ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags6h03 |
|---|---|
| Clone Library Name | barley_pub |
>RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)| Length = 261 Score = 47.4 bits (111), Expect(2) = 1e-09 Identities = 23/25 (92%), Positives = 23/25 (92%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGD 88 V VRKVKILKAPKFDLGKLM VHGD Sbjct: 209 VFVRKVKILKAPKFDLGKLMEVHGD 233 Score = 32.7 bits (73), Expect(2) = 1e-09 Identities = 16/26 (61%), Positives = 20/26 (76%) Frame = -2 Query: 80 QDVGVKLDRPDGDEVIPGAEEVAAAE 3 +D+G KLDRP DE + G +EVAAAE Sbjct: 237 EDIGTKLDRPAEDEAMAG-QEVAAAE 261
>RS3A_HELAN (P49198) 40S ribosomal protein S3a| Length = 259 Score = 46.2 bits (108), Expect(2) = 2e-08 Identities = 21/25 (84%), Positives = 23/25 (92%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGD 88 V +RKVKILKAPKFD+GKLM VHGD Sbjct: 209 VFIRKVKILKAPKFDIGKLMEVHGD 233 Score = 30.4 bits (67), Expect(2) = 2e-08 Identities = 16/26 (61%), Positives = 18/26 (69%) Frame = -2 Query: 83 SQDVGVKLDRPDGDEVIPGAEEVAAA 6 S+DVGVKLDRP +E P A EV A Sbjct: 235 SEDVGVKLDRP-AEEAAPEATEVIGA 259
>RS3A_ARATH (Q42262) 40S ribosomal protein S3a| Length = 261 Score = 47.0 bits (110), Expect(2) = 6e-08 Identities = 22/25 (88%), Positives = 23/25 (92%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGD 88 V +RKVKILKAPKFDLGKLM VHGD Sbjct: 209 VFIRKVKILKAPKFDLGKLMEVHGD 233 Score = 27.7 bits (60), Expect(2) = 6e-08 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = -2 Query: 86 TSQDVGVKLDRPDGDEVIPGAEEVAAA 6 T++DVGVK+DRP + ++ E+ A Sbjct: 235 TAEDVGVKVDRPADETMVEEPTEIIGA 261
>RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific protein| BIS289) Length = 261 Score = 43.9 bits (102), Expect(2) = 2e-07 Identities = 21/25 (84%), Positives = 22/25 (88%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGD 88 V +RKVKILKAPKFDL KLM VHGD Sbjct: 210 VFIRKVKILKAPKFDLRKLMEVHGD 234 Score = 29.3 bits (64), Expect(2) = 2e-07 Identities = 14/27 (51%), Positives = 19/27 (70%) Frame = -2 Query: 86 TSQDVGVKLDRPDGDEVIPGAEEVAAA 6 T++DVGVK+DRP DEV+ E+ A Sbjct: 236 TAEDVGVKVDRP-ADEVVEEPTEIIGA 261
>RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)| Length = 259 Score = 47.0 bits (110), Expect(2) = 4e-07 Identities = 22/25 (88%), Positives = 23/25 (92%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGD 88 V +RKVKILKAPKFDLGKLM VHGD Sbjct: 209 VFIRKVKILKAPKFDLGKLMEVHGD 233 Score = 24.6 bits (52), Expect(2) = 4e-07 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = -2 Query: 83 SQDVGVKLDRPDGDEVIPGAEEVAA 9 ++D+G KLDRP + V E + A Sbjct: 235 NEDIGTKLDRPAEEAVAEPTEVIGA 259
>RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a| Length = 247 Score = 42.4 bits (98), Expect = 4e-04 Identities = 20/23 (86%), Positives = 21/23 (91%) Frame = -1 Query: 156 VRKVKILKAPKFDLGKLM*VHGD 88 +RKVKILKAPKFDL KLM VHGD Sbjct: 209 IRKVKILKAPKFDLMKLMEVHGD 231
>RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a| Length = 265 Score = 41.2 bits (95), Expect = 8e-04 Identities = 20/34 (58%), Positives = 25/34 (73%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGDDKPGCWCEA 61 V VRKVK+LK PKF+LGKLM +HG+ G +A Sbjct: 209 VYVRKVKMLKKPKFELGKLMELHGEGGAGTAAKA 242
>RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformation effector| protein) Length = 265 Score = 40.8 bits (94), Expect = 0.001 Identities = 19/29 (65%), Positives = 23/29 (79%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGDDKPG 76 V VRKVK+LK PKF+LGKLM +HG+ G Sbjct: 209 VYVRKVKMLKKPKFELGKLMELHGEGGAG 237
