815

 Score =  165 bits (83), Expect = 2e-37
 Identities = 161/187 (86%)
 Strand = Plus / Plus

                                                                         
Query: 297   tggatggctctctggaacttgctcttcagaagatttgtatcgcatgttgcggatctatct 356
             |||||||||||||| || |||||||| |||| ||||| ||| |||| ||  |||||||||
Sbjct: 85163 tggatggctctctgaaatttgctcttgagaacatttgcatcacatggtggtgatctatct 85222

                                                                         
Query: 357   tttagcactgccaagatagccagttgctctggtcccccgccggaaggtttgatgctaaca 416
             |||||||| |||||||||||||| || ||||||||||| || | ||||||||||||||| 
Sbjct: 85223 tttagcacagccaagatagccagctgttctggtcccccaccagcaggtttgatgctaacc 85282

                                                                         
Query: 417   gctgctgtttctagcagaccctcatcggctccattacaaacccgttcaatctccactgag 476
             |||||||||||||| ||| |||||||||||| |||||| | ||| || || ||||| || 
Sbjct: 85283 gctgctgtttctagtagagcctcatcggctctattacatatccgctctatttccacggaa 85342

                    
Query: 477   cttgtct 483
             |||||||
Sbjct: 85343 cttgtct 85349



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 73/83 (87%)
 Strand = Plus / Plus

                                                                         
Query: 190   tcagctgatccctcaggacccttctcagcagcttgtttgaagcagttctcgggaattcgg 249
             |||||||||||||||| || ||||| ||||||||||||||||| ||||| ||||| || |
Sbjct: 84956 tcagctgatccctcagtactcttcttagcagcttgtttgaagctgttcttgggaactcag 85015

                                    
Query: 250   ggacgactttgacatagctcacc 272
             | || | ||||||||||||||||
Sbjct: 85016 gaactattttgacatagctcacc 85038
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  165 bits (83), Expect = 2e-37
 Identities = 161/187 (86%)
 Strand = Plus / Plus

                                                                            
Query: 297      tggatggctctctggaacttgctcttcagaagatttgtatcgcatgttgcggatctatct 356
                |||||||||||||| || |||||||| |||| ||||| ||| |||| ||  |||||||||
Sbjct: 33419157 tggatggctctctgaaatttgctcttgagaacatttgcatcacatggtggtgatctatct 33419216

                                                                            
Query: 357      tttagcactgccaagatagccagttgctctggtcccccgccggaaggtttgatgctaaca 416
                |||||||| |||||||||||||| || ||||||||||| || | ||||||||||||||| 
Sbjct: 33419217 tttagcacagccaagatagccagctgttctggtcccccaccagcaggtttgatgctaacc 33419276

                                                                            
Query: 417      gctgctgtttctagcagaccctcatcggctccattacaaacccgttcaatctccactgag 476
                |||||||||||||| ||| |||||||||||| |||||| | ||| || || ||||| || 
Sbjct: 33419277 gctgctgtttctagtagagcctcatcggctctattacatatccgctctatttccacggaa 33419336

                       
Query: 477      cttgtct 483
                |||||||
Sbjct: 33419337 cttgtct 33419343



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 73/83 (87%)
 Strand = Plus / Plus

                                                                            
Query: 190      tcagctgatccctcaggacccttctcagcagcttgtttgaagcagttctcgggaattcgg 249
                |||||||||||||||| || ||||| ||||||||||||||||| ||||| ||||| || |
Sbjct: 33418950 tcagctgatccctcagtactcttcttagcagcttgtttgaagctgttcttgggaactcag 33419009

                                       
Query: 250      ggacgactttgacatagctcacc 272
                | || | ||||||||||||||||
Sbjct: 33419010 gaactattttgacatagctcacc 33419032
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>gb|AY108879.1| Zea mays PCO138573 mRNA sequence
          Length = 462

 Score =  151 bits (76), Expect = 3e-33
 Identities = 124/140 (88%)
 Strand = Plus / Minus

                                                                       
Query: 192 agctgatccctcaggacccttctcagcagcttgtttgaagcagttctcgggaattcgggg 251
           |||||||||||||| |||||||||||||||||||| ||||| ||||||||||| || | |
Sbjct: 201 agctgatccctcagaacccttctcagcagcttgttcgaagccgttctcgggaactcagcg 142

                                                                       
Query: 252 acgactttgacatagctcaccctgaaaagggggttgaggttcctctggatggctctctgg 311
           ||||||||||||||||||||| |||| || || ||||||||| |||| |||||  |||||
Sbjct: 141 acgactttgacatagctcaccttgaagagaggattgaggttcttctgaatggcagtctgg 82

