ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags6g18 |
|---|---|
| Clone Library Name | barley_pub |
>SRP72_CANFA (P33731) Signal recognition particle 72 kDa protein (SRP72)| Length = 670 Score = 48.5 bits (114), Expect = 1e-05 Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 7/152 (4%) Frame = -1 Query: 607 FKLNHGRDEEACQLYEELVKSYGST-EALAGLVATSARTDLAKAEQYEKQLKPLPGLQ-G 434 FKL +GR +EA E+L K LA L++ + D KA+ K L + Sbjct: 455 FKLKYGRKKEAISDLEQLWKQNPKDIHTLAQLISAYSLVDPEKAKALSKHLPSSDSMSLK 514 Query: 433 IDVKSLEKTSGARHVEQA---MKVDTPEEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXPE 263 +DV++LE + GA ++ + + D+ + PE Sbjct: 515 VDVEALENSPGATYIRKKGGKVAGDSQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPE 574 Query: 262 RWLPKRERSTYRPKRKDKRAQV--RGAQGAVS 173 RWLP RERS YR ++K K+ +G QGA + Sbjct: 575 RWLPMRERSYYRGRKKGKKKDQIGKGTQGATA 606 Score = 29.3 bits (64), Expect = 9.4 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Frame = -1 Query: 592 GRDEEACQLYEELVKSYGSTEALAGLVATSARTDLAKAEQYEKQLK-PLPGLQGIDVKSL 416 GR EEA QLY +++K + L ++A + T ++ + K L +G++ K Sbjct: 239 GRTEEALQLYNQIIKLKPTDVGLLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLS 298 Query: 415 EKTSGARHVEQAM 377 +K A +A+ Sbjct: 299 KKQLQAIEFNKAL 311
>SRP72_HUMAN (O76094) Signal recognition particle 72 kDa protein (SRP72)| Length = 670 Score = 48.1 bits (113), Expect = 2e-05 Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 7/152 (4%) Frame = -1 Query: 607 FKLNHGRDEEACQLYEELVKSYGST-EALAGLVATSARTDLAKAEQYEKQLKPLPGLQ-G 434 FKL +GR +EA ++L K LA L++ + D KA+ K L + Sbjct: 455 FKLKYGRKKEAISDLQQLWKQNPKDIHTLAQLISAYSLVDPEKAKALSKHLPSSDSMSLK 514 Query: 433 IDVKSLEKTSGARHVEQA---MKVDTPEEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXPE 263 +DV++LE ++GA ++ + + D+ + PE Sbjct: 515 VDVEALENSAGATYIRKKGGKVTGDSQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPE 574 Query: 262 RWLPKRERSTYRPKRKDKRAQV--RGAQGAVS 173 RWLP RERS YR ++K K+ +G QGA + Sbjct: 575 RWLPMRERSYYRGRKKGKKKDQIGKGTQGATA 606 Score = 29.3 bits (64), Expect = 9.4 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Frame = -1 Query: 592 GRDEEACQLYEELVKSYGSTEALAGLVATSARTDLAKAEQYEKQLK-PLPGLQGIDVKSL 416 GR EEA QLY +++K + L ++A + T ++ + K L +G++ K Sbjct: 239 GRTEEALQLYNQIIKLKPTDVGLLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLS 298 Query: 415 EKTSGARHVEQAM 377 +K A +A+ Sbjct: 299 KKQLQAIEFNKAL 311
>SRP72_CAEEL (P91240) Signal recognition particle 72 kDa protein homolog (SRP72)| Length = 694 Score = 47.4 bits (111), Expect = 3e-05 Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 8/148 (5%) Frame = -1 Query: 592 GRDEEACQLYEELVKSYGSTEAL-AGLVATSARTDLAKAEQYEKQLKPLPGLQGIDVKSL 416 G + A + E+LV+ + L LV ++TD KAE +L P ++V L Sbjct: 502 GNETAATKHLEKLVEKFPEDLQLQCRLVGAYSKTDPKKAESLSAKLFPETMEVDVNVDEL 561 Query: 415 EKTSGA------RHVEQAMKVDTPEEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXPERWL 254 E + R ++A T E PERWL Sbjct: 562 EDSDWILYGEKYRQKKEAKSPQTAEIAATRKLKIATKRKRKIRLPKNYNSAVTPDPERWL 621 Query: 253 PKRERSTYRPKRKDKRAQV-RGAQGAVS 173 P++ERSTY+ KRK++ ++ RG QG+ S Sbjct: 622 PRQERSTYKRKRKNREREIGRGTQGSSS 649
>SRP72_SCHMA (P49965) Signal recognition particle 72 kDa protein (SRP72)| Length = 707 Score = 43.5 bits (101), Expect = 5e-04 Identities = 41/148 (27%), Positives = 55/148 (37%), Gaps = 28/148 (18%) Frame = -1 Query: 526 LAGLVATSARTDLAKAEQYEKQLKPLPGLQGIDVKSLEKTS--GARHVEQAMKVDTPEEV 353 +A LV A+ D KAEQ K L+ L DV +LE T GA+ +++ K P + Sbjct: 517 VARLVRAYAQFDRPKAEQTCKSLQAKESLSEADVDTLETTFLYGAKSLKRLGKPSEPTDT 576 Query: 352 XXXXXXXXXXXXXXXXXXXXXXXXXXXXP-------------------------ERWLPK 248 RWLP+ Sbjct: 577 SDKGKSKRSQIKKSISDIPSSEDPGAQPVISRPKRKKRKVRLPKNYQPGVMPDPNRWLPR 636 Query: 247 RERSTYRPKRKDKR-AQVRGAQGAVSRE 167 RER+ YR KR+DKR A RG QG ++ E Sbjct: 637 RERTHYRGKRRDKRFAPTRGPQGQITGE 664
>SRP72_YEAST (P38688) Signal recognition particle 72 kDa protein homolog (SRP72)| Length = 640 Score = 38.9 bits (89), Expect = 0.012 Identities = 18/36 (50%), Positives = 24/36 (66%) Frame = -1 Query: 265 ERWLPKRERSTYRPKRKDKRAQVRGAQGAVSREKHD 158 ERWLP R+RSTYRPK+K + A + QG +K + Sbjct: 582 ERWLPLRDRSTYRPKKKQQGA--KQTQGGAMNKKSE 615
>TNK1_MOUSE (Q99ML2) Non-receptor tyrosine-protein kinase TNK1 (EC 2.7.10.2)| (Kinase of embryonic stem cells) Length = 666 Score = 30.0 bits (66), Expect = 5.5 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +1 Query: 370 QPSWLAL-HALHQMSSPGSLRQFPEDPATVSAASHIAQLSQGQCVRTL 510 Q +WL+ + +++ PG+LR P DP T+ S +GQ RTL Sbjct: 379 QEAWLSEGRCVREVTEPGALRMEPGDPITIIEGSLDTATWKGQNGRTL 426
>GATB_METJA (Q57624) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B| (EC 6.3.5.-) (Asp/Glu-ADT subunit B) Length = 472 Score = 30.0 bits (66), Expect = 5.5 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = -1 Query: 586 DEEACQLYEELVKSYGSTEALAGLVATSARTDLAKAEQYEK 464 D + +++EE+VKS G + L T R +L ++ QY K Sbjct: 312 DLDMAEMFEEVVKSLGVNKENVDLAVTWIRNELRRSLQYHK 352 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,839,547 Number of Sequences: 219361 Number of extensions: 829490 Number of successful extensions: 2723 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 2691 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2723 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