>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a| Length = 263 Score = 40.0 bits (92), Expect = 0.002 Identities = 18/25 (72%), Positives = 22/25 (88%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGD 88 V VRKVK+LK PKF+LGKLM +HG+ Sbjct: 209 VYVRKVKMLKKPKFELGKLMELHGE 233
>RS3A_XENLA (Q801S3) 40S ribosomal protein S3a| Length = 263 Score = 40.0 bits (92), Expect = 0.002 Identities = 18/25 (72%), Positives = 22/25 (88%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGD 88 V VRKVK+LK PKF+LGKLM +HG+ Sbjct: 209 VYVRKVKMLKKPKFELGKLMELHGE 233
>RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformation effector| protein) [Contains: 40S ribosomal protein S3b] Length = 263 Score = 40.0 bits (92), Expect = 0.002 Identities = 18/25 (72%), Positives = 22/25 (88%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGD 88 V VRKVK+LK PKF+LGKLM +HG+ Sbjct: 209 VFVRKVKMLKKPKFELGKLMELHGE 233
>RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a| Length = 263 Score = 40.0 bits (92), Expect = 0.002 Identities = 18/25 (72%), Positives = 22/25 (88%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGD 88 V VRKVK+LK PKF+LGKLM +HG+ Sbjct: 209 VYVRKVKMLKKPKFELGKLMELHGE 233
>RS3A_MOUSE (P97351) 40S ribosomal protein S3a| Length = 263 Score = 40.0 bits (92), Expect = 0.002 Identities = 18/25 (72%), Positives = 22/25 (88%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGD 88 V VRKVK+LK PKF+LGKLM +HG+ Sbjct: 209 VFVRKVKMLKKPKFELGKLMELHGE 233
>RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a| Length = 263 Score = 40.0 bits (92), Expect = 0.002 Identities = 18/25 (72%), Positives = 22/25 (88%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGD 88 V VRKVK+LK PKF+LGKLM +HG+ Sbjct: 209 VFVRKVKMLKKPKFELGKLMELHGE 233
>RS3A_HUMAN (P61247) 40S ribosomal protein S3a| Length = 263 Score = 40.0 bits (92), Expect = 0.002 Identities = 18/25 (72%), Positives = 22/25 (88%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGD 88 V VRKVK+LK PKF+LGKLM +HG+ Sbjct: 209 VFVRKVKMLKKPKFELGKLMELHGE 233
>RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a| Length = 263 Score = 40.0 bits (92), Expect = 0.002 Identities = 18/25 (72%), Positives = 22/25 (88%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGD 88 V VRKVK+LK PKF+LGKLM +HG+ Sbjct: 209 VFVRKVKMLKKPKFELGKLMELHGE 233
>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)| Length = 263 Score = 40.0 bits (92), Expect = 0.002 Identities = 18/25 (72%), Positives = 22/25 (88%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGD 88 V VRKVK+LK PKF+LGKLM +HG+ Sbjct: 209 VYVRKVKMLKKPKFELGKLMELHGE 233
>RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a| Length = 263 Score = 40.0 bits (92), Expect = 0.002 Identities = 18/25 (72%), Positives = 22/25 (88%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGD 88 V VRKVK+LK PKF+LGKLM +HG+ Sbjct: 209 VFVRKVKMLKKPKFELGKLMELHGE 233
>RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)| Length = 260 Score = 40.0 bits (92), Expect = 0.002 Identities = 18/25 (72%), Positives = 22/25 (88%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGD 88 V VRKVK+LK PKF+LGKLM +HG+ Sbjct: 206 VFVRKVKMLKKPKFELGKLMELHGE 230
>RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a| Length = 266 Score = 40.0 bits (92), Expect = 0.002 Identities = 18/25 (72%), Positives = 22/25 (88%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGD 88 V VRKVK+LK PKF+LGKLM +HG+ Sbjct: 209 VYVRKVKMLKKPKFELGKLMELHGE 233
>RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich protein KRP-A)| Length = 264 Score = 38.9 bits (89), Expect = 0.004 Identities = 16/25 (64%), Positives = 21/25 (84%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGD 88 V + KVK+LK PKFD+GKLM +HG+ Sbjct: 209 VLIHKVKVLKKPKFDVGKLMELHGE 233
>RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)| Length = 254 Score = 38.1 bits (87), Expect = 0.007 Identities = 16/25 (64%), Positives = 21/25 (84%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGD 88 + VRKVK+LK PKFD+G LM +HG+ Sbjct: 209 IHVRKVKLLKQPKFDVGALMALHGE 233
>RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)| Length = 254 Score = 38.1 bits (87), Expect = 0.007 Identities = 16/25 (64%), Positives = 21/25 (84%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGD 88 + VRKVK+LK PKFD+G LM +HG+ Sbjct: 209 IHVRKVKLLKQPKFDVGALMALHGE 233
>RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)| Length = 268 Score = 38.1 bits (87), Expect = 0.007 Identities = 16/25 (64%), Positives = 20/25 (80%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGD 88 V +RKVK+LK P+FDL LM +HGD Sbjct: 212 VYIRKVKVLKKPRFDLSSLMELHGD 236
>RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)| Length = 267 Score = 37.7 bits (86), Expect = 0.009 Identities = 15/25 (60%), Positives = 21/25 (84%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGD 88 V +RKVK+LK P+FD+ KL+ +HGD Sbjct: 212 VYIRKVKVLKKPRFDVSKLLELHGD 236
>RS3A_CAEEL (P48154) 40S ribosomal protein S3a| Length = 256 Score = 36.6 bits (83), Expect = 0.019 Identities = 16/25 (64%), Positives = 20/25 (80%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGD 88 V +RKVKI+K PK DLG+L +HGD Sbjct: 207 VYIRKVKIIKRPKVDLGRLHDLHGD 231
>RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)| Length = 251 Score = 36.2 bits (82), Expect = 0.025 Identities = 17/27 (62%), Positives = 21/27 (77%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGDDK 82 V VRKVKILKAPK D KL+ +HG+ + Sbjct: 209 VLVRKVKILKAPKHDAQKLLELHGESQ 235
>RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)| Length = 251 Score = 36.2 bits (82), Expect = 0.025 Identities = 17/27 (62%), Positives = 21/27 (77%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGDDK 82 V VRKVKILKAPK D KL+ +HG+ + Sbjct: 209 VFVRKVKILKAPKHDAQKLLELHGESQ 235
>RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)| Length = 255 Score = 36.2 bits (82), Expect = 0.025 Identities = 15/25 (60%), Positives = 20/25 (80%) Frame = -1 Query: 162 VXVRKVKILKAPKFDLGKLM*VHGD 88 V +RKVK+LK PKFD G L+ +HG+ Sbjct: 209 VHIRKVKLLKQPKFDWGSLLALHGE 233 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.312 0.123 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,724,833 Number of Sequences: 219361 Number of extensions: 270754 Number of successful extensions: 860 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 837 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 860 length of database: 80,573,946 effective HSP length: 29 effective length of database: 74,212,477 effective search space used: 1781099448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