                               
Query: 312 aacttgctcttcagaagatt 331
           ||||| ||||| ||||||||
Sbjct: 81  aacttcctcttgagaagatt 62
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>gb|AC139183.4| Mus musculus BAC clone RP24-114C21 from chromosome 18, complete
             sequence
          Length = 147109

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 294   ctctggatggctctctggaactt 316
             |||||||||||||||||||||||
Sbjct: 54245 ctctggatggctctctggaactt 54223
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>gb|AC158774.6| Mus musculus chromosome 18, clone RP23-427N16, complete sequence
          Length = 207351

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 294   ctctggatggctctctggaactt 316
             |||||||||||||||||||||||
Sbjct: 42222 ctctggatggctctctggaactt 42200
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>gb|AC124787.6| Mus musculus chromosome 18, clone RP24-395J18, complete sequence
          Length = 164628

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 294   ctctggatggctctctggaactt 316
             |||||||||||||||||||||||
Sbjct: 59784 ctctggatggctctctggaactt 59762
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>gb|AC084071.20| Mus musculus strain C57BL/6J chromosome 5 clone rp23-426e16, complete
             sequence
          Length = 194175

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 6     acacacacaataaataactacacaca 31
             |||||||||||||||||||| |||||
Sbjct: 63225 acacacacaataaataactagacaca 63200
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>gb|AC111130.17| Mus musculus chromosome 5, clone RP23-339G19, complete sequence
          Length = 212923

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 461   ttcaatctccactgagcttgt 481
             |||||||||||||||||||||
Sbjct: 36220 ttcaatctccactgagcttgt 36240
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>gb|AC115858.14| Mus musculus chromosome 7, clone RP24-285C16, complete sequence
          Length = 175843

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 421    ctgtttctagcagaccctcat 441
              |||||||||||||||||||||
Sbjct: 156920 ctgtttctagcagaccctcat 156940
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>ref|XM_764770.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_741_25710_4783)
             partial mRNA
          Length = 20928

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 309   tggaacttgctcttcagaaga 329
             |||||||||||||||||||||
Sbjct: 17751 tggaacttgctcttcagaaga 17771
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>gb|AC111086.18| Mus musculus chromosome 7, clone RP23-152P5, complete sequence
          Length = 186200

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 421  ctgtttctagcagaccctcat 441
            |||||||||||||||||||||
Sbjct: 6906 ctgtttctagcagaccctcat 6926
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>gb|AC158944.7| Mus musculus chromosome 5, clone RP23-260N17, complete sequence
          Length = 161487

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 461    ttcaatctccactgagcttgt 481
              |||||||||||||||||||||
Sbjct: 155681 ttcaatctccactgagcttgt 155701
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>gb|AC091988.3| Homo sapiens chromosome 5 clone RP11-73G8, complete sequence
          Length = 148263

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 282   gggttgaggttcctctggatggctc 306
             |||| ||||||||||||||||||||
Sbjct: 51468 gggtagaggttcctctggatggctc 51492
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>gb|AC026797.3|AC026797 Homo sapiens chromosome 5 clone CTD-2299N12, complete sequence
          Length = 172043

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 282   gggttgaggttcctctggatggctc 306
             |||| ||||||||||||||||||||
Sbjct: 13821 gggtagaggttcctctggatggctc 13797
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>gb|AY661657.1| Sorghum bicolor clone BAC 60H10, complete sequence
          Length = 125927

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   cacgagctcttgcttcagct 195
             ||||||||||||||||||||
Sbjct: 16679 cacgagctcttgcttcagct 16698
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>gb|AY661656.1| Sorghum bicolor clone BAC 88M4, complete sequence
          Length = 279448

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    cacgagctcttgcttcagct 195
              ||||||||||||||||||||
Sbjct: 205431 cacgagctcttgcttcagct 205450
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>gb|AC132919.9| Mus musculus chromosome 12, clone RP24-356H3, complete sequence
          Length = 163965

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     acacacacaataaataacta 25
             ||||||||||||||||||||
Sbjct: 70878 acacacacaataaataacta 70897
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>gb|AC146605.3| Mus musculus BAC clone RP23-304J7 from chromosome 14, complete sequence
          Length = 225868

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 266    gctcaccctgaaaagggggt 285
              ||||||||||||||||||||
Sbjct: 143477 gctcaccctgaaaagggggt 143458
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>gb|AC134831.3| Mus musculus BAC clone RP24-500P4 from chromosome 18, complete sequence
          Length = 188380

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 6     acacacacaataaataactacacacacc 33
             |||||||||||| |||| ||||||||||
Sbjct: 56903 acacacacaatacataagtacacacacc 56930
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>gb|AC004931.1| Homo sapiens PAC clone RP5-922I23 from 7, complete sequence
          Length = 145844

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    acccaatgaagtgaatgaaa 50
             ||||||||||||||||||||
Sbjct: 63137 acccaatgaagtgaatgaaa 63156
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>gb|AC099710.8| Mus musculus, clone RP23-366C6, complete sequence
          Length = 225122

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 291    ttcctctggatggctctctg 310
              ||||||||||||||||||||
Sbjct: 104546 ttcctctggatggctctctg 104527
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>gb|AC122056.4| Mus musculus BAC clone RP24-466A3 from chromosome 14, complete sequence
          Length = 179685

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   gctcaccctgaaaagggggt 285
             ||||||||||||||||||||
Sbjct: 21470 gctcaccctgaaaagggggt 21489
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>emb|Z31590.1|CER01H10 Caenorhabditis elegans Cosmid R01H10, complete sequence
          Length = 31255

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   atccattttcctgttgaaaa 134
             ||||||||||||||||||||
Sbjct: 26560 atccattttcctgttgaaaa 26541
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>gb|AC121586.3| Mus musculus BAC clone RP23-273A13 from 2, complete sequence
          Length = 154614

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    caataaataactacacacac 32
             ||||||||||||||||||||
Sbjct: 87685 caataaataactacacacac 87666
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>emb|CR936945.2| Medicago truncatula chromosome 5 clone mte1-67e6, COMPLETE SEQUENCE
          Length = 127675

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 301    tggctctctggaacttgctc 320
              ||||||||||||||||||||
Sbjct: 127138 tggctctctggaacttgctc 127119
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>gb|AC162297.5| Mus musculus chromosome 18, clone RP24-276H6, complete sequence
          Length = 190293

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 6      acacacacaataaataactacacacacc 33
              |||||||||||| |||| ||||||||||
Sbjct: 162125 acacacacaatacataagtacacacacc 162152
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>emb|CR931732.2| Medicago truncatula chromosome 5 clone mth2-117e11, COMPLETE SEQUENCE
          Length = 117393

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 301    tggctctctggaacttgctc 320
              ||||||||||||||||||||
Sbjct: 111603 tggctctctggaacttgctc 111622
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 3        tcaacacacacaataaataa 22
                ||||||||||||||||||||
Sbjct: 19218645 tcaacacacacaataaataa 19218664
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>gb|AC093028.13| Homo sapiens 12 BAC RP11-604N13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 153517

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 10    acacaataaataactacacacacc 33
             |||||||||||||||| |||||||
Sbjct: 13497 acacaataaataactaaacacacc 13520
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>emb|BX276109.11| Mouse DNA sequence from clone RP23-209P8 on chromosome 2, complete
            sequence
          Length = 69864

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 13   caataaataactacacacac 32
            ||||||||||||||||||||
Sbjct: 9050 caataaataactacacacac 9069
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>dbj|AP005388.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0086F04
          Length = 163579

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      tcaacacacacaataaataa 22
              ||||||||||||||||||||
Sbjct: 141010 tcaacacacacaataaataa 141029
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>gb|AY999337.1| Mal de Rio Cuarto virus isolate MRCV-RC putative major outer shell
            protein gene, partial cds
          Length = 1665

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 110  tgaagatccattttcctgtt 129
            ||||||||||||||||||||
Sbjct: 1090 tgaagatccattttcctgtt 1109
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>gb|AC125067.4| Mus musculus BAC clone RP23-431C5 from 12, complete sequence
          Length = 192938

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     acacacacaataaataacta 25
             ||||||||||||||||||||
Sbjct: 69361 acacacacaataaataacta 69380
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>emb|AL671908.8| Mouse DNA sequence from clone RP23-307G22 on chromosome X, complete
             sequence
          Length = 205224

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   ttcctctggatggctctctg 310
             ||||||||||||||||||||
Sbjct: 14542 ttcctctggatggctctctg 14523


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,212,705
Number of Sequences: 3902068
Number of extensions: 4212705
Number of successful extensions: 83826
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83685
Number of HSP's gapped (non-prelim): 141
length of query: 490
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 468
effective length of database: 17,147,199,772
effective search space: 8024889493296
effective search space used: 8024889493296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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